Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04575

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04574 and MPMX19_04575 are separated by 153 nucleotidesMPMX19_04575 and MPMX19_04576 are separated by 34 nucleotidesMPMX19_04576 and MPMX19_04577 overlap by 4 nucleotides MPMX19_04574: MPMX19_04574 - hypothetical protein, at 951,838 to 953,844 _04574 MPMX19_04575: MPMX19_04575 - Cystathionine gamma-synthase, at 953,998 to 955,122 _04575 MPMX19_04576: MPMX19_04576 - hypothetical protein, at 955,157 to 955,873 _04576 MPMX19_04577: MPMX19_04577 - putative glycosyltransferase, at 955,870 to 956,649 _04577 Position (kb) 953 954 955 956Strain fitness (log2 ratio) -2 -1 0 1 2at 953.035 kb on + strand, within MPMX19_04574at 953.036 kb on - strand, within MPMX19_04574at 953.075 kb on - strand, within MPMX19_04574at 953.075 kb on - strand, within MPMX19_04574at 953.774 kb on - strandat 953.813 kb on - strandat 953.813 kb on - strandat 953.813 kb on - strandat 953.813 kb on - strandat 953.813 kb on - strandat 953.813 kb on - strandat 953.813 kb on - strandat 953.813 kb on - strandat 953.877 kb on - strandat 953.900 kb on - strandat 954.085 kb on + strandat 954.085 kb on + strandat 954.085 kb on + strandat 954.085 kb on + strandat 954.085 kb on + strandat 954.085 kb on + strandat 954.085 kb on + strandat 954.085 kb on + strandat 954.085 kb on + strandat 954.086 kb on - strandat 954.086 kb on - strandat 954.086 kb on - strandat 954.127 kb on + strand, within MPMX19_04575at 954.127 kb on + strand, within MPMX19_04575at 954.128 kb on - strand, within MPMX19_04575at 954.128 kb on - strand, within MPMX19_04575at 954.286 kb on + strand, within MPMX19_04575at 954.286 kb on + strand, within MPMX19_04575at 954.286 kb on + strand, within MPMX19_04575at 954.286 kb on + strand, within MPMX19_04575at 954.286 kb on + strand, within MPMX19_04575at 954.286 kb on + strand, within MPMX19_04575at 954.286 kb on + strand, within MPMX19_04575at 954.286 kb on + strand, within MPMX19_04575at 954.286 kb on + strand, within MPMX19_04575at 954.286 kb on + strand, within MPMX19_04575at 954.286 kb on + strand, within MPMX19_04575at 954.286 kb on + strand, within MPMX19_04575at 954.286 kb on + strand, within MPMX19_04575at 954.286 kb on + strand, within MPMX19_04575at 954.287 kb on - strand, within MPMX19_04575at 954.287 kb on - strand, within MPMX19_04575at 954.287 kb on - strand, within MPMX19_04575at 954.287 kb on - strand, within MPMX19_04575at 954.287 kb on - strand, within MPMX19_04575at 954.287 kb on - strand, within MPMX19_04575at 954.287 kb on - strand, within MPMX19_04575at 954.287 kb on - strand, within MPMX19_04575at 954.287 kb on - strand, within MPMX19_04575at 954.287 kb on - strand, within MPMX19_04575at 954.287 kb on - strand, within MPMX19_04575at 954.287 kb on - strand, within MPMX19_04575at 954.287 kb on - strand, within MPMX19_04575at 954.287 kb on - strand, within MPMX19_04575at 954.287 kb on - strand, within MPMX19_04575at 954.287 kb on - strand, within MPMX19_04575at 954.287 kb on - strand, within MPMX19_04575at 954.287 kb on - strand, within MPMX19_04575at 954.287 kb on - strand, within MPMX19_04575at 954.326 kb on - strand, within MPMX19_04575at 954.580 kb on + strand, within MPMX19_04575at 954.580 kb on + strand, within MPMX19_04575at 954.581 kb on - strand, within MPMX19_04575at 954.581 kb on - strand, within MPMX19_04575at 954.818 kb on - strand, within MPMX19_04575at 954.818 kb on - strand, within MPMX19_04575at 955.167 kb on + strandat 955.167 kb on + strandat 955.168 kb on - strandat 955.337 kb on + strand, within MPMX19_04576at 955.337 kb on + strand, within MPMX19_04576at 955.337 kb on + strand, within MPMX19_04576at 955.337 kb on + strand, within MPMX19_04576at 955.337 kb on + strand, within MPMX19_04576at 955.337 kb on + strand, within MPMX19_04576at 955.337 kb on + strand, within MPMX19_04576at 955.337 kb on + strand, within MPMX19_04576at 955.337 kb on + strand, within MPMX19_04576at 955.337 kb on + strand, within MPMX19_04576at 955.338 kb on - strand, within MPMX19_04576at 955.338 kb on - strand, within MPMX19_04576at 955.338 kb on - strand, within MPMX19_04576at 955.338 kb on - strand, within MPMX19_04576at 955.338 kb on - strand, within MPMX19_04576at 955.338 kb on - strand, within MPMX19_04576at 955.338 kb on - strand, within MPMX19_04576at 955.338 kb on - strand, within MPMX19_04576at 955.590 kb on - strand, within MPMX19_04576at 955.590 kb on - strand, within MPMX19_04576at 955.661 kb on + strand, within MPMX19_04576at 955.661 kb on + strand, within MPMX19_04576at 955.724 kb on + strand, within MPMX19_04576at 955.724 kb on + strand, within MPMX19_04576at 955.724 kb on + strand, within MPMX19_04576at 955.724 kb on + strand, within MPMX19_04576at 955.725 kb on - strand, within MPMX19_04576at 955.725 kb on - strand, within MPMX19_04576at 955.725 kb on - strand, within MPMX19_04576at 955.748 kb on + strand, within MPMX19_04576at 955.748 kb on + strand, within MPMX19_04576at 955.748 kb on + strand, within MPMX19_04576at 955.749 kb on - strand, within MPMX19_04576at 955.749 kb on - strand, within MPMX19_04576at 955.749 kb on - strand, within MPMX19_04576at 955.749 kb on - strand, within MPMX19_04576

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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953,035 + MPMX19_04574 0.60 -0.1
953,036 - MPMX19_04574 0.60 +0.7
953,075 - MPMX19_04574 0.62 -1.7
953,075 - MPMX19_04574 0.62 +0.3
953,774 - +0.4
953,813 - +0.4
953,813 - -0.6
953,813 - -1.0
953,813 - +0.1
953,813 - +0.0
953,813 - +0.3
953,813 - -0.6
953,813 - -0.2
953,877 - +0.2
953,900 - +1.3
954,085 + -0.0
954,085 + -1.1
954,085 + +0.9
954,085 + -0.8
954,085 + -0.3
954,085 + -1.9
954,085 + +0.2
954,085 + -0.3
954,085 + +0.6
954,086 - +0.5
954,086 - -1.2
954,086 - +0.2
954,127 + MPMX19_04575 0.11 +0.4
954,127 + MPMX19_04575 0.11 -0.3
954,128 - MPMX19_04575 0.12 -1.4
954,128 - MPMX19_04575 0.12 +0.8
954,286 + MPMX19_04575 0.26 +0.6
954,286 + MPMX19_04575 0.26 +0.2
954,286 + MPMX19_04575 0.26 -0.8
954,286 + MPMX19_04575 0.26 +1.7
954,286 + MPMX19_04575 0.26 -0.1
954,286 + MPMX19_04575 0.26 +0.2
954,286 + MPMX19_04575 0.26 -0.6
954,286 + MPMX19_04575 0.26 -1.6
954,286 + MPMX19_04575 0.26 -1.1
954,286 + MPMX19_04575 0.26 +0.2
954,286 + MPMX19_04575 0.26 -0.2
954,286 + MPMX19_04575 0.26 -0.4
954,286 + MPMX19_04575 0.26 -0.8
954,286 + MPMX19_04575 0.26 -0.6
954,287 - MPMX19_04575 0.26 +0.0
954,287 - MPMX19_04575 0.26 -0.3
954,287 - MPMX19_04575 0.26 -0.8
954,287 - MPMX19_04575 0.26 -0.5
954,287 - MPMX19_04575 0.26 -0.7
954,287 - MPMX19_04575 0.26 -0.4
954,287 - MPMX19_04575 0.26 -1.7
954,287 - MPMX19_04575 0.26 -0.9
954,287 - MPMX19_04575 0.26 -0.6
954,287 - MPMX19_04575 0.26 -0.4
954,287 - MPMX19_04575 0.26 -0.4
954,287 - MPMX19_04575 0.26 -0.5
954,287 - MPMX19_04575 0.26 -1.1
954,287 - MPMX19_04575 0.26 +0.2
954,287 - MPMX19_04575 0.26 -0.5
954,287 - MPMX19_04575 0.26 +0.7
954,287 - MPMX19_04575 0.26 -1.1
954,287 - MPMX19_04575 0.26 +0.0
954,287 - MPMX19_04575 0.26 -1.7
954,326 - MPMX19_04575 0.29 +0.2
954,580 + MPMX19_04575 0.52 +1.7
954,580 + MPMX19_04575 0.52 -1.8
954,581 - MPMX19_04575 0.52 -0.4
954,581 - MPMX19_04575 0.52 -1.7
954,818 - MPMX19_04575 0.73 -0.8
954,818 - MPMX19_04575 0.73 +0.2
955,167 + +0.4
955,167 + -1.0
955,168 - +0.2
955,337 + MPMX19_04576 0.25 +1.7
955,337 + MPMX19_04576 0.25 -1.5
955,337 + MPMX19_04576 0.25 +0.9
955,337 + MPMX19_04576 0.25 +0.2
955,337 + MPMX19_04576 0.25 -1.8
955,337 + MPMX19_04576 0.25 -0.1
955,337 + MPMX19_04576 0.25 +2.1
955,337 + MPMX19_04576 0.25 -0.3
955,337 + MPMX19_04576 0.25 +0.1
955,337 + MPMX19_04576 0.25 -0.6
955,338 - MPMX19_04576 0.25 +0.4
955,338 - MPMX19_04576 0.25 +0.5
955,338 - MPMX19_04576 0.25 -0.3
955,338 - MPMX19_04576 0.25 -0.9
955,338 - MPMX19_04576 0.25 -0.3
955,338 - MPMX19_04576 0.25 -0.2
955,338 - MPMX19_04576 0.25 -1.2
955,338 - MPMX19_04576 0.25 -0.3
955,590 - MPMX19_04576 0.60 +0.1
955,590 - MPMX19_04576 0.60 +0.3
955,661 + MPMX19_04576 0.70 +0.3
955,661 + MPMX19_04576 0.70 -0.2
955,724 + MPMX19_04576 0.79 -2.1
955,724 + MPMX19_04576 0.79 -0.9
955,724 + MPMX19_04576 0.79 -1.6
955,724 + MPMX19_04576 0.79 +0.7
955,725 - MPMX19_04576 0.79 -0.8
955,725 - MPMX19_04576 0.79 -0.3
955,725 - MPMX19_04576 0.79 -0.1
955,748 + MPMX19_04576 0.82 -0.4
955,748 + MPMX19_04576 0.82 -0.3
955,748 + MPMX19_04576 0.82 -1.4
955,749 - MPMX19_04576 0.83 +0.9
955,749 - MPMX19_04576 0.83 -0.0
955,749 - MPMX19_04576 0.83 -1.0
955,749 - MPMX19_04576 0.83 -0.4

Or see this region's nucleotide sequence