Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04701

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04700 and MPMX19_04701 overlap by 4 nucleotidesMPMX19_04701 and MPMX19_04702 are separated by 10 nucleotidesMPMX19_04702 and MPMX19_04703 are separated by 66 nucleotides MPMX19_04700: MPMX19_04700 - Adaptive-response sensory-kinase SasA, at 85,851 to 87,530 _04700 MPMX19_04701: MPMX19_04701 - Transcriptional regulatory protein FixJ, at 87,527 to 88,171 _04701 MPMX19_04702: MPMX19_04702 - hypothetical protein, at 88,182 to 88,931 _04702 MPMX19_04703: MPMX19_04703 - L-serine dehydratase TdcG, at 88,998 to 90,380 _04703 Position (kb) 87 88 89Strain fitness (log2 ratio) -1 0 1 2 3at 86.547 kb on + strand, within MPMX19_04700at 86.547 kb on + strand, within MPMX19_04700at 86.548 kb on - strand, within MPMX19_04700at 86.726 kb on + strand, within MPMX19_04700at 86.726 kb on + strand, within MPMX19_04700at 86.726 kb on + strand, within MPMX19_04700at 86.726 kb on + strand, within MPMX19_04700at 86.727 kb on - strand, within MPMX19_04700at 86.727 kb on - strand, within MPMX19_04700at 86.841 kb on + strand, within MPMX19_04700at 87.645 kb on + strand, within MPMX19_04701at 87.646 kb on - strand, within MPMX19_04701at 88.397 kb on + strand, within MPMX19_04702at 88.398 kb on - strand, within MPMX19_04702at 88.398 kb on - strand, within MPMX19_04702at 88.766 kb on + strand, within MPMX19_04702at 88.766 kb on + strand, within MPMX19_04702at 88.766 kb on + strand, within MPMX19_04702at 88.767 kb on - strand, within MPMX19_04702at 88.767 kb on - strand, within MPMX19_04702at 88.778 kb on + strand, within MPMX19_04702at 88.778 kb on + strand, within MPMX19_04702at 88.778 kb on + strand, within MPMX19_04702at 88.778 kb on + strand, within MPMX19_04702at 88.778 kb on + strand, within MPMX19_04702at 88.778 kb on + strand, within MPMX19_04702at 88.778 kb on + strand, within MPMX19_04702at 88.778 kb on + strand, within MPMX19_04702at 88.778 kb on + strand, within MPMX19_04702at 88.778 kb on + strand, within MPMX19_04702at 88.778 kb on + strand, within MPMX19_04702at 88.778 kb on + strand, within MPMX19_04702at 88.778 kb on + strand, within MPMX19_04702at 88.778 kb on + strand, within MPMX19_04702at 88.778 kb on + strand, within MPMX19_04702at 88.779 kb on - strand, within MPMX19_04702at 88.779 kb on - strand, within MPMX19_04702at 88.779 kb on - strand, within MPMX19_04702at 88.779 kb on - strand, within MPMX19_04702at 88.779 kb on - strand, within MPMX19_04702at 88.779 kb on - strand, within MPMX19_04702at 88.779 kb on - strand, within MPMX19_04702at 88.779 kb on - strand, within MPMX19_04702at 88.779 kb on - strand, within MPMX19_04702at 88.779 kb on - strand, within MPMX19_04702at 88.779 kb on - strand, within MPMX19_04702at 88.780 kb on + strand, within MPMX19_04702at 88.780 kb on + strand, within MPMX19_04702at 88.780 kb on + strand, within MPMX19_04702at 88.780 kb on + strand, within MPMX19_04702at 88.780 kb on + strand, within MPMX19_04702at 88.781 kb on - strand, within MPMX19_04702at 88.781 kb on - strand, within MPMX19_04702at 88.781 kb on - strand, within MPMX19_04702at 88.781 kb on - strand, within MPMX19_04702at 88.781 kb on - strand, within MPMX19_04702at 88.781 kb on - strand, within MPMX19_04702at 88.781 kb on - strand, within MPMX19_04702at 88.781 kb on - strand, within MPMX19_04702at 88.781 kb on - strand, within MPMX19_04702at 88.911 kb on + strandat 88.912 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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86,547 + MPMX19_04700 0.41 +0.3
86,547 + MPMX19_04700 0.41 -0.2
86,548 - MPMX19_04700 0.41 +0.4
86,726 + MPMX19_04700 0.52 +1.0
86,726 + MPMX19_04700 0.52 +1.2
86,726 + MPMX19_04700 0.52 +0.7
86,726 + MPMX19_04700 0.52 +0.0
86,727 - MPMX19_04700 0.52 +0.6
86,727 - MPMX19_04700 0.52 +1.4
86,841 + MPMX19_04700 0.59 +0.9
87,645 + MPMX19_04701 0.18 -1.5
87,646 - MPMX19_04701 0.18 -1.3
88,397 + MPMX19_04702 0.29 +0.7
88,398 - MPMX19_04702 0.29 -1.3
88,398 - MPMX19_04702 0.29 +0.5
88,766 + MPMX19_04702 0.78 -1.0
88,766 + MPMX19_04702 0.78 +0.5
88,766 + MPMX19_04702 0.78 +1.6
88,767 - MPMX19_04702 0.78 +0.3
88,767 - MPMX19_04702 0.78 +3.6
88,778 + MPMX19_04702 0.79 -1.3
88,778 + MPMX19_04702 0.79 -1.6
88,778 + MPMX19_04702 0.79 -1.4
88,778 + MPMX19_04702 0.79 +0.0
88,778 + MPMX19_04702 0.79 -0.7
88,778 + MPMX19_04702 0.79 -0.1
88,778 + MPMX19_04702 0.79 -1.7
88,778 + MPMX19_04702 0.79 -1.2
88,778 + MPMX19_04702 0.79 -1.1
88,778 + MPMX19_04702 0.79 -0.4
88,778 + MPMX19_04702 0.79 -1.2
88,778 + MPMX19_04702 0.79 -0.4
88,778 + MPMX19_04702 0.79 -1.0
88,778 + MPMX19_04702 0.79 +1.1
88,778 + MPMX19_04702 0.79 -0.4
88,779 - MPMX19_04702 0.80 -0.6
88,779 - MPMX19_04702 0.80 +0.8
88,779 - MPMX19_04702 0.80 +1.9
88,779 - MPMX19_04702 0.80 -0.1
88,779 - MPMX19_04702 0.80 -0.6
88,779 - MPMX19_04702 0.80 +1.9
88,779 - MPMX19_04702 0.80 -1.4
88,779 - MPMX19_04702 0.80 +0.0
88,779 - MPMX19_04702 0.80 -1.5
88,779 - MPMX19_04702 0.80 -1.7
88,779 - MPMX19_04702 0.80 -0.7
88,780 + MPMX19_04702 0.80 +0.6
88,780 + MPMX19_04702 0.80 -1.7
88,780 + MPMX19_04702 0.80 -0.1
88,780 + MPMX19_04702 0.80 -0.1
88,780 + MPMX19_04702 0.80 +0.6
88,781 - MPMX19_04702 0.80 +0.5
88,781 - MPMX19_04702 0.80 -1.4
88,781 - MPMX19_04702 0.80 +0.6
88,781 - MPMX19_04702 0.80 -0.4
88,781 - MPMX19_04702 0.80 -0.6
88,781 - MPMX19_04702 0.80 -1.2
88,781 - MPMX19_04702 0.80 -1.3
88,781 - MPMX19_04702 0.80 +0.7
88,781 - MPMX19_04702 0.80 +0.1
88,911 + -0.3
88,912 - +0.5

Or see this region's nucleotide sequence