Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04548

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04547 and MPMX19_04548 are separated by 137 nucleotidesMPMX19_04548 and MPMX19_04549 are separated by 47 nucleotidesMPMX19_04549 and MPMX19_04550 are separated by 79 nucleotides MPMX19_04547: MPMX19_04547 - D-amino acid dehydrogenase, at 922,118 to 925,087 _04547 MPMX19_04548: MPMX19_04548 - 4-hydroxy-tetrahydrodipicolinate synthase, at 925,225 to 926,118 _04548 MPMX19_04549: MPMX19_04549 - L-cystine-binding protein FliY, at 926,166 to 926,996 _04549 MPMX19_04550: MPMX19_04550 - L-cystine transport system permease protein YecS, at 927,076 to 927,771 _04550 Position (kb) 925 926 927Strain fitness (log2 ratio) -3 -2 -1 0 1at 924.402 kb on + strand, within MPMX19_04547at 924.403 kb on - strand, within MPMX19_04547at 924.403 kb on - strand, within MPMX19_04547at 924.403 kb on - strand, within MPMX19_04547at 924.438 kb on + strand, within MPMX19_04547at 924.439 kb on - strand, within MPMX19_04547at 924.621 kb on + strand, within MPMX19_04547at 924.621 kb on + strand, within MPMX19_04547at 924.622 kb on - strand, within MPMX19_04547at 924.622 kb on - strand, within MPMX19_04547at 924.622 kb on - strand, within MPMX19_04547at 924.622 kb on - strand, within MPMX19_04547at 924.622 kb on - strand, within MPMX19_04547at 924.803 kb on - strandat 924.921 kb on + strandat 924.922 kb on - strandat 924.922 kb on - strandat 924.958 kb on - strandat 924.958 kb on - strandat 925.032 kb on + strandat 925.032 kb on + strandat 925.033 kb on - strandat 925.033 kb on - strandat 925.033 kb on - strandat 925.033 kb on - strandat 925.033 kb on - strandat 925.143 kb on + strandat 925.246 kb on + strandat 925.246 kb on + strandat 925.247 kb on - strandat 925.247 kb on - strandat 925.247 kb on - strandat 925.247 kb on - strandat 925.549 kb on + strand, within MPMX19_04548at 925.549 kb on + strand, within MPMX19_04548at 925.552 kb on + strand, within MPMX19_04548at 925.552 kb on + strand, within MPMX19_04548at 925.552 kb on + strand, within MPMX19_04548at 925.552 kb on + strand, within MPMX19_04548at 925.552 kb on + strand, within MPMX19_04548at 925.553 kb on - strand, within MPMX19_04548at 925.553 kb on - strand, within MPMX19_04548at 925.553 kb on - strand, within MPMX19_04548at 925.553 kb on - strand, within MPMX19_04548at 925.553 kb on - strand, within MPMX19_04548at 925.588 kb on + strand, within MPMX19_04548at 925.630 kb on + strand, within MPMX19_04548at 925.630 kb on + strand, within MPMX19_04548at 925.630 kb on + strand, within MPMX19_04548at 925.630 kb on + strand, within MPMX19_04548at 925.630 kb on + strand, within MPMX19_04548at 925.631 kb on - strand, within MPMX19_04548at 925.631 kb on - strand, within MPMX19_04548at 925.631 kb on - strand, within MPMX19_04548at 925.631 kb on - strand, within MPMX19_04548at 925.631 kb on - strand, within MPMX19_04548at 925.631 kb on - strand, within MPMX19_04548at 925.631 kb on - strand, within MPMX19_04548at 925.631 kb on - strand, within MPMX19_04548at 925.631 kb on - strand, within MPMX19_04548at 925.631 kb on - strand, within MPMX19_04548at 925.631 kb on - strand, within MPMX19_04548at 925.631 kb on - strand, within MPMX19_04548at 925.631 kb on - strand, within MPMX19_04548at 925.631 kb on - strand, within MPMX19_04548at 925.631 kb on - strand, within MPMX19_04548at 925.631 kb on - strand, within MPMX19_04548at 925.708 kb on + strand, within MPMX19_04548at 925.708 kb on + strand, within MPMX19_04548at 925.708 kb on + strand, within MPMX19_04548at 925.708 kb on + strand, within MPMX19_04548at 925.708 kb on + strand, within MPMX19_04548at 925.708 kb on + strand, within MPMX19_04548at 925.709 kb on - strand, within MPMX19_04548at 925.709 kb on - strand, within MPMX19_04548at 925.709 kb on - strand, within MPMX19_04548at 925.709 kb on - strand, within MPMX19_04548at 925.709 kb on - strand, within MPMX19_04548at 925.709 kb on - strand, within MPMX19_04548at 925.709 kb on - strand, within MPMX19_04548at 925.709 kb on - strand, within MPMX19_04548at 925.709 kb on - strand, within MPMX19_04548at 925.927 kb on + strand, within MPMX19_04548at 925.927 kb on + strand, within MPMX19_04548at 925.928 kb on - strand, within MPMX19_04548at 925.928 kb on - strand, within MPMX19_04548at 925.973 kb on - strand, within MPMX19_04548at 926.162 kb on + strandat 926.162 kb on + strandat 926.162 kb on + strandat 926.162 kb on + strandat 926.162 kb on + strandat 926.162 kb on + strandat 926.162 kb on + strandat 926.162 kb on + strandat 926.162 kb on + strandat 926.162 kb on + strandat 926.162 kb on + strandat 926.163 kb on - strandat 926.163 kb on - strandat 926.163 kb on - strandat 926.163 kb on - strandat 926.409 kb on + strand, within MPMX19_04549at 926.409 kb on + strand, within MPMX19_04549at 926.409 kb on + strand, within MPMX19_04549at 926.409 kb on + strand, within MPMX19_04549at 926.410 kb on - strand, within MPMX19_04549at 926.410 kb on - strand, within MPMX19_04549at 926.410 kb on - strand, within MPMX19_04549at 926.526 kb on + strand, within MPMX19_04549at 926.526 kb on + strand, within MPMX19_04549at 926.527 kb on - strand, within MPMX19_04549at 926.527 kb on - strand, within MPMX19_04549at 926.727 kb on + strand, within MPMX19_04549at 926.727 kb on + strand, within MPMX19_04549at 926.727 kb on + strand, within MPMX19_04549at 926.727 kb on + strand, within MPMX19_04549at 926.727 kb on + strand, within MPMX19_04549at 926.728 kb on - strand, within MPMX19_04549at 926.791 kb on - strand, within MPMX19_04549at 926.922 kb on + strandat 926.922 kb on + strandat 926.923 kb on - strandat 926.923 kb on - strandat 926.923 kb on - strandat 926.923 kb on - strandat 927.112 kb on + strandat 927.112 kb on + strandat 927.112 kb on + strandat 927.112 kb on + strandat 927.112 kb on + strandat 927.112 kb on + strandat 927.113 kb on - strandat 927.113 kb on - strandat 927.113 kb on - strandat 927.113 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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924,402 + MPMX19_04547 0.77 +0.8
924,403 - MPMX19_04547 0.77 -0.2
924,403 - MPMX19_04547 0.77 +1.5
924,403 - MPMX19_04547 0.77 +0.4
924,438 + MPMX19_04547 0.78 -2.1
924,439 - MPMX19_04547 0.78 -0.1
924,621 + MPMX19_04547 0.84 +0.8
924,621 + MPMX19_04547 0.84 -0.9
924,622 - MPMX19_04547 0.84 -0.2
924,622 - MPMX19_04547 0.84 -0.8
924,622 - MPMX19_04547 0.84 -0.8
924,622 - MPMX19_04547 0.84 -0.2
924,622 - MPMX19_04547 0.84 +0.7
924,803 - -0.1
924,921 + -1.4
924,922 - +1.2
924,922 - -0.8
924,958 - -1.7
924,958 - -0.3
925,032 + -0.1
925,032 + -0.8
925,033 - +0.4
925,033 - -0.5
925,033 - -1.0
925,033 - -1.0
925,033 - -0.7
925,143 + -1.7
925,246 + -1.3
925,246 + +0.6
925,247 - -0.3
925,247 - +0.6
925,247 - -0.1
925,247 - +0.6
925,549 + MPMX19_04548 0.36 +0.3
925,549 + MPMX19_04548 0.36 -0.9
925,552 + MPMX19_04548 0.37 +0.7
925,552 + MPMX19_04548 0.37 -0.8
925,552 + MPMX19_04548 0.37 -0.1
925,552 + MPMX19_04548 0.37 +0.5
925,552 + MPMX19_04548 0.37 -1.3
925,553 - MPMX19_04548 0.37 -0.6
925,553 - MPMX19_04548 0.37 +0.0
925,553 - MPMX19_04548 0.37 -0.0
925,553 - MPMX19_04548 0.37 -0.8
925,553 - MPMX19_04548 0.37 +0.3
925,588 + MPMX19_04548 0.41 +0.4
925,630 + MPMX19_04548 0.45 -0.4
925,630 + MPMX19_04548 0.45 -0.9
925,630 + MPMX19_04548 0.45 +1.5
925,630 + MPMX19_04548 0.45 -0.1
925,630 + MPMX19_04548 0.45 -1.5
925,631 - MPMX19_04548 0.45 -0.1
925,631 - MPMX19_04548 0.45 -1.2
925,631 - MPMX19_04548 0.45 +1.7
925,631 - MPMX19_04548 0.45 -0.7
925,631 - MPMX19_04548 0.45 -1.2
925,631 - MPMX19_04548 0.45 -0.7
925,631 - MPMX19_04548 0.45 -0.4
925,631 - MPMX19_04548 0.45 -0.1
925,631 - MPMX19_04548 0.45 +0.0
925,631 - MPMX19_04548 0.45 -1.4
925,631 - MPMX19_04548 0.45 -0.8
925,631 - MPMX19_04548 0.45 -0.1
925,631 - MPMX19_04548 0.45 +0.7
925,631 - MPMX19_04548 0.45 +0.2
925,631 - MPMX19_04548 0.45 -1.4
925,631 - MPMX19_04548 0.45 -1.8
925,708 + MPMX19_04548 0.54 -1.7
925,708 + MPMX19_04548 0.54 -1.1
925,708 + MPMX19_04548 0.54 +0.4
925,708 + MPMX19_04548 0.54 +0.7
925,708 + MPMX19_04548 0.54 +0.7
925,708 + MPMX19_04548 0.54 +0.3
925,709 - MPMX19_04548 0.54 +0.3
925,709 - MPMX19_04548 0.54 -0.1
925,709 - MPMX19_04548 0.54 -2.4
925,709 - MPMX19_04548 0.54 +1.4
925,709 - MPMX19_04548 0.54 -0.1
925,709 - MPMX19_04548 0.54 -0.8
925,709 - MPMX19_04548 0.54 +0.7
925,709 - MPMX19_04548 0.54 +1.4
925,709 - MPMX19_04548 0.54 +0.0
925,927 + MPMX19_04548 0.79 -0.5
925,927 + MPMX19_04548 0.79 -0.1
925,928 - MPMX19_04548 0.79 +1.3
925,928 - MPMX19_04548 0.79 -0.1
925,973 - MPMX19_04548 0.84 +0.9
926,162 + -0.9
926,162 + +0.3
926,162 + -1.1
926,162 + -2.8
926,162 + +0.2
926,162 + -0.8
926,162 + -1.1
926,162 + +0.5
926,162 + +0.7
926,162 + -0.7
926,162 + -1.5
926,163 - -0.1
926,163 - +0.2
926,163 - -0.6
926,163 - -0.2
926,409 + MPMX19_04549 0.29 +0.4
926,409 + MPMX19_04549 0.29 +1.5
926,409 + MPMX19_04549 0.29 +1.2
926,409 + MPMX19_04549 0.29 -0.8
926,410 - MPMX19_04549 0.29 +0.5
926,410 - MPMX19_04549 0.29 -1.1
926,410 - MPMX19_04549 0.29 -1.7
926,526 + MPMX19_04549 0.43 -2.4
926,526 + MPMX19_04549 0.43 -0.5
926,527 - MPMX19_04549 0.43 -1.2
926,527 - MPMX19_04549 0.43 -0.4
926,727 + MPMX19_04549 0.68 -1.3
926,727 + MPMX19_04549 0.68 -0.3
926,727 + MPMX19_04549 0.68 +0.2
926,727 + MPMX19_04549 0.68 -1.8
926,727 + MPMX19_04549 0.68 +0.3
926,728 - MPMX19_04549 0.68 -1.8
926,791 - MPMX19_04549 0.75 -0.7
926,922 + -1.6
926,922 + -0.4
926,923 - -1.7
926,923 - -0.5
926,923 - -0.1
926,923 - +1.0
927,112 + -0.8
927,112 + +0.6
927,112 + -0.4
927,112 + -1.1
927,112 + +0.2
927,112 + -2.2
927,113 - -1.3
927,113 - -2.3
927,113 - -0.6
927,113 - -1.0

Or see this region's nucleotide sequence