Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04735

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04733 and MPMX19_04734 overlap by 22 nucleotidesMPMX19_04734 and MPMX19_04735 are separated by 17 nucleotidesMPMX19_04735 and MPMX19_04736 overlap by 4 nucleotidesMPMX19_04736 and MPMX19_04737 are separated by 13 nucleotides MPMX19_04733: MPMX19_04733 - hypothetical protein, at 124,614 to 125,357 _04733 MPMX19_04734: MPMX19_04734 - 5,6,7,8-tetrahydromethanopterin hydro-lyase, at 125,336 to 125,701 _04734 MPMX19_04735: MPMX19_04735 - hypothetical protein, at 125,719 to 126,795 _04735 MPMX19_04736: MPMX19_04736 - hypothetical protein, at 126,792 to 127,709 _04736 MPMX19_04737: MPMX19_04737 - Methenyltetrahydromethanopterin cyclohydrolase, at 127,723 to 128,688 _04737 Position (kb) 125 126 127Strain fitness (log2 ratio) -2 -1 0 1at 124.734 kb on - strand, within MPMX19_04733at 124.776 kb on + strand, within MPMX19_04733at 124.776 kb on + strand, within MPMX19_04733at 124.776 kb on + strand, within MPMX19_04733at 124.776 kb on + strand, within MPMX19_04733at 124.776 kb on + strand, within MPMX19_04733at 124.776 kb on + strand, within MPMX19_04733at 124.776 kb on + strand, within MPMX19_04733at 124.776 kb on + strand, within MPMX19_04733at 124.776 kb on + strand, within MPMX19_04733at 124.776 kb on + strand, within MPMX19_04733at 124.776 kb on + strand, within MPMX19_04733at 124.777 kb on - strand, within MPMX19_04733at 124.777 kb on - strand, within MPMX19_04733at 124.777 kb on - strand, within MPMX19_04733at 124.777 kb on - strand, within MPMX19_04733at 124.777 kb on - strand, within MPMX19_04733at 124.777 kb on - strand, within MPMX19_04733at 124.777 kb on - strand, within MPMX19_04733at 124.777 kb on - strand, within MPMX19_04733at 124.777 kb on - strand, within MPMX19_04733at 124.777 kb on - strand, within MPMX19_04733at 124.777 kb on - strand, within MPMX19_04733at 124.777 kb on - strand, within MPMX19_04733at 124.777 kb on - strand, within MPMX19_04733at 124.777 kb on - strand, within MPMX19_04733at 124.912 kb on + strand, within MPMX19_04733at 125.448 kb on + strand, within MPMX19_04734at 125.448 kb on + strand, within MPMX19_04734at 125.448 kb on + strand, within MPMX19_04734at 125.448 kb on + strand, within MPMX19_04734at 125.448 kb on + strand, within MPMX19_04734at 125.448 kb on + strand, within MPMX19_04734at 125.448 kb on + strand, within MPMX19_04734at 125.449 kb on - strand, within MPMX19_04734at 125.449 kb on - strand, within MPMX19_04734at 125.449 kb on - strand, within MPMX19_04734at 125.449 kb on - strand, within MPMX19_04734at 125.449 kb on - strand, within MPMX19_04734at 125.824 kb on + strandat 125.824 kb on + strandat 125.824 kb on + strandat 125.824 kb on + strandat 125.824 kb on + strandat 125.825 kb on - strandat 125.825 kb on - strandat 125.825 kb on - strandat 125.840 kb on - strand, within MPMX19_04735at 125.840 kb on - strand, within MPMX19_04735at 126.272 kb on + strand, within MPMX19_04735at 126.272 kb on + strand, within MPMX19_04735at 126.272 kb on + strand, within MPMX19_04735at 126.272 kb on + strand, within MPMX19_04735at 126.273 kb on - strand, within MPMX19_04735at 126.273 kb on - strand, within MPMX19_04735at 126.273 kb on - strand, within MPMX19_04735at 126.273 kb on - strand, within MPMX19_04735at 126.273 kb on - strand, within MPMX19_04735at 126.577 kb on + strand, within MPMX19_04735at 126.577 kb on + strand, within MPMX19_04735at 126.577 kb on + strand, within MPMX19_04735at 126.577 kb on + strand, within MPMX19_04735at 126.578 kb on - strand, within MPMX19_04735at 126.578 kb on - strand, within MPMX19_04735at 126.578 kb on - strand, within MPMX19_04735at 126.578 kb on - strand, within MPMX19_04735at 126.578 kb on - strand, within MPMX19_04735at 126.979 kb on + strand, within MPMX19_04736at 126.979 kb on + strand, within MPMX19_04736at 126.980 kb on - strand, within MPMX19_04736at 126.980 kb on - strand, within MPMX19_04736at 127.174 kb on + strand, within MPMX19_04736at 127.174 kb on + strand, within MPMX19_04736at 127.174 kb on + strand, within MPMX19_04736at 127.174 kb on + strand, within MPMX19_04736at 127.174 kb on + strand, within MPMX19_04736at 127.174 kb on + strand, within MPMX19_04736at 127.175 kb on - strand, within MPMX19_04736at 127.175 kb on - strand, within MPMX19_04736at 127.175 kb on - strand, within MPMX19_04736at 127.175 kb on - strand, within MPMX19_04736at 127.175 kb on - strand, within MPMX19_04736at 127.189 kb on + strand, within MPMX19_04736at 127.189 kb on + strand, within MPMX19_04736at 127.189 kb on + strand, within MPMX19_04736at 127.189 kb on + strand, within MPMX19_04736at 127.189 kb on + strand, within MPMX19_04736at 127.189 kb on + strand, within MPMX19_04736at 127.189 kb on + strand, within MPMX19_04736at 127.189 kb on + strand, within MPMX19_04736at 127.189 kb on + strand, within MPMX19_04736at 127.190 kb on - strand, within MPMX19_04736at 127.190 kb on - strand, within MPMX19_04736at 127.190 kb on - strand, within MPMX19_04736at 127.190 kb on - strand, within MPMX19_04736at 127.190 kb on - strand, within MPMX19_04736at 127.190 kb on - strand, within MPMX19_04736at 127.190 kb on - strand, within MPMX19_04736at 127.190 kb on - strand, within MPMX19_04736at 127.608 kb on + strand, within MPMX19_04736at 127.608 kb on + strand, within MPMX19_04736at 127.765 kb on + strandat 127.766 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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124,734 - MPMX19_04733 0.16 -0.9
124,776 + MPMX19_04733 0.22 +0.0
124,776 + MPMX19_04733 0.22 +0.5
124,776 + MPMX19_04733 0.22 -0.9
124,776 + MPMX19_04733 0.22 +0.2
124,776 + MPMX19_04733 0.22 -0.6
124,776 + MPMX19_04733 0.22 -1.9
124,776 + MPMX19_04733 0.22 +0.9
124,776 + MPMX19_04733 0.22 -1.0
124,776 + MPMX19_04733 0.22 -0.4
124,776 + MPMX19_04733 0.22 -0.5
124,776 + MPMX19_04733 0.22 -1.2
124,777 - MPMX19_04733 0.22 -0.4
124,777 - MPMX19_04733 0.22 +0.4
124,777 - MPMX19_04733 0.22 -0.4
124,777 - MPMX19_04733 0.22 +0.6
124,777 - MPMX19_04733 0.22 -0.5
124,777 - MPMX19_04733 0.22 +0.0
124,777 - MPMX19_04733 0.22 -1.7
124,777 - MPMX19_04733 0.22 +0.5
124,777 - MPMX19_04733 0.22 -0.9
124,777 - MPMX19_04733 0.22 -0.9
124,777 - MPMX19_04733 0.22 +0.1
124,777 - MPMX19_04733 0.22 +0.2
124,777 - MPMX19_04733 0.22 -1.1
124,777 - MPMX19_04733 0.22 +0.0
124,912 + MPMX19_04733 0.40 +1.6
125,448 + MPMX19_04734 0.31 -0.5
125,448 + MPMX19_04734 0.31 -0.3
125,448 + MPMX19_04734 0.31 +0.1
125,448 + MPMX19_04734 0.31 +1.0
125,448 + MPMX19_04734 0.31 -1.6
125,448 + MPMX19_04734 0.31 +0.1
125,448 + MPMX19_04734 0.31 +0.3
125,449 - MPMX19_04734 0.31 +0.1
125,449 - MPMX19_04734 0.31 -0.3
125,449 - MPMX19_04734 0.31 +1.7
125,449 - MPMX19_04734 0.31 -0.1
125,449 - MPMX19_04734 0.31 -0.4
125,824 + +0.9
125,824 + -0.1
125,824 + -0.4
125,824 + -0.3
125,824 + -0.6
125,825 - -0.5
125,825 - +0.7
125,825 - -0.3
125,840 - MPMX19_04735 0.11 -2.3
125,840 - MPMX19_04735 0.11 -0.1
126,272 + MPMX19_04735 0.51 +1.2
126,272 + MPMX19_04735 0.51 +0.4
126,272 + MPMX19_04735 0.51 +0.5
126,272 + MPMX19_04735 0.51 -0.3
126,273 - MPMX19_04735 0.51 +0.0
126,273 - MPMX19_04735 0.51 -0.2
126,273 - MPMX19_04735 0.51 -0.9
126,273 - MPMX19_04735 0.51 -1.4
126,273 - MPMX19_04735 0.51 -0.2
126,577 + MPMX19_04735 0.80 +0.0
126,577 + MPMX19_04735 0.80 +0.4
126,577 + MPMX19_04735 0.80 +0.9
126,577 + MPMX19_04735 0.80 -1.9
126,578 - MPMX19_04735 0.80 +0.7
126,578 - MPMX19_04735 0.80 -0.5
126,578 - MPMX19_04735 0.80 +0.3
126,578 - MPMX19_04735 0.80 -0.1
126,578 - MPMX19_04735 0.80 +0.1
126,979 + MPMX19_04736 0.20 +0.0
126,979 + MPMX19_04736 0.20 +0.7
126,980 - MPMX19_04736 0.20 -0.3
126,980 - MPMX19_04736 0.20 -0.6
127,174 + MPMX19_04736 0.42 +0.1
127,174 + MPMX19_04736 0.42 +0.8
127,174 + MPMX19_04736 0.42 +0.6
127,174 + MPMX19_04736 0.42 +0.6
127,174 + MPMX19_04736 0.42 +1.6
127,174 + MPMX19_04736 0.42 -1.4
127,175 - MPMX19_04736 0.42 +0.4
127,175 - MPMX19_04736 0.42 -0.1
127,175 - MPMX19_04736 0.42 -1.5
127,175 - MPMX19_04736 0.42 +0.0
127,175 - MPMX19_04736 0.42 -0.5
127,189 + MPMX19_04736 0.43 +0.0
127,189 + MPMX19_04736 0.43 +0.9
127,189 + MPMX19_04736 0.43 +0.6
127,189 + MPMX19_04736 0.43 -0.4
127,189 + MPMX19_04736 0.43 -0.7
127,189 + MPMX19_04736 0.43 -2.1
127,189 + MPMX19_04736 0.43 +0.1
127,189 + MPMX19_04736 0.43 +1.0
127,189 + MPMX19_04736 0.43 +0.0
127,190 - MPMX19_04736 0.43 -0.3
127,190 - MPMX19_04736 0.43 -0.5
127,190 - MPMX19_04736 0.43 -0.7
127,190 - MPMX19_04736 0.43 -1.1
127,190 - MPMX19_04736 0.43 -0.5
127,190 - MPMX19_04736 0.43 -2.5
127,190 - MPMX19_04736 0.43 +1.4
127,190 - MPMX19_04736 0.43 +0.7
127,608 + MPMX19_04736 0.89 -0.3
127,608 + MPMX19_04736 0.89 -0.5
127,765 + -1.5
127,766 - +0.1

Or see this region's nucleotide sequence