Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04756

Experiment: NL-CCM, start OD=0.1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_04754 and MPMX19_04755 are separated by 17 nucleotidesMPMX19_04755 and MPMX19_04756 overlap by 4 nucleotidesMPMX19_04756 and MPMX19_04757 are separated by 1 nucleotidesMPMX19_04757 and MPMX19_04758 are separated by 104 nucleotides MPMX19_04754: MPMX19_04754 - Cysteine desulfurase, at 145,742 to 146,995 _04754 MPMX19_04755: MPMX19_04755 - Ureidoglycolate lyase, at 147,013 to 147,540 _04755 MPMX19_04756: MPMX19_04756 - Glutamine transport ATP-binding protein GlnQ, at 147,537 to 148,346 _04756 MPMX19_04757: MPMX19_04757 - L-cystine transport system permease protein YecS, at 148,348 to 149,019 _04757 MPMX19_04758: MPMX19_04758 - Glutamine-binding periplasmic protein, at 149,124 to 149,924 _04758 Position (kb) 147 148 149Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 146.700 kb on + strand, within MPMX19_04754at 146.700 kb on + strand, within MPMX19_04754at 146.700 kb on + strand, within MPMX19_04754at 146.700 kb on + strand, within MPMX19_04754at 146.700 kb on + strand, within MPMX19_04754at 146.700 kb on + strand, within MPMX19_04754at 146.701 kb on - strand, within MPMX19_04754at 146.820 kb on + strand, within MPMX19_04754at 146.820 kb on + strand, within MPMX19_04754at 146.821 kb on - strand, within MPMX19_04754at 146.821 kb on - strand, within MPMX19_04754at 146.821 kb on - strand, within MPMX19_04754at 146.821 kb on - strand, within MPMX19_04754at 146.821 kb on - strand, within MPMX19_04754at 146.821 kb on - strand, within MPMX19_04754at 146.821 kb on - strand, within MPMX19_04754at 146.821 kb on - strand, within MPMX19_04754at 146.821 kb on - strand, within MPMX19_04754at 146.821 kb on - strand, within MPMX19_04754at 146.821 kb on - strand, within MPMX19_04754at 146.856 kb on + strand, within MPMX19_04754at 146.857 kb on - strand, within MPMX19_04754at 147.167 kb on + strand, within MPMX19_04755at 147.167 kb on + strand, within MPMX19_04755at 147.167 kb on + strand, within MPMX19_04755at 147.167 kb on + strand, within MPMX19_04755at 147.167 kb on + strand, within MPMX19_04755at 147.167 kb on + strand, within MPMX19_04755at 147.168 kb on - strand, within MPMX19_04755at 147.168 kb on - strand, within MPMX19_04755at 147.168 kb on - strand, within MPMX19_04755at 147.168 kb on - strand, within MPMX19_04755at 147.168 kb on - strand, within MPMX19_04755at 147.356 kb on + strand, within MPMX19_04755at 147.356 kb on + strand, within MPMX19_04755at 147.357 kb on - strand, within MPMX19_04755at 147.357 kb on - strand, within MPMX19_04755at 147.416 kb on + strand, within MPMX19_04755at 147.417 kb on - strand, within MPMX19_04755at 148.105 kb on + strand, within MPMX19_04756at 148.105 kb on + strand, within MPMX19_04756at 148.106 kb on - strand, within MPMX19_04756at 148.231 kb on + strand, within MPMX19_04756at 148.231 kb on + strand, within MPMX19_04756at 148.231 kb on + strand, within MPMX19_04756at 148.231 kb on + strand, within MPMX19_04756at 148.231 kb on + strand, within MPMX19_04756at 148.231 kb on + strand, within MPMX19_04756at 148.231 kb on + strand, within MPMX19_04756at 148.231 kb on + strand, within MPMX19_04756at 148.231 kb on + strand, within MPMX19_04756at 148.231 kb on + strand, within MPMX19_04756at 148.231 kb on + strand, within MPMX19_04756at 148.231 kb on + strand, within MPMX19_04756at 148.231 kb on + strand, within MPMX19_04756at 148.231 kb on + strand, within MPMX19_04756at 148.231 kb on + strand, within MPMX19_04756at 148.231 kb on + strand, within MPMX19_04756at 148.231 kb on + strand, within MPMX19_04756at 148.232 kb on - strand, within MPMX19_04756at 148.232 kb on - strand, within MPMX19_04756at 148.232 kb on - strand, within MPMX19_04756at 148.232 kb on - strand, within MPMX19_04756at 148.232 kb on - strand, within MPMX19_04756at 148.232 kb on - strand, within MPMX19_04756at 148.232 kb on - strand, within MPMX19_04756at 148.232 kb on - strand, within MPMX19_04756at 148.232 kb on - strand, within MPMX19_04756at 148.232 kb on - strand, within MPMX19_04756at 148.232 kb on - strand, within MPMX19_04756at 148.232 kb on - strand, within MPMX19_04756at 148.232 kb on - strand, within MPMX19_04756at 148.232 kb on - strand, within MPMX19_04756at 148.232 kb on - strand, within MPMX19_04756at 148.316 kb on + strandat 148.331 kb on + strandat 148.421 kb on + strand, within MPMX19_04757at 148.421 kb on + strand, within MPMX19_04757at 148.421 kb on + strand, within MPMX19_04757at 148.421 kb on + strand, within MPMX19_04757at 148.421 kb on + strand, within MPMX19_04757at 148.421 kb on + strand, within MPMX19_04757at 148.421 kb on + strand, within MPMX19_04757at 148.421 kb on + strand, within MPMX19_04757at 148.421 kb on + strand, within MPMX19_04757at 148.421 kb on + strand, within MPMX19_04757at 148.421 kb on + strand, within MPMX19_04757at 148.421 kb on + strand, within MPMX19_04757at 148.421 kb on + strand, within MPMX19_04757at 148.421 kb on + strand, within MPMX19_04757at 148.422 kb on - strand, within MPMX19_04757at 148.422 kb on - strand, within MPMX19_04757at 148.422 kb on - strand, within MPMX19_04757at 148.422 kb on - strand, within MPMX19_04757at 148.422 kb on - strand, within MPMX19_04757at 148.422 kb on - strand, within MPMX19_04757at 148.422 kb on - strand, within MPMX19_04757at 148.422 kb on - strand, within MPMX19_04757at 148.422 kb on - strand, within MPMX19_04757at 148.422 kb on - strand, within MPMX19_04757at 148.422 kb on - strand, within MPMX19_04757at 148.422 kb on - strand, within MPMX19_04757at 148.422 kb on - strand, within MPMX19_04757at 148.619 kb on + strand, within MPMX19_04757at 148.619 kb on + strand, within MPMX19_04757at 148.619 kb on + strand, within MPMX19_04757at 148.619 kb on + strand, within MPMX19_04757at 148.620 kb on - strand, within MPMX19_04757at 148.620 kb on - strand, within MPMX19_04757at 148.700 kb on + strand, within MPMX19_04757at 148.700 kb on + strand, within MPMX19_04757at 148.701 kb on - strand, within MPMX19_04757at 148.778 kb on + strand, within MPMX19_04757at 148.778 kb on + strand, within MPMX19_04757at 148.778 kb on + strand, within MPMX19_04757at 148.778 kb on + strand, within MPMX19_04757at 148.778 kb on + strand, within MPMX19_04757at 148.778 kb on + strand, within MPMX19_04757at 148.778 kb on + strand, within MPMX19_04757at 148.778 kb on + strand, within MPMX19_04757at 148.779 kb on - strand, within MPMX19_04757at 148.779 kb on - strand, within MPMX19_04757at 148.779 kb on - strand, within MPMX19_04757at 148.779 kb on - strand, within MPMX19_04757at 148.779 kb on - strand, within MPMX19_04757at 148.779 kb on - strand, within MPMX19_04757at 148.779 kb on - strand, within MPMX19_04757at 148.779 kb on - strand, within MPMX19_04757at 148.779 kb on - strand, within MPMX19_04757at 148.779 kb on - strand, within MPMX19_04757at 148.781 kb on + strand, within MPMX19_04757at 148.781 kb on + strand, within MPMX19_04757at 148.781 kb on + strand, within MPMX19_04757at 148.781 kb on + strand, within MPMX19_04757at 148.782 kb on - strand, within MPMX19_04757at 148.782 kb on - strand, within MPMX19_04757at 148.782 kb on - strand, within MPMX19_04757at 148.782 kb on - strand, within MPMX19_04757at 148.832 kb on + strand, within MPMX19_04757at 148.832 kb on + strand, within MPMX19_04757at 148.832 kb on + strand, within MPMX19_04757at 148.832 kb on + strand, within MPMX19_04757at 148.832 kb on + strand, within MPMX19_04757at 148.832 kb on + strand, within MPMX19_04757at 148.832 kb on + strand, within MPMX19_04757at 148.832 kb on + strand, within MPMX19_04757at 148.832 kb on + strand, within MPMX19_04757at 148.832 kb on + strand, within MPMX19_04757at 148.832 kb on + strand, within MPMX19_04757at 148.832 kb on + strand, within MPMX19_04757at 148.832 kb on + strand, within MPMX19_04757at 148.833 kb on - strand, within MPMX19_04757at 148.833 kb on - strand, within MPMX19_04757at 148.833 kb on - strand, within MPMX19_04757at 148.833 kb on - strand, within MPMX19_04757at 148.833 kb on - strand, within MPMX19_04757at 148.833 kb on - strand, within MPMX19_04757at 148.833 kb on - strand, within MPMX19_04757at 148.833 kb on - strand, within MPMX19_04757at 148.833 kb on - strand, within MPMX19_04757at 148.868 kb on + strand, within MPMX19_04757at 148.868 kb on + strand, within MPMX19_04757at 149.020 kb on - strandat 149.020 kb on - strandat 149.293 kb on + strand, within MPMX19_04758at 149.293 kb on + strand, within MPMX19_04758at 149.294 kb on - strand, within MPMX19_04758

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
remove
146,700 + MPMX19_04754 0.76 +0.9
146,700 + MPMX19_04754 0.76 -0.1
146,700 + MPMX19_04754 0.76 +0.9
146,700 + MPMX19_04754 0.76 +0.2
146,700 + MPMX19_04754 0.76 -0.4
146,700 + MPMX19_04754 0.76 -0.4
146,701 - MPMX19_04754 0.76 +0.2
146,820 + MPMX19_04754 0.86 +0.5
146,820 + MPMX19_04754 0.86 +0.2
146,821 - MPMX19_04754 0.86 +2.0
146,821 - MPMX19_04754 0.86 -0.1
146,821 - MPMX19_04754 0.86 +0.6
146,821 - MPMX19_04754 0.86 +0.5
146,821 - MPMX19_04754 0.86 -0.3
146,821 - MPMX19_04754 0.86 +0.0
146,821 - MPMX19_04754 0.86 +0.1
146,821 - MPMX19_04754 0.86 +0.2
146,821 - MPMX19_04754 0.86 -0.4
146,821 - MPMX19_04754 0.86 -0.2
146,821 - MPMX19_04754 0.86 -0.7
146,856 + MPMX19_04754 0.89 +0.0
146,857 - MPMX19_04754 0.89 +1.0
147,167 + MPMX19_04755 0.29 +0.1
147,167 + MPMX19_04755 0.29 -0.3
147,167 + MPMX19_04755 0.29 +0.4
147,167 + MPMX19_04755 0.29 -0.2
147,167 + MPMX19_04755 0.29 -0.5
147,167 + MPMX19_04755 0.29 -0.3
147,168 - MPMX19_04755 0.29 -1.0
147,168 - MPMX19_04755 0.29 -0.5
147,168 - MPMX19_04755 0.29 +1.3
147,168 - MPMX19_04755 0.29 +0.5
147,168 - MPMX19_04755 0.29 -0.4
147,356 + MPMX19_04755 0.65 -1.9
147,356 + MPMX19_04755 0.65 -0.1
147,357 - MPMX19_04755 0.65 -0.6
147,357 - MPMX19_04755 0.65 +0.6
147,416 + MPMX19_04755 0.76 -0.1
147,417 - MPMX19_04755 0.77 +0.2
148,105 + MPMX19_04756 0.70 -0.3
148,105 + MPMX19_04756 0.70 -0.8
148,106 - MPMX19_04756 0.70 -1.4
148,231 + MPMX19_04756 0.86 -0.9
148,231 + MPMX19_04756 0.86 +0.0
148,231 + MPMX19_04756 0.86 -0.7
148,231 + MPMX19_04756 0.86 -2.3
148,231 + MPMX19_04756 0.86 -0.3
148,231 + MPMX19_04756 0.86 +0.6
148,231 + MPMX19_04756 0.86 +0.2
148,231 + MPMX19_04756 0.86 -1.7
148,231 + MPMX19_04756 0.86 +0.1
148,231 + MPMX19_04756 0.86 -0.5
148,231 + MPMX19_04756 0.86 -0.6
148,231 + MPMX19_04756 0.86 +0.0
148,231 + MPMX19_04756 0.86 +1.6
148,231 + MPMX19_04756 0.86 -0.5
148,231 + MPMX19_04756 0.86 -1.6
148,231 + MPMX19_04756 0.86 +0.5
148,231 + MPMX19_04756 0.86 -0.1
148,232 - MPMX19_04756 0.86 -0.7
148,232 - MPMX19_04756 0.86 -0.1
148,232 - MPMX19_04756 0.86 -1.2
148,232 - MPMX19_04756 0.86 -0.6
148,232 - MPMX19_04756 0.86 +0.7
148,232 - MPMX19_04756 0.86 -0.7
148,232 - MPMX19_04756 0.86 -1.1
148,232 - MPMX19_04756 0.86 +1.6
148,232 - MPMX19_04756 0.86 -1.2
148,232 - MPMX19_04756 0.86 -1.2
148,232 - MPMX19_04756 0.86 +1.1
148,232 - MPMX19_04756 0.86 -0.8
148,232 - MPMX19_04756 0.86 -1.0
148,232 - MPMX19_04756 0.86 -1.0
148,232 - MPMX19_04756 0.86 -0.2
148,316 + +0.3
148,331 + +0.7
148,421 + MPMX19_04757 0.11 -0.2
148,421 + MPMX19_04757 0.11 -0.9
148,421 + MPMX19_04757 0.11 +0.5
148,421 + MPMX19_04757 0.11 -0.4
148,421 + MPMX19_04757 0.11 -0.4
148,421 + MPMX19_04757 0.11 +0.5
148,421 + MPMX19_04757 0.11 -1.3
148,421 + MPMX19_04757 0.11 +0.9
148,421 + MPMX19_04757 0.11 -0.8
148,421 + MPMX19_04757 0.11 +0.3
148,421 + MPMX19_04757 0.11 -0.7
148,421 + MPMX19_04757 0.11 -1.7
148,421 + MPMX19_04757 0.11 -0.2
148,421 + MPMX19_04757 0.11 -0.9
148,422 - MPMX19_04757 0.11 -1.9
148,422 - MPMX19_04757 0.11 -0.7
148,422 - MPMX19_04757 0.11 +0.0
148,422 - MPMX19_04757 0.11 -0.1
148,422 - MPMX19_04757 0.11 -0.6
148,422 - MPMX19_04757 0.11 -0.3
148,422 - MPMX19_04757 0.11 -0.3
148,422 - MPMX19_04757 0.11 -0.7
148,422 - MPMX19_04757 0.11 -2.8
148,422 - MPMX19_04757 0.11 +0.4
148,422 - MPMX19_04757 0.11 +0.0
148,422 - MPMX19_04757 0.11 -0.2
148,422 - MPMX19_04757 0.11 -1.2
148,619 + MPMX19_04757 0.40 +0.9
148,619 + MPMX19_04757 0.40 -0.5
148,619 + MPMX19_04757 0.40 -0.4
148,619 + MPMX19_04757 0.40 -0.4
148,620 - MPMX19_04757 0.40 -0.9
148,620 - MPMX19_04757 0.40 -1.2
148,700 + MPMX19_04757 0.52 -0.9
148,700 + MPMX19_04757 0.52 -2.1
148,701 - MPMX19_04757 0.53 -0.7
148,778 + MPMX19_04757 0.64 +0.0
148,778 + MPMX19_04757 0.64 -0.5
148,778 + MPMX19_04757 0.64 +0.1
148,778 + MPMX19_04757 0.64 -0.7
148,778 + MPMX19_04757 0.64 -0.2
148,778 + MPMX19_04757 0.64 -3.1
148,778 + MPMX19_04757 0.64 +1.0
148,778 + MPMX19_04757 0.64 +0.5
148,779 - MPMX19_04757 0.64 -0.4
148,779 - MPMX19_04757 0.64 +0.3
148,779 - MPMX19_04757 0.64 -0.1
148,779 - MPMX19_04757 0.64 +0.1
148,779 - MPMX19_04757 0.64 -0.7
148,779 - MPMX19_04757 0.64 +0.2
148,779 - MPMX19_04757 0.64 -0.6
148,779 - MPMX19_04757 0.64 -0.7
148,779 - MPMX19_04757 0.64 +1.0
148,779 - MPMX19_04757 0.64 +0.2
148,781 + MPMX19_04757 0.64 -1.6
148,781 + MPMX19_04757 0.64 +0.2
148,781 + MPMX19_04757 0.64 -0.6
148,781 + MPMX19_04757 0.64 -2.4
148,782 - MPMX19_04757 0.65 -1.0
148,782 - MPMX19_04757 0.65 -0.9
148,782 - MPMX19_04757 0.65 -0.1
148,782 - MPMX19_04757 0.65 -1.6
148,832 + MPMX19_04757 0.72 +0.2
148,832 + MPMX19_04757 0.72 -0.3
148,832 + MPMX19_04757 0.72 +0.0
148,832 + MPMX19_04757 0.72 +0.9
148,832 + MPMX19_04757 0.72 -0.1
148,832 + MPMX19_04757 0.72 -1.4
148,832 + MPMX19_04757 0.72 -2.3
148,832 + MPMX19_04757 0.72 +1.0
148,832 + MPMX19_04757 0.72 +0.1
148,832 + MPMX19_04757 0.72 +0.0
148,832 + MPMX19_04757 0.72 -0.4
148,832 + MPMX19_04757 0.72 -1.2
148,832 + MPMX19_04757 0.72 -0.4
148,833 - MPMX19_04757 0.72 -1.0
148,833 - MPMX19_04757 0.72 +1.1
148,833 - MPMX19_04757 0.72 +1.6
148,833 - MPMX19_04757 0.72 -0.2
148,833 - MPMX19_04757 0.72 -1.2
148,833 - MPMX19_04757 0.72 +1.1
148,833 - MPMX19_04757 0.72 -0.1
148,833 - MPMX19_04757 0.72 +0.6
148,833 - MPMX19_04757 0.72 -0.4
148,868 + MPMX19_04757 0.77 -0.8
148,868 + MPMX19_04757 0.77 -1.1
149,020 - +0.8
149,020 - -0.3
149,293 + MPMX19_04758 0.21 -1.0
149,293 + MPMX19_04758 0.21 -0.2
149,294 - MPMX19_04758 0.21 -0.7

Or see this region's nucleotide sequence