Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04691 and MPMX19_04692 are separated by 23 nucleotides MPMX19_04692 and MPMX19_04693 overlap by 4 nucleotides MPMX19_04693 and MPMX19_04694 overlap by 4 nucleotides MPMX19_04694 and MPMX19_04695 overlap by 4 nucleotides
MPMX19_04691: MPMX19_04691 - hypothetical protein, at 77,297 to 78,025
_04691
MPMX19_04692: MPMX19_04692 - hypothetical protein, at 78,049 to 78,468
_04692
MPMX19_04693: MPMX19_04693 - hypothetical protein, at 78,465 to 78,746
_04693
MPMX19_04694: MPMX19_04694 - Na(+)/H(+) antiporter subunit E1, at 78,743 to 79,243
_04694
MPMX19_04695: MPMX19_04695 - Na(+)/H(+) antiporter subunit D, at 79,240 to 80,868
_04695
Position (kb) 78
79
80 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 77.780 kb on + strand, within MPMX19_04691 at 77.780 kb on + strand, within MPMX19_04691 at 77.780 kb on + strand, within MPMX19_04691 at 77.780 kb on + strand, within MPMX19_04691 at 77.780 kb on + strand, within MPMX19_04691 at 77.780 kb on + strand, within MPMX19_04691 at 77.780 kb on + strand, within MPMX19_04691 at 77.780 kb on + strand, within MPMX19_04691 at 77.780 kb on + strand, within MPMX19_04691 at 77.781 kb on - strand, within MPMX19_04691 at 77.781 kb on - strand, within MPMX19_04691 at 77.781 kb on - strand, within MPMX19_04691 at 77.781 kb on - strand, within MPMX19_04691 at 77.781 kb on - strand, within MPMX19_04691 at 77.781 kb on - strand, within MPMX19_04691 at 77.781 kb on - strand, within MPMX19_04691 at 77.781 kb on - strand, within MPMX19_04691 at 77.806 kb on + strand, within MPMX19_04691 at 77.828 kb on + strand, within MPMX19_04691 at 77.828 kb on + strand, within MPMX19_04691 at 77.829 kb on - strand, within MPMX19_04691 at 77.829 kb on - strand, within MPMX19_04691 at 77.829 kb on - strand, within MPMX19_04691 at 77.829 kb on - strand, within MPMX19_04691 at 77.829 kb on - strand, within MPMX19_04691 at 77.829 kb on - strand, within MPMX19_04691 at 77.829 kb on - strand, within MPMX19_04691 at 77.829 kb on - strand, within MPMX19_04691 at 78.042 kb on + strand at 78.042 kb on + strand at 78.168 kb on - strand, within MPMX19_04692 at 78.337 kb on + strand, within MPMX19_04692 at 78.337 kb on + strand, within MPMX19_04692 at 78.338 kb on - strand, within MPMX19_04692 at 78.338 kb on - strand, within MPMX19_04692 at 78.338 kb on - strand, within MPMX19_04692 at 78.347 kb on + strand, within MPMX19_04692 at 78.347 kb on + strand, within MPMX19_04692 at 78.347 kb on + strand, within MPMX19_04692 at 78.348 kb on - strand, within MPMX19_04692 at 78.348 kb on - strand, within MPMX19_04692 at 78.348 kb on - strand, within MPMX19_04692 at 78.348 kb on - strand, within MPMX19_04692 at 78.348 kb on - strand, within MPMX19_04692 at 78.348 kb on - strand, within MPMX19_04692 at 78.556 kb on + strand, within MPMX19_04693 at 78.556 kb on + strand, within MPMX19_04693 at 78.556 kb on + strand, within MPMX19_04693 at 78.557 kb on - strand, within MPMX19_04693 at 78.557 kb on - strand, within MPMX19_04693 at 78.613 kb on + strand, within MPMX19_04693 at 78.613 kb on + strand, within MPMX19_04693 at 78.613 kb on + strand, within MPMX19_04693 at 78.613 kb on + strand, within MPMX19_04693 at 78.613 kb on + strand, within MPMX19_04693 at 78.613 kb on + strand, within MPMX19_04693 at 78.614 kb on - strand, within MPMX19_04693 at 78.614 kb on - strand, within MPMX19_04693 at 78.614 kb on - strand, within MPMX19_04693 at 78.614 kb on - strand, within MPMX19_04693 at 78.614 kb on - strand, within MPMX19_04693 at 78.614 kb on - strand, within MPMX19_04693 at 78.614 kb on - strand, within MPMX19_04693 at 78.774 kb on + strand at 78.775 kb on - strand at 78.775 kb on - strand at 78.858 kb on + strand, within MPMX19_04694 at 78.858 kb on + strand, within MPMX19_04694 at 78.858 kb on + strand, within MPMX19_04694 at 78.858 kb on + strand, within MPMX19_04694 at 78.859 kb on - strand, within MPMX19_04694 at 78.859 kb on - strand, within MPMX19_04694 at 78.919 kb on - strand, within MPMX19_04694 at 79.213 kb on - strand at 79.300 kb on - strand at 79.300 kb on - strand at 79.300 kb on - strand at 79.300 kb on - strand at 79.300 kb on - strand at 79.301 kb on + strand at 79.301 kb on + strand at 79.301 kb on + strand at 79.301 kb on + strand at 79.301 kb on + strand at 79.301 kb on + strand at 79.301 kb on + strand at 79.301 kb on + strand at 79.301 kb on + strand at 79.301 kb on + strand at 79.301 kb on + strand at 79.301 kb on + strand at 79.301 kb on + strand at 79.302 kb on - strand at 79.302 kb on - strand at 79.302 kb on - strand at 79.302 kb on - strand at 79.302 kb on - strand at 79.302 kb on - strand at 79.302 kb on - strand at 79.302 kb on - strand at 79.302 kb on - strand at 79.302 kb on - strand at 79.302 kb on - strand at 79.302 kb on - strand at 79.343 kb on + strand at 79.343 kb on + strand at 79.343 kb on + strand at 79.343 kb on + strand at 79.343 kb on + strand at 79.343 kb on + strand at 79.343 kb on + strand at 79.343 kb on + strand at 79.343 kb on + strand at 79.343 kb on + strand at 79.343 kb on + strand at 79.343 kb on + strand at 79.344 kb on - strand at 79.344 kb on - strand at 79.344 kb on - strand at 79.344 kb on - strand at 79.344 kb on - strand at 79.344 kb on - strand at 79.853 kb on + strand, within MPMX19_04695 at 79.853 kb on + strand, within MPMX19_04695 at 79.853 kb on + strand, within MPMX19_04695 at 79.853 kb on + strand, within MPMX19_04695 at 79.854 kb on - strand, within MPMX19_04695 at 79.854 kb on - strand, within MPMX19_04695 at 79.854 kb on - strand, within MPMX19_04695 at 79.854 kb on - strand, within MPMX19_04695 at 79.969 kb on + strand, within MPMX19_04695 at 80.090 kb on + strand, within MPMX19_04695 at 80.090 kb on + strand, within MPMX19_04695 at 80.090 kb on + strand, within MPMX19_04695 at 80.090 kb on + strand, within MPMX19_04695 at 80.090 kb on + strand, within MPMX19_04695 at 80.090 kb on + strand, within MPMX19_04695 at 80.090 kb on + strand, within MPMX19_04695 at 80.090 kb on + strand, within MPMX19_04695 at 80.090 kb on + strand, within MPMX19_04695 at 80.090 kb on + strand, within MPMX19_04695 at 80.090 kb on + strand, within MPMX19_04695 at 80.090 kb on + strand, within MPMX19_04695 at 80.090 kb on + strand, within MPMX19_04695 at 80.090 kb on + strand, within MPMX19_04695 at 80.090 kb on + strand, within MPMX19_04695 at 80.090 kb on + strand, within MPMX19_04695 at 80.090 kb on + strand, within MPMX19_04695 at 80.090 kb on + strand, within MPMX19_04695 at 80.090 kb on + strand, within MPMX19_04695 at 80.090 kb on + strand, within MPMX19_04695 at 80.090 kb on + strand, within MPMX19_04695 at 80.091 kb on - strand, within MPMX19_04695 at 80.091 kb on - strand, within MPMX19_04695 at 80.091 kb on - strand, within MPMX19_04695 at 80.091 kb on - strand, within MPMX19_04695 at 80.091 kb on - strand, within MPMX19_04695 at 80.091 kb on - strand, within MPMX19_04695 at 80.091 kb on - strand, within MPMX19_04695 at 80.091 kb on - strand, within MPMX19_04695 at 80.091 kb on - strand, within MPMX19_04695 at 80.091 kb on - strand, within MPMX19_04695 at 80.091 kb on - strand, within MPMX19_04695 at 80.091 kb on - strand, within MPMX19_04695 at 80.091 kb on - strand, within MPMX19_04695 at 80.091 kb on - strand, within MPMX19_04695 at 80.091 kb on - strand, within MPMX19_04695 at 80.091 kb on - strand, within MPMX19_04695 at 80.150 kb on + strand, within MPMX19_04695 at 80.150 kb on + strand, within MPMX19_04695 at 80.150 kb on + strand, within MPMX19_04695 at 80.150 kb on + strand, within MPMX19_04695 at 80.150 kb on + strand, within MPMX19_04695 at 80.150 kb on + strand, within MPMX19_04695 at 80.150 kb on + strand, within MPMX19_04695 at 80.150 kb on + strand, within MPMX19_04695 at 80.150 kb on + strand, within MPMX19_04695 at 80.150 kb on + strand, within MPMX19_04695 at 80.150 kb on + strand, within MPMX19_04695 at 80.151 kb on - strand, within MPMX19_04695 at 80.151 kb on - strand, within MPMX19_04695 at 80.151 kb on - strand, within MPMX19_04695 at 80.151 kb on - strand, within MPMX19_04695 at 80.151 kb on - strand, within MPMX19_04695 at 80.151 kb on - strand, within MPMX19_04695 at 80.151 kb on - strand, within MPMX19_04695 at 80.151 kb on - strand, within MPMX19_04695 at 80.151 kb on - strand, within MPMX19_04695
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 77,780 + MPMX19_04691 0.66 -0.4 77,780 + MPMX19_04691 0.66 +0.0 77,780 + MPMX19_04691 0.66 -0.4 77,780 + MPMX19_04691 0.66 -0.5 77,780 + MPMX19_04691 0.66 -1.5 77,780 + MPMX19_04691 0.66 -0.2 77,780 + MPMX19_04691 0.66 -1.0 77,780 + MPMX19_04691 0.66 +0.4 77,780 + MPMX19_04691 0.66 -0.5 77,781 - MPMX19_04691 0.66 -2.0 77,781 - MPMX19_04691 0.66 -0.6 77,781 - MPMX19_04691 0.66 -0.1 77,781 - MPMX19_04691 0.66 -0.4 77,781 - MPMX19_04691 0.66 -1.7 77,781 - MPMX19_04691 0.66 -0.5 77,781 - MPMX19_04691 0.66 -0.6 77,781 - MPMX19_04691 0.66 -0.7 77,806 + MPMX19_04691 0.70 +0.1 77,828 + MPMX19_04691 0.73 -1.9 77,828 + MPMX19_04691 0.73 -1.1 77,829 - MPMX19_04691 0.73 -1.4 77,829 - MPMX19_04691 0.73 -0.5 77,829 - MPMX19_04691 0.73 -1.0 77,829 - MPMX19_04691 0.73 +0.4 77,829 - MPMX19_04691 0.73 +0.1 77,829 - MPMX19_04691 0.73 -2.3 77,829 - MPMX19_04691 0.73 +0.8 77,829 - MPMX19_04691 0.73 +0.6 78,042 + +0.1 78,042 + -1.0 78,168 - MPMX19_04692 0.28 +0.4 78,337 + MPMX19_04692 0.69 -1.5 78,337 + MPMX19_04692 0.69 -0.2 78,338 - MPMX19_04692 0.69 -0.6 78,338 - MPMX19_04692 0.69 -0.5 78,338 - MPMX19_04692 0.69 -0.3 78,347 + MPMX19_04692 0.71 +0.3 78,347 + MPMX19_04692 0.71 -0.7 78,347 + MPMX19_04692 0.71 +0.0 78,348 - MPMX19_04692 0.71 -0.4 78,348 - MPMX19_04692 0.71 +0.2 78,348 - MPMX19_04692 0.71 -0.6 78,348 - MPMX19_04692 0.71 -0.1 78,348 - MPMX19_04692 0.71 -1.0 78,348 - MPMX19_04692 0.71 +0.8 78,556 + MPMX19_04693 0.32 -0.2 78,556 + MPMX19_04693 0.32 +0.1 78,556 + MPMX19_04693 0.32 +0.5 78,557 - MPMX19_04693 0.33 +0.5 78,557 - MPMX19_04693 0.33 +0.7 78,613 + MPMX19_04693 0.52 +1.2 78,613 + MPMX19_04693 0.52 +0.3 78,613 + MPMX19_04693 0.52 +0.3 78,613 + MPMX19_04693 0.52 -1.4 78,613 + MPMX19_04693 0.52 +0.5 78,613 + MPMX19_04693 0.52 -0.1 78,614 - MPMX19_04693 0.53 +0.9 78,614 - MPMX19_04693 0.53 -0.1 78,614 - MPMX19_04693 0.53 -0.1 78,614 - MPMX19_04693 0.53 +0.6 78,614 - MPMX19_04693 0.53 +0.2 78,614 - MPMX19_04693 0.53 -0.4 78,614 - MPMX19_04693 0.53 -0.8 78,774 + -0.2 78,775 - -0.5 78,775 - +0.2 78,858 + MPMX19_04694 0.23 -1.1 78,858 + MPMX19_04694 0.23 -1.9 78,858 + MPMX19_04694 0.23 -0.9 78,858 + MPMX19_04694 0.23 -1.5 78,859 - MPMX19_04694 0.23 +0.2 78,859 - MPMX19_04694 0.23 -0.7 78,919 - MPMX19_04694 0.35 -0.4 79,213 - +1.1 79,300 - -1.7 79,300 - -0.6 79,300 - -1.3 79,300 - -0.6 79,300 - -0.6 79,301 + -0.4 79,301 + +0.7 79,301 + -0.7 79,301 + -0.2 79,301 + +1.4 79,301 + +0.4 79,301 + -0.3 79,301 + +0.2 79,301 + -1.4 79,301 + +0.4 79,301 + +0.0 79,301 + -0.6 79,301 + -1.3 79,302 - +0.0 79,302 - -0.4 79,302 - -2.1 79,302 - +0.1 79,302 - +0.7 79,302 - +0.2 79,302 - -1.7 79,302 - -0.2 79,302 - +0.7 79,302 - -0.8 79,302 - -0.3 79,302 - +2.1 79,343 + -1.4 79,343 + -0.1 79,343 + +0.6 79,343 + -0.9 79,343 + -0.5 79,343 + +0.2 79,343 + -0.7 79,343 + -2.4 79,343 + +0.4 79,343 + +0.7 79,343 + -0.8 79,343 + -1.0 79,344 - +0.4 79,344 - -1.4 79,344 - +0.3 79,344 - -0.7 79,344 - +0.5 79,344 - -0.4 79,853 + MPMX19_04695 0.38 -0.4 79,853 + MPMX19_04695 0.38 +0.6 79,853 + MPMX19_04695 0.38 -0.6 79,853 + MPMX19_04695 0.38 -2.7 79,854 - MPMX19_04695 0.38 +0.0 79,854 - MPMX19_04695 0.38 -0.8 79,854 - MPMX19_04695 0.38 -3.4 79,854 - MPMX19_04695 0.38 +1.2 79,969 + MPMX19_04695 0.45 +0.6 80,090 + MPMX19_04695 0.52 +0.3 80,090 + MPMX19_04695 0.52 +1.6 80,090 + MPMX19_04695 0.52 -0.4 80,090 + MPMX19_04695 0.52 +0.3 80,090 + MPMX19_04695 0.52 -0.4 80,090 + MPMX19_04695 0.52 -0.2 80,090 + MPMX19_04695 0.52 -1.0 80,090 + MPMX19_04695 0.52 +2.6 80,090 + MPMX19_04695 0.52 -0.8 80,090 + MPMX19_04695 0.52 +0.1 80,090 + MPMX19_04695 0.52 -1.5 80,090 + MPMX19_04695 0.52 -0.9 80,090 + MPMX19_04695 0.52 -0.9 80,090 + MPMX19_04695 0.52 -0.2 80,090 + MPMX19_04695 0.52 -1.4 80,090 + MPMX19_04695 0.52 -0.3 80,090 + MPMX19_04695 0.52 -1.4 80,090 + MPMX19_04695 0.52 -1.5 80,090 + MPMX19_04695 0.52 +0.2 80,090 + MPMX19_04695 0.52 +0.3 80,090 + MPMX19_04695 0.52 -0.5 80,091 - MPMX19_04695 0.52 -1.4 80,091 - MPMX19_04695 0.52 -0.4 80,091 - MPMX19_04695 0.52 -0.4 80,091 - MPMX19_04695 0.52 -1.2 80,091 - MPMX19_04695 0.52 -1.0 80,091 - MPMX19_04695 0.52 -0.3 80,091 - MPMX19_04695 0.52 -0.7 80,091 - MPMX19_04695 0.52 +0.3 80,091 - MPMX19_04695 0.52 +0.1 80,091 - MPMX19_04695 0.52 -1.5 80,091 - MPMX19_04695 0.52 -0.8 80,091 - MPMX19_04695 0.52 +0.0 80,091 - MPMX19_04695 0.52 -0.1 80,091 - MPMX19_04695 0.52 -0.7 80,091 - MPMX19_04695 0.52 -0.6 80,091 - MPMX19_04695 0.52 -0.3 80,150 + MPMX19_04695 0.56 -0.3 80,150 + MPMX19_04695 0.56 -0.2 80,150 + MPMX19_04695 0.56 +0.7 80,150 + MPMX19_04695 0.56 +0.2 80,150 + MPMX19_04695 0.56 +1.2 80,150 + MPMX19_04695 0.56 -0.3 80,150 + MPMX19_04695 0.56 +0.5 80,150 + MPMX19_04695 0.56 -1.0 80,150 + MPMX19_04695 0.56 -0.1 80,150 + MPMX19_04695 0.56 -0.1 80,150 + MPMX19_04695 0.56 +0.2 80,151 - MPMX19_04695 0.56 -1.1 80,151 - MPMX19_04695 0.56 -0.1 80,151 - MPMX19_04695 0.56 +0.9 80,151 - MPMX19_04695 0.56 -0.2 80,151 - MPMX19_04695 0.56 -0.3 80,151 - MPMX19_04695 0.56 -0.5 80,151 - MPMX19_04695 0.56 -0.3 80,151 - MPMX19_04695 0.56 +0.6 80,151 - MPMX19_04695 0.56 +0.4
Or see this region's nucleotide sequence