Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04598 and MPMX19_04599 overlap by 4 nucleotides MPMX19_04599 and MPMX19_04600 are separated by 116 nucleotides
MPMX19_04598: MPMX19_04598 - putative ABC transporter ATP-binding protein YadG, at 982,744 to 983,670
_04598
MPMX19_04599: MPMX19_04599 - Inner membrane transport permease YadH, at 983,667 to 984,428
_04599
MPMX19_04600: MPMX19_04600 - hypothetical protein, at 984,545 to 984,994
_04600
Position (kb) 983
984
985 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 982.683 kb on + strand at 982.684 kb on - strand at 982.743 kb on + strand at 982.743 kb on + strand at 982.743 kb on + strand at 982.743 kb on + strand at 982.743 kb on + strand at 982.743 kb on + strand at 982.744 kb on - strand at 982.752 kb on + strand at 982.752 kb on + strand at 982.752 kb on + strand at 982.755 kb on - strand at 982.783 kb on + strand at 982.783 kb on + strand at 982.783 kb on + strand at 982.783 kb on + strand at 982.783 kb on + strand at 982.783 kb on + strand at 982.783 kb on + strand at 982.783 kb on + strand at 982.783 kb on + strand at 982.783 kb on + strand at 982.783 kb on + strand at 982.784 kb on - strand at 982.784 kb on - strand at 982.784 kb on - strand at 982.784 kb on - strand at 982.784 kb on - strand at 982.784 kb on - strand at 982.784 kb on - strand at 982.784 kb on - strand at 982.784 kb on - strand at 982.784 kb on - strand at 982.784 kb on - strand at 982.784 kb on - strand at 982.784 kb on - strand at 982.784 kb on - strand at 982.784 kb on - strand at 982.784 kb on - strand at 982.784 kb on - strand at 982.784 kb on - strand at 982.784 kb on - strand at 982.784 kb on - strand at 983.320 kb on + strand, within MPMX19_04598 at 983.320 kb on + strand, within MPMX19_04598 at 983.320 kb on + strand, within MPMX19_04598 at 983.320 kb on + strand, within MPMX19_04598 at 983.320 kb on + strand, within MPMX19_04598 at 983.320 kb on + strand, within MPMX19_04598 at 983.320 kb on + strand, within MPMX19_04598 at 983.321 kb on - strand, within MPMX19_04598 at 983.321 kb on - strand, within MPMX19_04598 at 983.321 kb on - strand, within MPMX19_04598 at 983.321 kb on - strand, within MPMX19_04598 at 983.321 kb on - strand, within MPMX19_04598 at 983.321 kb on - strand, within MPMX19_04598 at 983.321 kb on - strand, within MPMX19_04598 at 983.321 kb on - strand, within MPMX19_04598 at 983.321 kb on - strand, within MPMX19_04598 at 983.321 kb on - strand, within MPMX19_04598 at 983.321 kb on - strand, within MPMX19_04598 at 983.321 kb on - strand, within MPMX19_04598 at 983.321 kb on - strand, within MPMX19_04598 at 983.321 kb on - strand, within MPMX19_04598 at 983.321 kb on - strand, within MPMX19_04598 at 983.321 kb on - strand, within MPMX19_04598 at 983.321 kb on - strand, within MPMX19_04598 at 983.321 kb on - strand, within MPMX19_04598 at 983.321 kb on - strand, within MPMX19_04598 at 983.322 kb on + strand, within MPMX19_04598 at 983.322 kb on + strand, within MPMX19_04598 at 983.322 kb on + strand, within MPMX19_04598 at 983.322 kb on + strand, within MPMX19_04598 at 983.322 kb on + strand, within MPMX19_04598 at 983.322 kb on + strand, within MPMX19_04598 at 983.323 kb on - strand, within MPMX19_04598 at 983.323 kb on - strand, within MPMX19_04598 at 983.323 kb on - strand, within MPMX19_04598 at 983.323 kb on - strand, within MPMX19_04598 at 983.323 kb on - strand, within MPMX19_04598 at 983.524 kb on + strand, within MPMX19_04598 at 983.524 kb on + strand, within MPMX19_04598 at 983.524 kb on + strand, within MPMX19_04598 at 983.524 kb on + strand, within MPMX19_04598 at 983.524 kb on + strand, within MPMX19_04598 at 983.524 kb on + strand, within MPMX19_04598 at 983.525 kb on - strand, within MPMX19_04598 at 983.525 kb on - strand, within MPMX19_04598 at 983.525 kb on - strand, within MPMX19_04598 at 983.599 kb on + strand at 983.599 kb on + strand at 983.599 kb on + strand at 983.600 kb on - strand at 983.600 kb on - strand at 983.694 kb on + strand at 983.694 kb on + strand at 983.694 kb on + strand at 983.694 kb on + strand at 983.694 kb on + strand at 983.694 kb on + strand at 983.694 kb on + strand at 983.694 kb on + strand at 983.694 kb on + strand at 983.694 kb on + strand at 983.694 kb on + strand at 983.694 kb on + strand at 983.694 kb on + strand at 983.694 kb on + strand at 983.694 kb on + strand at 983.694 kb on + strand at 983.694 kb on + strand at 983.694 kb on + strand at 983.694 kb on + strand at 983.694 kb on + strand at 983.695 kb on - strand at 983.695 kb on - strand at 983.695 kb on - strand at 983.695 kb on - strand at 983.695 kb on - strand at 983.695 kb on - strand at 983.695 kb on - strand at 983.769 kb on + strand, within MPMX19_04599 at 983.769 kb on + strand, within MPMX19_04599 at 983.769 kb on + strand, within MPMX19_04599 at 983.770 kb on - strand, within MPMX19_04599 at 983.770 kb on - strand, within MPMX19_04599 at 983.770 kb on - strand, within MPMX19_04599 at 983.770 kb on - strand, within MPMX19_04599 at 983.829 kb on + strand, within MPMX19_04599 at 983.829 kb on + strand, within MPMX19_04599 at 983.829 kb on + strand, within MPMX19_04599 at 983.830 kb on - strand, within MPMX19_04599 at 983.884 kb on + strand, within MPMX19_04599 at 983.884 kb on + strand, within MPMX19_04599 at 983.884 kb on + strand, within MPMX19_04599 at 983.907 kb on + strand, within MPMX19_04599 at 983.907 kb on + strand, within MPMX19_04599 at 983.907 kb on + strand, within MPMX19_04599 at 983.907 kb on + strand, within MPMX19_04599 at 983.907 kb on + strand, within MPMX19_04599 at 983.907 kb on + strand, within MPMX19_04599 at 983.907 kb on + strand, within MPMX19_04599 at 983.907 kb on + strand, within MPMX19_04599 at 983.907 kb on + strand, within MPMX19_04599 at 983.907 kb on + strand, within MPMX19_04599 at 983.907 kb on + strand, within MPMX19_04599 at 983.907 kb on + strand, within MPMX19_04599 at 983.907 kb on + strand, within MPMX19_04599 at 983.908 kb on - strand, within MPMX19_04599 at 983.908 kb on - strand, within MPMX19_04599 at 983.908 kb on - strand, within MPMX19_04599 at 983.908 kb on - strand, within MPMX19_04599 at 983.908 kb on - strand, within MPMX19_04599 at 983.908 kb on - strand, within MPMX19_04599 at 983.920 kb on - strand, within MPMX19_04599 at 983.920 kb on - strand, within MPMX19_04599 at 983.920 kb on - strand, within MPMX19_04599 at 983.934 kb on + strand, within MPMX19_04599 at 983.934 kb on + strand, within MPMX19_04599 at 983.934 kb on + strand, within MPMX19_04599 at 983.934 kb on + strand, within MPMX19_04599 at 983.934 kb on + strand, within MPMX19_04599 at 983.935 kb on - strand, within MPMX19_04599 at 983.935 kb on - strand, within MPMX19_04599 at 983.935 kb on - strand, within MPMX19_04599 at 983.935 kb on - strand, within MPMX19_04599 at 983.935 kb on - strand, within MPMX19_04599 at 983.935 kb on - strand, within MPMX19_04599 at 983.935 kb on - strand, within MPMX19_04599 at 983.982 kb on + strand, within MPMX19_04599 at 983.983 kb on - strand, within MPMX19_04599 at 984.222 kb on + strand, within MPMX19_04599 at 984.223 kb on - strand, within MPMX19_04599 at 984.223 kb on - strand, within MPMX19_04599 at 984.223 kb on - strand, within MPMX19_04599 at 984.223 kb on - strand, within MPMX19_04599 at 984.282 kb on + strand, within MPMX19_04599 at 984.282 kb on + strand, within MPMX19_04599 at 984.282 kb on + strand, within MPMX19_04599 at 984.282 kb on + strand, within MPMX19_04599 at 984.282 kb on + strand, within MPMX19_04599 at 984.282 kb on + strand, within MPMX19_04599 at 984.283 kb on - strand, within MPMX19_04599 at 984.313 kb on - strand, within MPMX19_04599 at 984.313 kb on - strand, within MPMX19_04599 at 984.412 kb on - strand at 984.534 kb on + strand at 984.534 kb on + strand at 984.534 kb on + strand at 984.534 kb on + strand at 984.534 kb on + strand at 984.535 kb on - strand at 984.535 kb on - strand at 985.263 kb on + strand at 985.263 kb on + strand at 985.263 kb on + strand at 985.263 kb on + strand at 985.263 kb on + strand at 985.264 kb on - strand at 985.264 kb on - strand at 985.264 kb on - strand at 985.264 kb on - strand at 985.264 kb on - strand at 985.264 kb on - strand at 985.264 kb on - strand at 985.264 kb on - strand at 985.264 kb on - strand at 985.264 kb on - strand at 985.274 kb on + strand at 985.275 kb on - strand at 985.275 kb on - strand at 985.275 kb on - strand at 985.275 kb on - strand at 985.276 kb on + strand at 985.277 kb on - strand at 985.400 kb on + strand at 985.400 kb on + strand at 985.400 kb on + strand at 985.400 kb on + strand at 985.400 kb on + strand at 985.400 kb on + strand at 985.400 kb on + strand at 985.400 kb on + strand at 985.400 kb on + strand at 985.401 kb on - strand at 985.401 kb on - strand at 985.401 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 982,683 + -0.9 982,684 - -0.3 982,743 + -0.4 982,743 + -0.3 982,743 + -0.6 982,743 + -0.5 982,743 + -0.7 982,743 + +0.7 982,744 - -0.6 982,752 + -0.4 982,752 + -0.1 982,752 + -0.2 982,755 - -0.8 982,783 + -1.7 982,783 + +0.2 982,783 + -2.1 982,783 + +0.3 982,783 + -0.1 982,783 + +1.0 982,783 + -1.1 982,783 + +0.3 982,783 + +0.9 982,783 + +0.2 982,783 + +0.0 982,784 - -0.5 982,784 - -0.2 982,784 - -1.2 982,784 - -2.7 982,784 - -0.4 982,784 - -0.7 982,784 - +0.7 982,784 - -1.0 982,784 - -1.0 982,784 - -0.7 982,784 - -0.1 982,784 - -1.3 982,784 - -0.3 982,784 - -0.8 982,784 - -0.4 982,784 - -1.1 982,784 - -0.2 982,784 - -0.8 982,784 - -1.8 982,784 - +0.8 983,320 + MPMX19_04598 0.62 -0.6 983,320 + MPMX19_04598 0.62 -0.2 983,320 + MPMX19_04598 0.62 -0.8 983,320 + MPMX19_04598 0.62 -1.0 983,320 + MPMX19_04598 0.62 -0.7 983,320 + MPMX19_04598 0.62 -1.7 983,320 + MPMX19_04598 0.62 +0.4 983,321 - MPMX19_04598 0.62 +0.7 983,321 - MPMX19_04598 0.62 +0.5 983,321 - MPMX19_04598 0.62 -2.1 983,321 - MPMX19_04598 0.62 -0.7 983,321 - MPMX19_04598 0.62 -1.3 983,321 - MPMX19_04598 0.62 -0.1 983,321 - MPMX19_04598 0.62 -0.9 983,321 - MPMX19_04598 0.62 +0.2 983,321 - MPMX19_04598 0.62 -1.1 983,321 - MPMX19_04598 0.62 +0.5 983,321 - MPMX19_04598 0.62 +0.2 983,321 - MPMX19_04598 0.62 -0.3 983,321 - MPMX19_04598 0.62 -0.4 983,321 - MPMX19_04598 0.62 -0.4 983,321 - MPMX19_04598 0.62 -0.8 983,321 - MPMX19_04598 0.62 +0.1 983,321 - MPMX19_04598 0.62 -0.1 983,321 - MPMX19_04598 0.62 -0.2 983,321 - MPMX19_04598 0.62 +1.0 983,322 + MPMX19_04598 0.62 -0.2 983,322 + MPMX19_04598 0.62 -2.5 983,322 + MPMX19_04598 0.62 -0.8 983,322 + MPMX19_04598 0.62 -1.2 983,322 + MPMX19_04598 0.62 -2.2 983,322 + MPMX19_04598 0.62 -1.6 983,323 - MPMX19_04598 0.62 +0.8 983,323 - MPMX19_04598 0.62 -1.6 983,323 - MPMX19_04598 0.62 -0.4 983,323 - MPMX19_04598 0.62 -0.7 983,323 - MPMX19_04598 0.62 +0.0 983,524 + MPMX19_04598 0.84 -3.0 983,524 + MPMX19_04598 0.84 +0.6 983,524 + MPMX19_04598 0.84 -0.7 983,524 + MPMX19_04598 0.84 +0.2 983,524 + MPMX19_04598 0.84 -0.7 983,524 + MPMX19_04598 0.84 +0.2 983,525 - MPMX19_04598 0.84 +0.3 983,525 - MPMX19_04598 0.84 +0.1 983,525 - MPMX19_04598 0.84 +0.3 983,599 + -0.4 983,599 + -2.0 983,599 + +0.2 983,600 - +0.4 983,600 - -0.6 983,694 + +0.6 983,694 + -1.1 983,694 + -0.5 983,694 + +0.1 983,694 + -0.8 983,694 + +0.6 983,694 + -0.5 983,694 + -0.4 983,694 + -1.0 983,694 + -1.3 983,694 + -1.1 983,694 + -0.3 983,694 + -1.1 983,694 + -0.8 983,694 + -0.4 983,694 + +0.5 983,694 + +0.0 983,694 + -0.3 983,694 + -1.4 983,694 + -1.7 983,695 - +0.2 983,695 - -0.0 983,695 - -1.4 983,695 - +1.9 983,695 - -0.6 983,695 - +0.7 983,695 - -0.4 983,769 + MPMX19_04599 0.13 -1.2 983,769 + MPMX19_04599 0.13 +1.4 983,769 + MPMX19_04599 0.13 -0.5 983,770 - MPMX19_04599 0.14 +1.0 983,770 - MPMX19_04599 0.14 +1.4 983,770 - MPMX19_04599 0.14 +0.0 983,770 - MPMX19_04599 0.14 +0.2 983,829 + MPMX19_04599 0.21 -1.0 983,829 + MPMX19_04599 0.21 -0.3 983,829 + MPMX19_04599 0.21 +0.5 983,830 - MPMX19_04599 0.21 -0.4 983,884 + MPMX19_04599 0.28 +1.3 983,884 + MPMX19_04599 0.28 +2.1 983,884 + MPMX19_04599 0.28 +1.3 983,907 + MPMX19_04599 0.31 +0.9 983,907 + MPMX19_04599 0.31 +0.3 983,907 + MPMX19_04599 0.31 +0.5 983,907 + MPMX19_04599 0.31 -0.6 983,907 + MPMX19_04599 0.31 +1.4 983,907 + MPMX19_04599 0.31 +1.2 983,907 + MPMX19_04599 0.31 -0.1 983,907 + MPMX19_04599 0.31 +0.5 983,907 + MPMX19_04599 0.31 +0.2 983,907 + MPMX19_04599 0.31 +0.2 983,907 + MPMX19_04599 0.31 -1.4 983,907 + MPMX19_04599 0.31 -0.7 983,907 + MPMX19_04599 0.31 -0.2 983,908 - MPMX19_04599 0.32 -0.1 983,908 - MPMX19_04599 0.32 -0.9 983,908 - MPMX19_04599 0.32 -0.4 983,908 - MPMX19_04599 0.32 -0.0 983,908 - MPMX19_04599 0.32 -0.3 983,908 - MPMX19_04599 0.32 -0.8 983,920 - MPMX19_04599 0.33 -0.4 983,920 - MPMX19_04599 0.33 +0.4 983,920 - MPMX19_04599 0.33 -0.1 983,934 + MPMX19_04599 0.35 +0.7 983,934 + MPMX19_04599 0.35 -0.1 983,934 + MPMX19_04599 0.35 +0.4 983,934 + MPMX19_04599 0.35 -0.4 983,934 + MPMX19_04599 0.35 -0.3 983,935 - MPMX19_04599 0.35 -0.1 983,935 - MPMX19_04599 0.35 -1.3 983,935 - MPMX19_04599 0.35 -0.6 983,935 - MPMX19_04599 0.35 -0.3 983,935 - MPMX19_04599 0.35 -0.4 983,935 - MPMX19_04599 0.35 -0.8 983,935 - MPMX19_04599 0.35 +0.2 983,982 + MPMX19_04599 0.41 +1.7 983,983 - MPMX19_04599 0.41 +1.1 984,222 + MPMX19_04599 0.73 -0.7 984,223 - MPMX19_04599 0.73 -1.0 984,223 - MPMX19_04599 0.73 +0.7 984,223 - MPMX19_04599 0.73 +0.2 984,223 - MPMX19_04599 0.73 -1.4 984,282 + MPMX19_04599 0.81 +0.2 984,282 + MPMX19_04599 0.81 +0.7 984,282 + MPMX19_04599 0.81 +0.6 984,282 + MPMX19_04599 0.81 -0.3 984,282 + MPMX19_04599 0.81 +0.9 984,282 + MPMX19_04599 0.81 -0.3 984,283 - MPMX19_04599 0.81 +0.5 984,313 - MPMX19_04599 0.85 +2.5 984,313 - MPMX19_04599 0.85 -1.6 984,412 - -1.6 984,534 + -0.3 984,534 + -0.6 984,534 + +1.3 984,534 + -0.3 984,534 + -0.7 984,535 - -0.3 984,535 - -1.0 985,263 + -1.6 985,263 + -0.3 985,263 + -0.3 985,263 + -1.4 985,263 + -0.8 985,264 - +0.4 985,264 - +0.2 985,264 - +1.0 985,264 - -1.4 985,264 - +0.2 985,264 - -0.1 985,264 - +1.3 985,264 - -1.0 985,264 - -1.4 985,264 - -1.0 985,274 + +0.2 985,275 - -0.4 985,275 - -0.6 985,275 - -0.3 985,275 - +0.5 985,276 + -0.4 985,277 - +0.7 985,400 + -0.8 985,400 + -0.0 985,400 + -0.4 985,400 + -0.6 985,400 + -1.5 985,400 + +0.5 985,400 + -0.7 985,400 + +1.2 985,400 + -0.3 985,401 - +0.3 985,401 - +0.2 985,401 - -0.4
Or see this region's nucleotide sequence