Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04629

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04628 and MPMX19_04629 are separated by 41 nucleotidesMPMX19_04629 and MPMX19_04630 overlap by 4 nucleotides MPMX19_04628: MPMX19_04628 - hypothetical protein, at 1,533 to 2,918 _04628 MPMX19_04629: MPMX19_04629 - D-inositol-3-phosphate glycosyltransferase, at 2,960 to 4,807 _04629 MPMX19_04630: MPMX19_04630 - hypothetical protein, at 4,804 to 6,984 _04630 Position (kb) 2 3 4 5Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2.046 kb on + strand, within MPMX19_04628at 2.046 kb on + strand, within MPMX19_04628at 2.046 kb on + strand, within MPMX19_04628at 2.047 kb on - strand, within MPMX19_04628at 2.047 kb on - strand, within MPMX19_04628at 2.143 kb on + strand, within MPMX19_04628at 2.143 kb on + strand, within MPMX19_04628at 2.143 kb on + strand, within MPMX19_04628at 2.144 kb on - strand, within MPMX19_04628at 2.144 kb on - strand, within MPMX19_04628at 2.205 kb on + strand, within MPMX19_04628at 2.206 kb on - strand, within MPMX19_04628at 2.206 kb on - strand, within MPMX19_04628at 2.307 kb on + strand, within MPMX19_04628at 2.307 kb on + strand, within MPMX19_04628at 2.307 kb on + strand, within MPMX19_04628at 2.307 kb on + strand, within MPMX19_04628at 2.308 kb on - strand, within MPMX19_04628at 2.308 kb on - strand, within MPMX19_04628at 2.308 kb on - strand, within MPMX19_04628at 2.308 kb on - strand, within MPMX19_04628at 2.505 kb on + strand, within MPMX19_04628at 2.505 kb on + strand, within MPMX19_04628at 2.505 kb on + strand, within MPMX19_04628at 2.505 kb on + strand, within MPMX19_04628at 2.505 kb on + strand, within MPMX19_04628at 2.505 kb on + strand, within MPMX19_04628at 2.505 kb on + strand, within MPMX19_04628at 2.505 kb on + strand, within MPMX19_04628at 2.505 kb on + strand, within MPMX19_04628at 2.506 kb on - strand, within MPMX19_04628at 2.506 kb on - strand, within MPMX19_04628at 2.506 kb on - strand, within MPMX19_04628at 2.568 kb on + strand, within MPMX19_04628at 2.601 kb on + strand, within MPMX19_04628at 2.601 kb on + strand, within MPMX19_04628at 2.602 kb on - strand, within MPMX19_04628at 2.731 kb on - strand, within MPMX19_04628at 2.731 kb on - strand, within MPMX19_04628at 2.763 kb on + strand, within MPMX19_04628at 2.763 kb on + strand, within MPMX19_04628at 2.763 kb on + strand, within MPMX19_04628at 2.764 kb on - strand, within MPMX19_04628at 2.879 kb on + strandat 2.879 kb on + strandat 2.880 kb on - strandat 2.880 kb on - strandat 2.880 kb on - strandat 2.880 kb on - strandat 2.940 kb on + strandat 2.941 kb on - strandat 2.987 kb on + strandat 3.064 kb on + strandat 3.065 kb on - strandat 3.422 kb on + strand, within MPMX19_04629at 3.422 kb on + strand, within MPMX19_04629at 3.422 kb on + strand, within MPMX19_04629at 3.422 kb on + strand, within MPMX19_04629at 3.422 kb on + strand, within MPMX19_04629at 3.422 kb on + strand, within MPMX19_04629at 3.422 kb on + strand, within MPMX19_04629at 3.422 kb on + strand, within MPMX19_04629at 3.423 kb on - strand, within MPMX19_04629at 3.461 kb on + strand, within MPMX19_04629at 3.461 kb on + strand, within MPMX19_04629at 3.461 kb on + strand, within MPMX19_04629at 3.462 kb on - strand, within MPMX19_04629at 4.139 kb on + strand, within MPMX19_04629at 4.139 kb on + strand, within MPMX19_04629at 4.139 kb on + strand, within MPMX19_04629at 4.139 kb on + strand, within MPMX19_04629at 4.139 kb on + strand, within MPMX19_04629at 4.139 kb on + strand, within MPMX19_04629at 4.139 kb on + strand, within MPMX19_04629at 4.139 kb on + strand, within MPMX19_04629at 4.139 kb on + strand, within MPMX19_04629at 4.139 kb on + strand, within MPMX19_04629at 4.139 kb on + strand, within MPMX19_04629at 4.139 kb on + strand, within MPMX19_04629at 4.139 kb on + strand, within MPMX19_04629at 4.139 kb on + strand, within MPMX19_04629at 4.139 kb on + strand, within MPMX19_04629at 4.140 kb on - strand, within MPMX19_04629at 4.140 kb on - strand, within MPMX19_04629at 4.140 kb on - strand, within MPMX19_04629at 4.140 kb on - strand, within MPMX19_04629at 4.140 kb on - strand, within MPMX19_04629at 4.140 kb on - strand, within MPMX19_04629at 4.193 kb on + strand, within MPMX19_04629at 4.193 kb on + strand, within MPMX19_04629at 4.193 kb on + strand, within MPMX19_04629at 4.193 kb on + strand, within MPMX19_04629at 4.193 kb on + strand, within MPMX19_04629at 4.194 kb on - strand, within MPMX19_04629at 4.194 kb on - strand, within MPMX19_04629at 4.194 kb on - strand, within MPMX19_04629at 4.194 kb on - strand, within MPMX19_04629at 4.194 kb on - strand, within MPMX19_04629at 4.202 kb on + strand, within MPMX19_04629at 4.202 kb on + strand, within MPMX19_04629at 4.202 kb on + strand, within MPMX19_04629at 4.202 kb on + strand, within MPMX19_04629at 4.202 kb on + strand, within MPMX19_04629at 4.202 kb on + strand, within MPMX19_04629at 4.202 kb on + strand, within MPMX19_04629at 4.202 kb on + strand, within MPMX19_04629at 4.202 kb on + strand, within MPMX19_04629at 4.202 kb on + strand, within MPMX19_04629at 4.202 kb on + strand, within MPMX19_04629at 4.202 kb on + strand, within MPMX19_04629at 4.202 kb on + strand, within MPMX19_04629at 4.202 kb on + strand, within MPMX19_04629at 4.203 kb on - strand, within MPMX19_04629at 4.203 kb on - strand, within MPMX19_04629at 4.203 kb on - strand, within MPMX19_04629at 4.203 kb on - strand, within MPMX19_04629at 4.203 kb on - strand, within MPMX19_04629at 4.203 kb on - strand, within MPMX19_04629at 4.203 kb on - strand, within MPMX19_04629at 4.203 kb on - strand, within MPMX19_04629at 4.280 kb on + strand, within MPMX19_04629at 4.571 kb on + strand, within MPMX19_04629at 4.571 kb on + strand, within MPMX19_04629at 4.571 kb on + strand, within MPMX19_04629at 4.572 kb on - strand, within MPMX19_04629at 4.572 kb on - strand, within MPMX19_04629at 4.572 kb on - strand, within MPMX19_04629at 4.580 kb on + strand, within MPMX19_04629at 4.580 kb on + strand, within MPMX19_04629at 4.580 kb on + strand, within MPMX19_04629at 4.580 kb on + strand, within MPMX19_04629at 4.580 kb on + strand, within MPMX19_04629at 4.584 kb on - strand, within MPMX19_04629at 4.584 kb on - strand, within MPMX19_04629at 4.584 kb on - strand, within MPMX19_04629at 4.930 kb on + strandat 4.930 kb on + strandat 4.930 kb on + strandat 4.930 kb on + strandat 4.930 kb on + strandat 4.931 kb on - strandat 4.931 kb on - strandat 4.931 kb on - strandat 4.931 kb on - strandat 4.931 kb on - strandat 4.931 kb on - strandat 4.933 kb on + strandat 4.933 kb on + strandat 4.933 kb on + strandat 4.934 kb on - strandat 4.934 kb on - strandat 4.934 kb on - strandat 4.934 kb on - strandat 4.934 kb on - strandat 4.934 kb on - strandat 5.161 kb on + strand, within MPMX19_04630at 5.161 kb on + strand, within MPMX19_04630at 5.161 kb on + strand, within MPMX19_04630at 5.161 kb on + strand, within MPMX19_04630at 5.161 kb on + strand, within MPMX19_04630at 5.161 kb on + strand, within MPMX19_04630at 5.162 kb on - strand, within MPMX19_04630at 5.162 kb on - strand, within MPMX19_04630at 5.162 kb on - strand, within MPMX19_04630at 5.162 kb on - strand, within MPMX19_04630at 5.162 kb on - strand, within MPMX19_04630at 5.162 kb on - strand, within MPMX19_04630at 5.162 kb on - strand, within MPMX19_04630at 5.220 kb on + strand, within MPMX19_04630at 5.368 kb on + strand, within MPMX19_04630at 5.446 kb on + strand, within MPMX19_04630at 5.446 kb on + strand, within MPMX19_04630at 5.446 kb on + strand, within MPMX19_04630at 5.446 kb on + strand, within MPMX19_04630at 5.446 kb on + strand, within MPMX19_04630at 5.446 kb on + strand, within MPMX19_04630at 5.446 kb on + strand, within MPMX19_04630at 5.446 kb on + strand, within MPMX19_04630at 5.446 kb on + strand, within MPMX19_04630at 5.446 kb on + strand, within MPMX19_04630at 5.446 kb on + strand, within MPMX19_04630at 5.446 kb on + strand, within MPMX19_04630at 5.446 kb on + strand, within MPMX19_04630at 5.446 kb on + strand, within MPMX19_04630at 5.446 kb on + strand, within MPMX19_04630at 5.446 kb on + strand, within MPMX19_04630at 5.446 kb on + strand, within MPMX19_04630at 5.446 kb on + strand, within MPMX19_04630at 5.447 kb on - strand, within MPMX19_04630at 5.447 kb on - strand, within MPMX19_04630at 5.447 kb on - strand, within MPMX19_04630at 5.447 kb on - strand, within MPMX19_04630at 5.447 kb on - strand, within MPMX19_04630at 5.447 kb on - strand, within MPMX19_04630at 5.447 kb on - strand, within MPMX19_04630at 5.447 kb on - strand, within MPMX19_04630at 5.447 kb on - strand, within MPMX19_04630at 5.447 kb on - strand, within MPMX19_04630at 5.447 kb on - strand, within MPMX19_04630at 5.447 kb on - strand, within MPMX19_04630at 5.572 kb on + strand, within MPMX19_04630at 5.572 kb on + strand, within MPMX19_04630at 5.573 kb on - strand, within MPMX19_04630at 5.641 kb on + strand, within MPMX19_04630at 5.641 kb on + strand, within MPMX19_04630at 5.641 kb on + strand, within MPMX19_04630at 5.641 kb on + strand, within MPMX19_04630at 5.642 kb on - strand, within MPMX19_04630at 5.642 kb on - strand, within MPMX19_04630at 5.642 kb on - strand, within MPMX19_04630at 5.642 kb on - strand, within MPMX19_04630at 5.642 kb on - strand, within MPMX19_04630at 5.642 kb on - strand, within MPMX19_04630

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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2,046 + MPMX19_04628 0.37 -0.4
2,046 + MPMX19_04628 0.37 +0.1
2,046 + MPMX19_04628 0.37 -0.6
2,047 - MPMX19_04628 0.37 +0.2
2,047 - MPMX19_04628 0.37 -1.4
2,143 + MPMX19_04628 0.44 -0.8
2,143 + MPMX19_04628 0.44 +0.6
2,143 + MPMX19_04628 0.44 +0.6
2,144 - MPMX19_04628 0.44 +0.0
2,144 - MPMX19_04628 0.44 +0.3
2,205 + MPMX19_04628 0.48 -0.6
2,206 - MPMX19_04628 0.49 -2.5
2,206 - MPMX19_04628 0.49 +1.6
2,307 + MPMX19_04628 0.56 -2.0
2,307 + MPMX19_04628 0.56 -0.3
2,307 + MPMX19_04628 0.56 -0.1
2,307 + MPMX19_04628 0.56 -0.7
2,308 - MPMX19_04628 0.56 +0.0
2,308 - MPMX19_04628 0.56 +0.8
2,308 - MPMX19_04628 0.56 -0.7
2,308 - MPMX19_04628 0.56 +0.0
2,505 + MPMX19_04628 0.70 -0.6
2,505 + MPMX19_04628 0.70 -0.4
2,505 + MPMX19_04628 0.70 +0.4
2,505 + MPMX19_04628 0.70 -2.0
2,505 + MPMX19_04628 0.70 -1.5
2,505 + MPMX19_04628 0.70 -0.6
2,505 + MPMX19_04628 0.70 -1.5
2,505 + MPMX19_04628 0.70 -1.3
2,505 + MPMX19_04628 0.70 -1.1
2,506 - MPMX19_04628 0.70 +2.3
2,506 - MPMX19_04628 0.70 +0.3
2,506 - MPMX19_04628 0.70 -0.6
2,568 + MPMX19_04628 0.75 -0.4
2,601 + MPMX19_04628 0.77 -0.7
2,601 + MPMX19_04628 0.77 +0.1
2,602 - MPMX19_04628 0.77 -0.7
2,731 - MPMX19_04628 0.86 -0.7
2,731 - MPMX19_04628 0.86 -0.7
2,763 + MPMX19_04628 0.89 +0.1
2,763 + MPMX19_04628 0.89 +0.4
2,763 + MPMX19_04628 0.89 -2.1
2,764 - MPMX19_04628 0.89 +1.2
2,879 + -1.3
2,879 + +0.3
2,880 - +0.3
2,880 - -1.3
2,880 - +0.4
2,880 - +1.2
2,940 + +0.2
2,941 - +0.0
2,987 + -1.6
3,064 + -0.7
3,065 - -1.6
3,422 + MPMX19_04629 0.25 +0.2
3,422 + MPMX19_04629 0.25 +1.9
3,422 + MPMX19_04629 0.25 +0.5
3,422 + MPMX19_04629 0.25 -1.5
3,422 + MPMX19_04629 0.25 +0.1
3,422 + MPMX19_04629 0.25 +0.3
3,422 + MPMX19_04629 0.25 -0.4
3,422 + MPMX19_04629 0.25 +0.6
3,423 - MPMX19_04629 0.25 -1.5
3,461 + MPMX19_04629 0.27 -2.1
3,461 + MPMX19_04629 0.27 -0.3
3,461 + MPMX19_04629 0.27 +0.2
3,462 - MPMX19_04629 0.27 +0.0
4,139 + MPMX19_04629 0.64 -0.1
4,139 + MPMX19_04629 0.64 -0.4
4,139 + MPMX19_04629 0.64 +1.1
4,139 + MPMX19_04629 0.64 +0.2
4,139 + MPMX19_04629 0.64 +0.4
4,139 + MPMX19_04629 0.64 -0.5
4,139 + MPMX19_04629 0.64 +0.3
4,139 + MPMX19_04629 0.64 -1.6
4,139 + MPMX19_04629 0.64 -0.7
4,139 + MPMX19_04629 0.64 +0.7
4,139 + MPMX19_04629 0.64 +0.2
4,139 + MPMX19_04629 0.64 -0.5
4,139 + MPMX19_04629 0.64 -1.9
4,139 + MPMX19_04629 0.64 +0.1
4,139 + MPMX19_04629 0.64 +0.4
4,140 - MPMX19_04629 0.64 -0.1
4,140 - MPMX19_04629 0.64 -1.1
4,140 - MPMX19_04629 0.64 -1.6
4,140 - MPMX19_04629 0.64 -0.7
4,140 - MPMX19_04629 0.64 +0.2
4,140 - MPMX19_04629 0.64 +0.3
4,193 + MPMX19_04629 0.67 -0.5
4,193 + MPMX19_04629 0.67 +0.9
4,193 + MPMX19_04629 0.67 -0.9
4,193 + MPMX19_04629 0.67 +0.2
4,193 + MPMX19_04629 0.67 -1.4
4,194 - MPMX19_04629 0.67 -1.2
4,194 - MPMX19_04629 0.67 +0.9
4,194 - MPMX19_04629 0.67 +0.2
4,194 - MPMX19_04629 0.67 +0.2
4,194 - MPMX19_04629 0.67 +0.7
4,202 + MPMX19_04629 0.67 +0.3
4,202 + MPMX19_04629 0.67 -1.2
4,202 + MPMX19_04629 0.67 -1.0
4,202 + MPMX19_04629 0.67 +0.3
4,202 + MPMX19_04629 0.67 -0.7
4,202 + MPMX19_04629 0.67 -0.4
4,202 + MPMX19_04629 0.67 -0.2
4,202 + MPMX19_04629 0.67 +0.6
4,202 + MPMX19_04629 0.67 +0.7
4,202 + MPMX19_04629 0.67 -0.9
4,202 + MPMX19_04629 0.67 -1.9
4,202 + MPMX19_04629 0.67 -0.2
4,202 + MPMX19_04629 0.67 -0.6
4,202 + MPMX19_04629 0.67 -0.5
4,203 - MPMX19_04629 0.67 -0.2
4,203 - MPMX19_04629 0.67 +0.2
4,203 - MPMX19_04629 0.67 +1.1
4,203 - MPMX19_04629 0.67 -0.2
4,203 - MPMX19_04629 0.67 +0.2
4,203 - MPMX19_04629 0.67 -0.7
4,203 - MPMX19_04629 0.67 +1.0
4,203 - MPMX19_04629 0.67 +0.0
4,280 + MPMX19_04629 0.71 +0.8
4,571 + MPMX19_04629 0.87 +0.0
4,571 + MPMX19_04629 0.87 -0.6
4,571 + MPMX19_04629 0.87 +0.5
4,572 - MPMX19_04629 0.87 -1.6
4,572 - MPMX19_04629 0.87 +1.0
4,572 - MPMX19_04629 0.87 -1.4
4,580 + MPMX19_04629 0.88 -0.2
4,580 + MPMX19_04629 0.88 -0.6
4,580 + MPMX19_04629 0.88 -2.0
4,580 + MPMX19_04629 0.88 +0.4
4,580 + MPMX19_04629 0.88 +0.1
4,584 - MPMX19_04629 0.88 +0.5
4,584 - MPMX19_04629 0.88 -1.0
4,584 - MPMX19_04629 0.88 +0.2
4,930 + -1.2
4,930 + -3.6
4,930 + +0.2
4,930 + -0.3
4,930 + +0.3
4,931 - -0.6
4,931 - -0.7
4,931 - -1.5
4,931 - +1.2
4,931 - +0.6
4,931 - -1.2
4,933 + -1.2
4,933 + -0.2
4,933 + +1.1
4,934 - -1.0
4,934 - +2.6
4,934 - -0.4
4,934 - +0.4
4,934 - -0.2
4,934 - +1.0
5,161 + MPMX19_04630 0.16 -0.7
5,161 + MPMX19_04630 0.16 -1.0
5,161 + MPMX19_04630 0.16 +0.3
5,161 + MPMX19_04630 0.16 -0.7
5,161 + MPMX19_04630 0.16 +0.5
5,161 + MPMX19_04630 0.16 +0.8
5,162 - MPMX19_04630 0.16 -0.1
5,162 - MPMX19_04630 0.16 +0.2
5,162 - MPMX19_04630 0.16 +0.0
5,162 - MPMX19_04630 0.16 +0.8
5,162 - MPMX19_04630 0.16 -0.3
5,162 - MPMX19_04630 0.16 -0.4
5,162 - MPMX19_04630 0.16 -0.9
5,220 + MPMX19_04630 0.19 -1.0
5,368 + MPMX19_04630 0.26 -1.7
5,446 + MPMX19_04630 0.29 -0.3
5,446 + MPMX19_04630 0.29 +0.6
5,446 + MPMX19_04630 0.29 -0.2
5,446 + MPMX19_04630 0.29 -0.9
5,446 + MPMX19_04630 0.29 +0.2
5,446 + MPMX19_04630 0.29 +0.2
5,446 + MPMX19_04630 0.29 -1.6
5,446 + MPMX19_04630 0.29 -0.7
5,446 + MPMX19_04630 0.29 +0.2
5,446 + MPMX19_04630 0.29 -0.1
5,446 + MPMX19_04630 0.29 -0.3
5,446 + MPMX19_04630 0.29 -1.2
5,446 + MPMX19_04630 0.29 -0.2
5,446 + MPMX19_04630 0.29 +0.1
5,446 + MPMX19_04630 0.29 +0.2
5,446 + MPMX19_04630 0.29 +1.9
5,446 + MPMX19_04630 0.29 +0.4
5,446 + MPMX19_04630 0.29 -0.9
5,447 - MPMX19_04630 0.29 -0.7
5,447 - MPMX19_04630 0.29 -0.4
5,447 - MPMX19_04630 0.29 -0.3
5,447 - MPMX19_04630 0.29 -0.9
5,447 - MPMX19_04630 0.29 -1.0
5,447 - MPMX19_04630 0.29 +1.0
5,447 - MPMX19_04630 0.29 +0.0
5,447 - MPMX19_04630 0.29 -0.2
5,447 - MPMX19_04630 0.29 +0.0
5,447 - MPMX19_04630 0.29 +0.6
5,447 - MPMX19_04630 0.29 -0.7
5,447 - MPMX19_04630 0.29 -1.9
5,572 + MPMX19_04630 0.35 +0.0
5,572 + MPMX19_04630 0.35 -1.1
5,573 - MPMX19_04630 0.35 -1.7
5,641 + MPMX19_04630 0.38 -2.4
5,641 + MPMX19_04630 0.38 -0.5
5,641 + MPMX19_04630 0.38 -0.5
5,641 + MPMX19_04630 0.38 -1.1
5,642 - MPMX19_04630 0.38 +0.7
5,642 - MPMX19_04630 0.38 +0.6
5,642 - MPMX19_04630 0.38 +0.9
5,642 - MPMX19_04630 0.38 +0.0
5,642 - MPMX19_04630 0.38 +0.3
5,642 - MPMX19_04630 0.38 -0.9

Or see this region's nucleotide sequence