Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04769 and MPMX19_04770 are separated by 111 nucleotides MPMX19_04770 and MPMX19_04771 are separated by 193 nucleotides
MPMX19_04769: MPMX19_04769 - Apulose-4-phosphate transketolase subunit B, at 159,785 to 160,801
_04769
MPMX19_04770: MPMX19_04770 - Sialic acid-binding periplasmic protein SiaP, at 160,913 to 161,953
_04770
MPMX19_04771: MPMX19_04771 - Sialic acid TRAP transporter permease protein SiaT, at 162,147 to 164,039
_04771
Position (kb) 160
161
162 Strain fitness (log2 ratio) -2
-1
0
1
2 at 159.968 kb on + strand, within MPMX19_04769 at 159.968 kb on + strand, within MPMX19_04769 at 159.968 kb on + strand, within MPMX19_04769 at 159.968 kb on + strand, within MPMX19_04769 at 159.968 kb on + strand, within MPMX19_04769 at 159.968 kb on + strand, within MPMX19_04769 at 159.968 kb on + strand, within MPMX19_04769 at 159.969 kb on - strand, within MPMX19_04769 at 159.969 kb on - strand, within MPMX19_04769 at 159.969 kb on - strand, within MPMX19_04769 at 159.969 kb on - strand, within MPMX19_04769 at 159.969 kb on - strand, within MPMX19_04769 at 160.013 kb on + strand, within MPMX19_04769 at 160.013 kb on + strand, within MPMX19_04769 at 160.013 kb on + strand, within MPMX19_04769 at 160.014 kb on - strand, within MPMX19_04769 at 160.014 kb on - strand, within MPMX19_04769 at 160.014 kb on - strand, within MPMX19_04769 at 160.014 kb on - strand, within MPMX19_04769 at 160.014 kb on - strand, within MPMX19_04769 at 160.014 kb on - strand, within MPMX19_04769 at 160.097 kb on + strand, within MPMX19_04769 at 160.097 kb on + strand, within MPMX19_04769 at 160.097 kb on + strand, within MPMX19_04769 at 160.097 kb on + strand, within MPMX19_04769 at 160.097 kb on + strand, within MPMX19_04769 at 160.097 kb on + strand, within MPMX19_04769 at 160.097 kb on + strand, within MPMX19_04769 at 160.125 kb on - strand, within MPMX19_04769 at 160.125 kb on - strand, within MPMX19_04769 at 160.125 kb on - strand, within MPMX19_04769 at 160.125 kb on - strand, within MPMX19_04769 at 160.340 kb on + strand, within MPMX19_04769 at 160.340 kb on + strand, within MPMX19_04769 at 160.340 kb on + strand, within MPMX19_04769 at 160.340 kb on + strand, within MPMX19_04769 at 160.340 kb on + strand, within MPMX19_04769 at 160.341 kb on - strand, within MPMX19_04769 at 160.341 kb on - strand, within MPMX19_04769 at 160.341 kb on - strand, within MPMX19_04769 at 160.341 kb on - strand, within MPMX19_04769 at 160.341 kb on - strand, within MPMX19_04769 at 160.341 kb on - strand, within MPMX19_04769 at 160.341 kb on - strand, within MPMX19_04769 at 160.342 kb on + strand, within MPMX19_04769 at 160.342 kb on + strand, within MPMX19_04769 at 160.343 kb on - strand, within MPMX19_04769 at 160.343 kb on - strand, within MPMX19_04769 at 160.343 kb on - strand, within MPMX19_04769 at 160.385 kb on + strand, within MPMX19_04769 at 160.386 kb on - strand, within MPMX19_04769 at 160.386 kb on - strand, within MPMX19_04769 at 160.391 kb on + strand, within MPMX19_04769 at 160.392 kb on - strand, within MPMX19_04769 at 160.392 kb on - strand, within MPMX19_04769 at 160.751 kb on + strand at 160.751 kb on + strand at 160.752 kb on - strand at 160.752 kb on - strand at 160.752 kb on - strand at 160.800 kb on - strand at 160.800 kb on - strand at 160.892 kb on + strand at 160.892 kb on + strand at 160.892 kb on + strand at 160.892 kb on + strand at 160.892 kb on + strand at 160.892 kb on + strand at 160.892 kb on + strand at 160.892 kb on + strand at 160.892 kb on + strand at 160.892 kb on + strand at 160.892 kb on + strand at 160.892 kb on + strand at 160.892 kb on + strand at 160.892 kb on + strand at 160.893 kb on - strand at 160.893 kb on - strand at 160.893 kb on - strand at 160.893 kb on - strand at 160.893 kb on - strand at 160.893 kb on - strand at 160.893 kb on - strand at 160.893 kb on - strand at 160.893 kb on - strand at 160.893 kb on - strand at 160.893 kb on - strand at 160.893 kb on - strand at 160.893 kb on - strand at 160.893 kb on - strand at 160.893 kb on - strand at 161.012 kb on + strand at 161.013 kb on - strand at 161.045 kb on + strand, within MPMX19_04770 at 161.045 kb on + strand, within MPMX19_04770 at 161.045 kb on + strand, within MPMX19_04770 at 161.045 kb on + strand, within MPMX19_04770 at 161.046 kb on - strand, within MPMX19_04770 at 161.046 kb on - strand, within MPMX19_04770 at 161.046 kb on - strand, within MPMX19_04770 at 161.046 kb on - strand, within MPMX19_04770 at 161.046 kb on - strand, within MPMX19_04770 at 161.046 kb on - strand, within MPMX19_04770 at 161.294 kb on + strand, within MPMX19_04770 at 161.294 kb on + strand, within MPMX19_04770 at 161.294 kb on + strand, within MPMX19_04770 at 161.294 kb on + strand, within MPMX19_04770 at 161.294 kb on + strand, within MPMX19_04770 at 161.295 kb on - strand, within MPMX19_04770 at 161.295 kb on - strand, within MPMX19_04770 at 161.295 kb on - strand, within MPMX19_04770 at 161.295 kb on - strand, within MPMX19_04770 at 161.295 kb on - strand, within MPMX19_04770 at 161.546 kb on + strand, within MPMX19_04770 at 161.546 kb on + strand, within MPMX19_04770 at 161.546 kb on + strand, within MPMX19_04770 at 161.546 kb on + strand, within MPMX19_04770 at 161.547 kb on - strand, within MPMX19_04770 at 161.618 kb on + strand, within MPMX19_04770 at 161.618 kb on + strand, within MPMX19_04770 at 161.666 kb on + strand, within MPMX19_04770 at 161.667 kb on - strand, within MPMX19_04770 at 161.879 kb on + strand at 161.879 kb on + strand at 161.879 kb on + strand at 161.880 kb on - strand at 161.880 kb on - strand at 161.901 kb on - strand at 161.901 kb on - strand at 161.901 kb on - strand at 161.901 kb on - strand at 161.901 kb on - strand at 162.075 kb on + strand at 162.324 kb on + strand at 162.325 kb on - strand at 162.428 kb on + strand, within MPMX19_04771 at 162.428 kb on + strand, within MPMX19_04771 at 162.428 kb on + strand, within MPMX19_04771 at 162.428 kb on + strand, within MPMX19_04771 at 162.429 kb on - strand, within MPMX19_04771 at 162.429 kb on - strand, within MPMX19_04771 at 162.429 kb on - strand, within MPMX19_04771 at 162.429 kb on - strand, within MPMX19_04771 at 162.429 kb on - strand, within MPMX19_04771 at 162.540 kb on + strand, within MPMX19_04771 at 162.541 kb on - strand, within MPMX19_04771 at 162.861 kb on + strand, within MPMX19_04771
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 159,968 + MPMX19_04769 0.18 +2.0 159,968 + MPMX19_04769 0.18 -0.1 159,968 + MPMX19_04769 0.18 -2.0 159,968 + MPMX19_04769 0.18 -2.0 159,968 + MPMX19_04769 0.18 +0.0 159,968 + MPMX19_04769 0.18 -1.4 159,968 + MPMX19_04769 0.18 -0.7 159,969 - MPMX19_04769 0.18 -0.7 159,969 - MPMX19_04769 0.18 -0.6 159,969 - MPMX19_04769 0.18 -0.4 159,969 - MPMX19_04769 0.18 -0.3 159,969 - MPMX19_04769 0.18 -0.7 160,013 + MPMX19_04769 0.22 +1.1 160,013 + MPMX19_04769 0.22 -0.7 160,013 + MPMX19_04769 0.22 +0.6 160,014 - MPMX19_04769 0.23 -0.7 160,014 - MPMX19_04769 0.23 -0.7 160,014 - MPMX19_04769 0.23 -1.9 160,014 - MPMX19_04769 0.23 -1.1 160,014 - MPMX19_04769 0.23 -1.3 160,014 - MPMX19_04769 0.23 -1.0 160,097 + MPMX19_04769 0.31 -0.3 160,097 + MPMX19_04769 0.31 -1.0 160,097 + MPMX19_04769 0.31 -1.7 160,097 + MPMX19_04769 0.31 +1.0 160,097 + MPMX19_04769 0.31 -2.3 160,097 + MPMX19_04769 0.31 -0.3 160,097 + MPMX19_04769 0.31 +0.2 160,125 - MPMX19_04769 0.33 -2.1 160,125 - MPMX19_04769 0.33 -1.2 160,125 - MPMX19_04769 0.33 -1.3 160,125 - MPMX19_04769 0.33 +0.7 160,340 + MPMX19_04769 0.55 -1.0 160,340 + MPMX19_04769 0.55 -1.3 160,340 + MPMX19_04769 0.55 -1.3 160,340 + MPMX19_04769 0.55 +0.6 160,340 + MPMX19_04769 0.55 -2.0 160,341 - MPMX19_04769 0.55 +0.0 160,341 - MPMX19_04769 0.55 -0.6 160,341 - MPMX19_04769 0.55 +0.1 160,341 - MPMX19_04769 0.55 -0.2 160,341 - MPMX19_04769 0.55 +0.8 160,341 - MPMX19_04769 0.55 +0.0 160,341 - MPMX19_04769 0.55 -1.7 160,342 + MPMX19_04769 0.55 -0.7 160,342 + MPMX19_04769 0.55 -0.1 160,343 - MPMX19_04769 0.55 -1.2 160,343 - MPMX19_04769 0.55 +0.2 160,343 - MPMX19_04769 0.55 +1.1 160,385 + MPMX19_04769 0.59 -0.9 160,386 - MPMX19_04769 0.59 -1.0 160,386 - MPMX19_04769 0.59 -0.3 160,391 + MPMX19_04769 0.60 +0.6 160,392 - MPMX19_04769 0.60 +1.1 160,392 - MPMX19_04769 0.60 +0.6 160,751 + -1.7 160,751 + +0.0 160,752 - +0.3 160,752 - +1.6 160,752 - -0.6 160,800 - +1.2 160,800 - -0.2 160,892 + +0.0 160,892 + -1.0 160,892 + +0.9 160,892 + -0.1 160,892 + -0.9 160,892 + -0.7 160,892 + +0.3 160,892 + -1.7 160,892 + -0.7 160,892 + +0.8 160,892 + -0.8 160,892 + -0.7 160,892 + +0.6 160,892 + -0.0 160,893 - +0.0 160,893 - +0.2 160,893 - -1.1 160,893 - +1.6 160,893 - +0.1 160,893 - +0.2 160,893 - -0.7 160,893 - -0.1 160,893 - -0.1 160,893 - -1.7 160,893 - -1.6 160,893 - -0.4 160,893 - +1.0 160,893 - -0.4 160,893 - -1.6 161,012 + -0.5 161,013 - +1.0 161,045 + MPMX19_04770 0.13 -1.2 161,045 + MPMX19_04770 0.13 -1.7 161,045 + MPMX19_04770 0.13 +0.2 161,045 + MPMX19_04770 0.13 +0.3 161,046 - MPMX19_04770 0.13 -0.4 161,046 - MPMX19_04770 0.13 +0.6 161,046 - MPMX19_04770 0.13 -1.0 161,046 - MPMX19_04770 0.13 -0.1 161,046 - MPMX19_04770 0.13 -1.7 161,046 - MPMX19_04770 0.13 +1.0 161,294 + MPMX19_04770 0.37 -0.2 161,294 + MPMX19_04770 0.37 -1.0 161,294 + MPMX19_04770 0.37 -1.6 161,294 + MPMX19_04770 0.37 -0.1 161,294 + MPMX19_04770 0.37 +1.2 161,295 - MPMX19_04770 0.37 +0.8 161,295 - MPMX19_04770 0.37 -0.6 161,295 - MPMX19_04770 0.37 -1.2 161,295 - MPMX19_04770 0.37 +0.2 161,295 - MPMX19_04770 0.37 +0.5 161,546 + MPMX19_04770 0.61 -0.9 161,546 + MPMX19_04770 0.61 -0.3 161,546 + MPMX19_04770 0.61 -1.2 161,546 + MPMX19_04770 0.61 -0.1 161,547 - MPMX19_04770 0.61 -1.7 161,618 + MPMX19_04770 0.68 +0.9 161,618 + MPMX19_04770 0.68 -0.5 161,666 + MPMX19_04770 0.72 -0.5 161,667 - MPMX19_04770 0.72 -0.9 161,879 + +1.2 161,879 + -0.3 161,879 + -2.2 161,880 - +0.3 161,880 - -0.4 161,901 - +0.7 161,901 - -1.7 161,901 - +0.2 161,901 - -0.3 161,901 - +0.6 162,075 + -0.7 162,324 + -0.4 162,325 - +0.1 162,428 + MPMX19_04771 0.15 +1.4 162,428 + MPMX19_04771 0.15 -0.5 162,428 + MPMX19_04771 0.15 -1.3 162,428 + MPMX19_04771 0.15 -0.3 162,429 - MPMX19_04771 0.15 -1.4 162,429 - MPMX19_04771 0.15 +0.1 162,429 - MPMX19_04771 0.15 -1.4 162,429 - MPMX19_04771 0.15 +0.0 162,429 - MPMX19_04771 0.15 -0.6 162,540 + MPMX19_04771 0.21 +1.3 162,541 - MPMX19_04771 0.21 -0.6 162,861 + MPMX19_04771 0.38 +0.0
Or see this region's nucleotide sequence