Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04771

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04770 and MPMX19_04771 are separated by 193 nucleotidesMPMX19_04771 and MPMX19_04772 are separated by 59 nucleotides MPMX19_04770: MPMX19_04770 - Sialic acid-binding periplasmic protein SiaP, at 160,913 to 161,953 _04770 MPMX19_04771: MPMX19_04771 - Sialic acid TRAP transporter permease protein SiaT, at 162,147 to 164,039 _04771 MPMX19_04772: MPMX19_04772 - L-threonate dehydrogenase, at 164,099 to 165,016 _04772 Position (kb) 162 163 164 165Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 161.294 kb on + strand, within MPMX19_04770at 161.294 kb on + strand, within MPMX19_04770at 161.294 kb on + strand, within MPMX19_04770at 161.294 kb on + strand, within MPMX19_04770at 161.294 kb on + strand, within MPMX19_04770at 161.295 kb on - strand, within MPMX19_04770at 161.295 kb on - strand, within MPMX19_04770at 161.295 kb on - strand, within MPMX19_04770at 161.295 kb on - strand, within MPMX19_04770at 161.295 kb on - strand, within MPMX19_04770at 161.546 kb on + strand, within MPMX19_04770at 161.546 kb on + strand, within MPMX19_04770at 161.546 kb on + strand, within MPMX19_04770at 161.546 kb on + strand, within MPMX19_04770at 161.547 kb on - strand, within MPMX19_04770at 161.618 kb on + strand, within MPMX19_04770at 161.618 kb on + strand, within MPMX19_04770at 161.666 kb on + strand, within MPMX19_04770at 161.667 kb on - strand, within MPMX19_04770at 161.879 kb on + strandat 161.879 kb on + strandat 161.879 kb on + strandat 161.880 kb on - strandat 161.880 kb on - strandat 161.901 kb on - strandat 161.901 kb on - strandat 161.901 kb on - strandat 161.901 kb on - strandat 161.901 kb on - strandat 162.075 kb on + strandat 162.324 kb on + strandat 162.325 kb on - strandat 162.428 kb on + strand, within MPMX19_04771at 162.428 kb on + strand, within MPMX19_04771at 162.428 kb on + strand, within MPMX19_04771at 162.428 kb on + strand, within MPMX19_04771at 162.429 kb on - strand, within MPMX19_04771at 162.429 kb on - strand, within MPMX19_04771at 162.429 kb on - strand, within MPMX19_04771at 162.429 kb on - strand, within MPMX19_04771at 162.429 kb on - strand, within MPMX19_04771at 162.540 kb on + strand, within MPMX19_04771at 162.541 kb on - strand, within MPMX19_04771at 162.861 kb on + strand, within MPMX19_04771at 163.053 kb on + strand, within MPMX19_04771at 163.053 kb on + strand, within MPMX19_04771at 163.053 kb on + strand, within MPMX19_04771at 163.053 kb on + strand, within MPMX19_04771at 163.053 kb on + strand, within MPMX19_04771at 163.053 kb on + strand, within MPMX19_04771at 163.053 kb on + strand, within MPMX19_04771at 163.053 kb on + strand, within MPMX19_04771at 163.053 kb on + strand, within MPMX19_04771at 163.053 kb on + strand, within MPMX19_04771at 163.053 kb on + strand, within MPMX19_04771at 163.053 kb on + strand, within MPMX19_04771at 163.053 kb on + strand, within MPMX19_04771at 163.053 kb on + strand, within MPMX19_04771at 163.053 kb on + strand, within MPMX19_04771at 163.053 kb on + strand, within MPMX19_04771at 163.074 kb on + strand, within MPMX19_04771at 163.074 kb on + strand, within MPMX19_04771at 163.074 kb on + strand, within MPMX19_04771at 163.074 kb on + strand, within MPMX19_04771at 163.074 kb on + strand, within MPMX19_04771at 163.074 kb on + strand, within MPMX19_04771at 163.074 kb on + strand, within MPMX19_04771at 163.074 kb on + strand, within MPMX19_04771at 163.074 kb on + strand, within MPMX19_04771at 163.074 kb on + strand, within MPMX19_04771at 163.074 kb on + strand, within MPMX19_04771at 163.074 kb on + strand, within MPMX19_04771at 163.074 kb on + strand, within MPMX19_04771at 163.509 kb on + strand, within MPMX19_04771at 163.509 kb on + strand, within MPMX19_04771at 163.509 kb on + strand, within MPMX19_04771at 163.509 kb on + strand, within MPMX19_04771at 163.509 kb on + strand, within MPMX19_04771at 163.509 kb on + strand, within MPMX19_04771at 163.536 kb on + strand, within MPMX19_04771at 163.563 kb on + strand, within MPMX19_04771at 163.563 kb on + strand, within MPMX19_04771at 163.563 kb on + strand, within MPMX19_04771at 163.563 kb on + strand, within MPMX19_04771at 163.564 kb on - strand, within MPMX19_04771at 163.564 kb on - strand, within MPMX19_04771at 163.564 kb on - strand, within MPMX19_04771at 163.564 kb on - strand, within MPMX19_04771at 163.839 kb on + strand, within MPMX19_04771at 163.839 kb on + strand, within MPMX19_04771at 163.840 kb on - strand, within MPMX19_04771at 163.840 kb on - strand, within MPMX19_04771at 163.902 kb on + strandat 163.902 kb on + strandat 163.902 kb on + strandat 163.902 kb on + strandat 163.905 kb on + strandat 163.905 kb on + strandat 163.906 kb on - strandat 163.906 kb on - strandat 163.906 kb on - strandat 163.906 kb on - strandat 163.965 kb on + strandat 163.965 kb on + strandat 163.966 kb on - strandat 163.966 kb on - strandat 164.951 kb on + strandat 164.951 kb on + strandat 164.951 kb on + strandat 164.951 kb on + strandat 164.952 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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161,294 + MPMX19_04770 0.37 -0.2
161,294 + MPMX19_04770 0.37 -1.0
161,294 + MPMX19_04770 0.37 -1.6
161,294 + MPMX19_04770 0.37 -0.1
161,294 + MPMX19_04770 0.37 +1.2
161,295 - MPMX19_04770 0.37 +0.8
161,295 - MPMX19_04770 0.37 -0.6
161,295 - MPMX19_04770 0.37 -1.2
161,295 - MPMX19_04770 0.37 +0.2
161,295 - MPMX19_04770 0.37 +0.5
161,546 + MPMX19_04770 0.61 -0.9
161,546 + MPMX19_04770 0.61 -0.3
161,546 + MPMX19_04770 0.61 -1.2
161,546 + MPMX19_04770 0.61 -0.1
161,547 - MPMX19_04770 0.61 -1.7
161,618 + MPMX19_04770 0.68 +0.9
161,618 + MPMX19_04770 0.68 -0.5
161,666 + MPMX19_04770 0.72 -0.5
161,667 - MPMX19_04770 0.72 -0.9
161,879 + +1.2
161,879 + -0.3
161,879 + -2.2
161,880 - +0.3
161,880 - -0.4
161,901 - +0.7
161,901 - -1.7
161,901 - +0.2
161,901 - -0.3
161,901 - +0.6
162,075 + -0.7
162,324 + -0.4
162,325 - +0.1
162,428 + MPMX19_04771 0.15 +1.4
162,428 + MPMX19_04771 0.15 -0.5
162,428 + MPMX19_04771 0.15 -1.3
162,428 + MPMX19_04771 0.15 -0.3
162,429 - MPMX19_04771 0.15 -1.4
162,429 - MPMX19_04771 0.15 +0.1
162,429 - MPMX19_04771 0.15 -1.4
162,429 - MPMX19_04771 0.15 +0.0
162,429 - MPMX19_04771 0.15 -0.6
162,540 + MPMX19_04771 0.21 +1.3
162,541 - MPMX19_04771 0.21 -0.6
162,861 + MPMX19_04771 0.38 +0.0
163,053 + MPMX19_04771 0.48 +0.0
163,053 + MPMX19_04771 0.48 +0.2
163,053 + MPMX19_04771 0.48 -0.2
163,053 + MPMX19_04771 0.48 -0.4
163,053 + MPMX19_04771 0.48 -1.3
163,053 + MPMX19_04771 0.48 -0.7
163,053 + MPMX19_04771 0.48 +0.3
163,053 + MPMX19_04771 0.48 -0.6
163,053 + MPMX19_04771 0.48 +1.3
163,053 + MPMX19_04771 0.48 +1.0
163,053 + MPMX19_04771 0.48 -0.2
163,053 + MPMX19_04771 0.48 -0.2
163,053 + MPMX19_04771 0.48 -0.5
163,053 + MPMX19_04771 0.48 -0.8
163,053 + MPMX19_04771 0.48 -1.6
163,053 + MPMX19_04771 0.48 +0.7
163,074 + MPMX19_04771 0.49 +0.1
163,074 + MPMX19_04771 0.49 +0.3
163,074 + MPMX19_04771 0.49 +2.2
163,074 + MPMX19_04771 0.49 -0.6
163,074 + MPMX19_04771 0.49 +0.8
163,074 + MPMX19_04771 0.49 -0.4
163,074 + MPMX19_04771 0.49 +0.1
163,074 + MPMX19_04771 0.49 +0.6
163,074 + MPMX19_04771 0.49 -0.7
163,074 + MPMX19_04771 0.49 +0.2
163,074 + MPMX19_04771 0.49 +1.0
163,074 + MPMX19_04771 0.49 +0.1
163,074 + MPMX19_04771 0.49 -1.6
163,509 + MPMX19_04771 0.72 -0.5
163,509 + MPMX19_04771 0.72 +0.1
163,509 + MPMX19_04771 0.72 -1.4
163,509 + MPMX19_04771 0.72 -1.0
163,509 + MPMX19_04771 0.72 +1.2
163,509 + MPMX19_04771 0.72 -0.7
163,536 + MPMX19_04771 0.73 -0.6
163,563 + MPMX19_04771 0.75 -0.3
163,563 + MPMX19_04771 0.75 +0.0
163,563 + MPMX19_04771 0.75 -1.6
163,563 + MPMX19_04771 0.75 +0.3
163,564 - MPMX19_04771 0.75 +0.5
163,564 - MPMX19_04771 0.75 -1.4
163,564 - MPMX19_04771 0.75 -0.7
163,564 - MPMX19_04771 0.75 -1.2
163,839 + MPMX19_04771 0.89 -0.5
163,839 + MPMX19_04771 0.89 -0.5
163,840 - MPMX19_04771 0.89 +0.8
163,840 - MPMX19_04771 0.89 +1.0
163,902 + -1.4
163,902 + -2.9
163,902 + -0.5
163,902 + -1.2
163,905 + -1.4
163,905 + -0.1
163,906 - -0.1
163,906 - -1.9
163,906 - -0.5
163,906 - -2.0
163,965 + -1.4
163,965 + -0.5
163,966 - +1.6
163,966 - -1.1
164,951 + -1.0
164,951 + +1.0
164,951 + -0.5
164,951 + +0.0
164,952 - -0.6

Or see this region's nucleotide sequence