Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04699 and MPMX19_04700 are separated by 235 nucleotides MPMX19_04700 and MPMX19_04701 overlap by 4 nucleotides MPMX19_04701 and MPMX19_04702 are separated by 10 nucleotides
MPMX19_04699: MPMX19_04699 - hypothetical protein, at 84,746 to 85,615
_04699
MPMX19_04700: MPMX19_04700 - Adaptive-response sensory-kinase SasA, at 85,851 to 87,530
_04700
MPMX19_04701: MPMX19_04701 - Transcriptional regulatory protein FixJ, at 87,527 to 88,171
_04701
MPMX19_04702: MPMX19_04702 - hypothetical protein, at 88,182 to 88,931
_04702
Position (kb) 85
86
87
88 Strain fitness (log2 ratio) -2
-1
0
1 at 84.919 kb on - strand, within MPMX19_04699 at 84.919 kb on - strand, within MPMX19_04699 at 84.919 kb on - strand, within MPMX19_04699 at 84.919 kb on - strand, within MPMX19_04699 at 85.192 kb on - strand, within MPMX19_04699 at 85.192 kb on - strand, within MPMX19_04699 at 85.341 kb on + strand, within MPMX19_04699 at 85.473 kb on + strand, within MPMX19_04699 at 85.474 kb on - strand, within MPMX19_04699 at 85.745 kb on + strand at 85.746 kb on - strand at 85.746 kb on - strand at 85.788 kb on - strand at 85.791 kb on - strand at 85.794 kb on - strand at 85.839 kb on + strand at 85.840 kb on - strand at 85.893 kb on + strand at 85.894 kb on - strand at 85.894 kb on - strand at 86.080 kb on + strand, within MPMX19_04700 at 86.080 kb on + strand, within MPMX19_04700 at 86.081 kb on - strand, within MPMX19_04700 at 86.325 kb on + strand, within MPMX19_04700 at 86.325 kb on + strand, within MPMX19_04700 at 86.326 kb on - strand, within MPMX19_04700 at 86.547 kb on + strand, within MPMX19_04700 at 86.547 kb on + strand, within MPMX19_04700 at 86.548 kb on - strand, within MPMX19_04700 at 86.726 kb on + strand, within MPMX19_04700 at 86.726 kb on + strand, within MPMX19_04700 at 86.726 kb on + strand, within MPMX19_04700 at 86.726 kb on + strand, within MPMX19_04700 at 86.727 kb on - strand, within MPMX19_04700 at 86.727 kb on - strand, within MPMX19_04700 at 86.841 kb on + strand, within MPMX19_04700 at 87.645 kb on + strand, within MPMX19_04701 at 87.646 kb on - strand, within MPMX19_04701 at 88.397 kb on + strand, within MPMX19_04702 at 88.398 kb on - strand, within MPMX19_04702 at 88.398 kb on - strand, within MPMX19_04702
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 84,919 - MPMX19_04699 0.20 +0.8 84,919 - MPMX19_04699 0.20 +0.7 84,919 - MPMX19_04699 0.20 -0.2 84,919 - MPMX19_04699 0.20 -0.5 85,192 - MPMX19_04699 0.51 -0.4 85,192 - MPMX19_04699 0.51 +0.9 85,341 + MPMX19_04699 0.68 -0.5 85,473 + MPMX19_04699 0.84 -1.3 85,474 - MPMX19_04699 0.84 -1.1 85,745 + +0.1 85,746 - +0.6 85,746 - -0.8 85,788 - +0.4 85,791 - -1.2 85,794 - +1.6 85,839 + -1.0 85,840 - -1.4 85,893 + -0.9 85,894 - -0.1 85,894 - +0.1 86,080 + MPMX19_04700 0.14 +0.6 86,080 + MPMX19_04700 0.14 -0.4 86,081 - MPMX19_04700 0.14 -2.0 86,325 + MPMX19_04700 0.28 -0.9 86,325 + MPMX19_04700 0.28 +0.9 86,326 - MPMX19_04700 0.28 -0.6 86,547 + MPMX19_04700 0.41 +0.3 86,547 + MPMX19_04700 0.41 -0.2 86,548 - MPMX19_04700 0.41 +0.4 86,726 + MPMX19_04700 0.52 +1.0 86,726 + MPMX19_04700 0.52 +1.2 86,726 + MPMX19_04700 0.52 +0.7 86,726 + MPMX19_04700 0.52 +0.0 86,727 - MPMX19_04700 0.52 +0.6 86,727 - MPMX19_04700 0.52 +1.4 86,841 + MPMX19_04700 0.59 +0.9 87,645 + MPMX19_04701 0.18 -1.5 87,646 - MPMX19_04701 0.18 -1.3 88,397 + MPMX19_04702 0.29 +0.7 88,398 - MPMX19_04702 0.29 -1.3 88,398 - MPMX19_04702 0.29 +0.5
Or see this region's nucleotide sequence