Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04596

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04595 and MPMX19_04596 are separated by 137 nucleotidesMPMX19_04596 and MPMX19_04597 overlap by 4 nucleotides MPMX19_04595: MPMX19_04595 - Inner membrane protein CreD, at 978,814 to 980,190 _04595 MPMX19_04596: MPMX19_04596 - Alkaline phosphatase synthesis transcriptional regulatory protein PhoP, at 980,328 to 981,020 _04596 MPMX19_04597: MPMX19_04597 - Adaptive-response sensory-kinase SasA, at 981,017 to 982,657 _04597 Position (kb) 980 981 982Strain fitness (log2 ratio) -2 -1 0 1at 979.346 kb on + strand, within MPMX19_04595at 979.346 kb on + strand, within MPMX19_04595at 979.811 kb on + strand, within MPMX19_04595at 979.812 kb on - strand, within MPMX19_04595at 979.898 kb on + strand, within MPMX19_04595at 979.928 kb on + strand, within MPMX19_04595at 979.928 kb on + strand, within MPMX19_04595at 979.928 kb on + strand, within MPMX19_04595at 979.929 kb on - strand, within MPMX19_04595at 979.929 kb on - strand, within MPMX19_04595at 980.010 kb on + strand, within MPMX19_04595at 980.140 kb on + strandat 980.140 kb on + strandat 980.141 kb on - strandat 980.141 kb on - strandat 980.313 kb on + strandat 980.313 kb on + strandat 980.314 kb on - strandat 980.314 kb on - strandat 980.619 kb on + strand, within MPMX19_04596at 980.619 kb on + strand, within MPMX19_04596at 980.619 kb on + strand, within MPMX19_04596at 980.620 kb on - strand, within MPMX19_04596at 980.620 kb on - strand, within MPMX19_04596at 980.883 kb on + strand, within MPMX19_04596at 980.883 kb on + strand, within MPMX19_04596at 980.884 kb on - strand, within MPMX19_04596at 980.884 kb on - strand, within MPMX19_04596at 980.898 kb on + strand, within MPMX19_04596at 980.898 kb on + strand, within MPMX19_04596at 980.898 kb on + strand, within MPMX19_04596at 980.898 kb on + strand, within MPMX19_04596at 980.898 kb on + strand, within MPMX19_04596at 980.898 kb on + strand, within MPMX19_04596at 980.899 kb on - strand, within MPMX19_04596at 980.899 kb on - strand, within MPMX19_04596at 980.899 kb on - strand, within MPMX19_04596at 980.899 kb on - strand, within MPMX19_04596at 980.899 kb on - strand, within MPMX19_04596at 980.899 kb on - strand, within MPMX19_04596at 980.997 kb on + strandat 980.997 kb on + strandat 980.998 kb on - strandat 980.998 kb on - strandat 981.206 kb on + strand, within MPMX19_04597at 981.206 kb on + strand, within MPMX19_04597at 981.207 kb on - strand, within MPMX19_04597at 981.207 kb on - strand, within MPMX19_04597at 981.207 kb on - strand, within MPMX19_04597at 981.207 kb on - strand, within MPMX19_04597at 981.770 kb on + strand, within MPMX19_04597at 981.771 kb on - strand, within MPMX19_04597at 981.771 kb on - strand, within MPMX19_04597at 982.013 kb on + strand, within MPMX19_04597at 982.014 kb on - strand, within MPMX19_04597at 982.014 kb on - strand, within MPMX19_04597at 982.014 kb on - strand, within MPMX19_04597at 982.014 kb on - strand, within MPMX19_04597at 982.014 kb on - strand, within MPMX19_04597at 982.014 kb on - strand, within MPMX19_04597at 982.014 kb on - strand, within MPMX19_04597at 982.014 kb on - strand, within MPMX19_04597

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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979,346 + MPMX19_04595 0.39 -1.2
979,346 + MPMX19_04595 0.39 -0.6
979,811 + MPMX19_04595 0.72 -0.3
979,812 - MPMX19_04595 0.72 -1.8
979,898 + MPMX19_04595 0.79 -0.5
979,928 + MPMX19_04595 0.81 +0.0
979,928 + MPMX19_04595 0.81 -0.8
979,928 + MPMX19_04595 0.81 -0.5
979,929 - MPMX19_04595 0.81 -1.0
979,929 - MPMX19_04595 0.81 +1.1
980,010 + MPMX19_04595 0.87 -1.7
980,140 + -2.3
980,140 + +0.2
980,141 - -0.1
980,141 - -0.6
980,313 + -0.1
980,313 + +0.4
980,314 - -1.6
980,314 - +0.9
980,619 + MPMX19_04596 0.42 -1.7
980,619 + MPMX19_04596 0.42 -0.3
980,619 + MPMX19_04596 0.42 +0.2
980,620 - MPMX19_04596 0.42 +0.7
980,620 - MPMX19_04596 0.42 +0.5
980,883 + MPMX19_04596 0.80 -0.2
980,883 + MPMX19_04596 0.80 -0.7
980,884 - MPMX19_04596 0.80 +0.0
980,884 - MPMX19_04596 0.80 +0.7
980,898 + MPMX19_04596 0.82 +0.1
980,898 + MPMX19_04596 0.82 -0.8
980,898 + MPMX19_04596 0.82 +0.7
980,898 + MPMX19_04596 0.82 -1.1
980,898 + MPMX19_04596 0.82 -1.5
980,898 + MPMX19_04596 0.82 -0.6
980,899 - MPMX19_04596 0.82 -1.1
980,899 - MPMX19_04596 0.82 -0.1
980,899 - MPMX19_04596 0.82 -0.5
980,899 - MPMX19_04596 0.82 -0.2
980,899 - MPMX19_04596 0.82 +0.2
980,899 - MPMX19_04596 0.82 -0.0
980,997 + +0.5
980,997 + -0.4
980,998 - +0.1
980,998 - +0.0
981,206 + MPMX19_04597 0.12 -1.6
981,206 + MPMX19_04597 0.12 +0.6
981,207 - MPMX19_04597 0.12 -0.8
981,207 - MPMX19_04597 0.12 -0.0
981,207 - MPMX19_04597 0.12 +1.0
981,207 - MPMX19_04597 0.12 -1.3
981,770 + MPMX19_04597 0.46 +0.6
981,771 - MPMX19_04597 0.46 -0.5
981,771 - MPMX19_04597 0.46 -1.0
982,013 + MPMX19_04597 0.61 -1.3
982,014 - MPMX19_04597 0.61 +0.4
982,014 - MPMX19_04597 0.61 +0.2
982,014 - MPMX19_04597 0.61 +0.2
982,014 - MPMX19_04597 0.61 -1.0
982,014 - MPMX19_04597 0.61 +0.8
982,014 - MPMX19_04597 0.61 -0.8
982,014 - MPMX19_04597 0.61 -0.4
982,014 - MPMX19_04597 0.61 +0.6

Or see this region's nucleotide sequence