Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04513

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04512 and MPMX19_04513 are separated by 11 nucleotidesMPMX19_04513 and MPMX19_04514 overlap by 4 nucleotides MPMX19_04512: MPMX19_04512 - C4-dicarboxylate transport transcriptional regulatory protein DctD, at 882,406 to 883,761 _04512 MPMX19_04513: MPMX19_04513 - Adaptive-response sensory-kinase SasA, at 883,773 to 886,277 _04513 MPMX19_04514: MPMX19_04514 - hypothetical protein, at 886,274 to 887,701 _04514 Position (kb) 883 884 885 886 887Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 882.866 kb on + strand, within MPMX19_04512at 882.866 kb on + strand, within MPMX19_04512at 882.866 kb on + strand, within MPMX19_04512at 882.866 kb on + strand, within MPMX19_04512at 882.866 kb on + strand, within MPMX19_04512at 882.866 kb on + strand, within MPMX19_04512at 882.866 kb on + strand, within MPMX19_04512at 882.866 kb on + strand, within MPMX19_04512at 882.866 kb on + strand, within MPMX19_04512at 882.866 kb on + strand, within MPMX19_04512at 882.866 kb on + strand, within MPMX19_04512at 882.867 kb on - strand, within MPMX19_04512at 882.867 kb on - strand, within MPMX19_04512at 882.867 kb on - strand, within MPMX19_04512at 882.867 kb on - strand, within MPMX19_04512at 882.867 kb on - strand, within MPMX19_04512at 882.867 kb on - strand, within MPMX19_04512at 882.867 kb on - strand, within MPMX19_04512at 882.867 kb on - strand, within MPMX19_04512at 883.071 kb on - strand, within MPMX19_04512at 883.071 kb on - strand, within MPMX19_04512at 883.071 kb on - strand, within MPMX19_04512at 883.475 kb on + strand, within MPMX19_04512at 883.475 kb on + strand, within MPMX19_04512at 883.475 kb on + strand, within MPMX19_04512at 883.475 kb on + strand, within MPMX19_04512at 883.476 kb on - strand, within MPMX19_04512at 883.864 kb on + strandat 883.864 kb on + strandat 883.864 kb on + strandat 883.864 kb on + strandat 883.864 kb on + strandat 883.864 kb on + strandat 883.864 kb on + strandat 883.864 kb on + strandat 883.864 kb on + strandat 883.864 kb on + strandat 883.864 kb on + strandat 883.865 kb on - strandat 883.865 kb on - strandat 883.865 kb on - strandat 883.865 kb on - strandat 883.865 kb on - strandat 883.865 kb on - strandat 883.865 kb on - strandat 883.865 kb on - strandat 883.865 kb on - strandat 883.865 kb on - strandat 884.401 kb on + strand, within MPMX19_04513at 884.401 kb on + strand, within MPMX19_04513at 884.401 kb on + strand, within MPMX19_04513at 884.401 kb on + strand, within MPMX19_04513at 884.402 kb on - strand, within MPMX19_04513at 884.785 kb on - strand, within MPMX19_04513at 884.785 kb on - strand, within MPMX19_04513at 884.785 kb on - strand, within MPMX19_04513at 884.785 kb on - strand, within MPMX19_04513at 885.175 kb on + strand, within MPMX19_04513at 885.175 kb on + strand, within MPMX19_04513at 885.176 kb on - strand, within MPMX19_04513at 885.176 kb on - strand, within MPMX19_04513at 885.176 kb on - strand, within MPMX19_04513at 885.176 kb on - strand, within MPMX19_04513at 886.120 kb on + strandat 886.120 kb on + strandat 886.120 kb on + strandat 886.120 kb on + strandat 886.121 kb on - strandat 886.121 kb on - strandat 886.121 kb on - strandat 886.644 kb on + strand, within MPMX19_04514at 886.644 kb on + strand, within MPMX19_04514at 886.644 kb on + strand, within MPMX19_04514at 886.645 kb on - strand, within MPMX19_04514at 886.737 kb on + strand, within MPMX19_04514at 887.049 kb on + strand, within MPMX19_04514at 887.049 kb on + strand, within MPMX19_04514at 887.049 kb on + strand, within MPMX19_04514at 887.049 kb on + strand, within MPMX19_04514at 887.049 kb on + strand, within MPMX19_04514at 887.049 kb on + strand, within MPMX19_04514at 887.050 kb on - strand, within MPMX19_04514at 887.050 kb on - strand, within MPMX19_04514at 887.050 kb on - strand, within MPMX19_04514at 887.050 kb on - strand, within MPMX19_04514at 887.050 kb on - strand, within MPMX19_04514at 887.050 kb on - strand, within MPMX19_04514at 887.050 kb on - strand, within MPMX19_04514at 887.050 kb on - strand, within MPMX19_04514at 887.050 kb on - strand, within MPMX19_04514at 887.050 kb on - strand, within MPMX19_04514at 887.050 kb on - strand, within MPMX19_04514at 887.200 kb on - strand, within MPMX19_04514at 887.259 kb on + strand, within MPMX19_04514at 887.260 kb on - strand, within MPMX19_04514at 887.260 kb on - strand, within MPMX19_04514at 887.260 kb on - strand, within MPMX19_04514at 887.260 kb on - strand, within MPMX19_04514

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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882,866 + MPMX19_04512 0.34 -0.3
882,866 + MPMX19_04512 0.34 +0.4
882,866 + MPMX19_04512 0.34 +0.2
882,866 + MPMX19_04512 0.34 -1.9
882,866 + MPMX19_04512 0.34 -0.7
882,866 + MPMX19_04512 0.34 -0.1
882,866 + MPMX19_04512 0.34 +0.6
882,866 + MPMX19_04512 0.34 +0.8
882,866 + MPMX19_04512 0.34 +0.5
882,866 + MPMX19_04512 0.34 -1.1
882,866 + MPMX19_04512 0.34 +0.4
882,867 - MPMX19_04512 0.34 +0.7
882,867 - MPMX19_04512 0.34 +0.4
882,867 - MPMX19_04512 0.34 +0.4
882,867 - MPMX19_04512 0.34 -0.3
882,867 - MPMX19_04512 0.34 +1.0
882,867 - MPMX19_04512 0.34 -0.2
882,867 - MPMX19_04512 0.34 +0.2
882,867 - MPMX19_04512 0.34 -0.5
883,071 - MPMX19_04512 0.49 -0.4
883,071 - MPMX19_04512 0.49 -0.8
883,071 - MPMX19_04512 0.49 -0.5
883,475 + MPMX19_04512 0.79 -0.4
883,475 + MPMX19_04512 0.79 -0.0
883,475 + MPMX19_04512 0.79 +0.6
883,475 + MPMX19_04512 0.79 -3.0
883,476 - MPMX19_04512 0.79 -1.1
883,864 + -1.3
883,864 + +0.7
883,864 + -1.3
883,864 + -0.4
883,864 + +0.4
883,864 + -1.2
883,864 + -0.8
883,864 + +0.3
883,864 + +0.5
883,864 + +0.5
883,864 + -1.8
883,865 - -0.7
883,865 - +1.0
883,865 - -0.3
883,865 - -0.3
883,865 - +0.0
883,865 - +0.2
883,865 - -1.4
883,865 - +0.0
883,865 - +0.3
883,865 - -1.7
884,401 + MPMX19_04513 0.25 +0.5
884,401 + MPMX19_04513 0.25 -0.4
884,401 + MPMX19_04513 0.25 -0.6
884,401 + MPMX19_04513 0.25 -1.0
884,402 - MPMX19_04513 0.25 -0.0
884,785 - MPMX19_04513 0.40 -0.5
884,785 - MPMX19_04513 0.40 -0.5
884,785 - MPMX19_04513 0.40 -1.5
884,785 - MPMX19_04513 0.40 -0.5
885,175 + MPMX19_04513 0.56 -0.9
885,175 + MPMX19_04513 0.56 -0.4
885,176 - MPMX19_04513 0.56 +1.0
885,176 - MPMX19_04513 0.56 -0.4
885,176 - MPMX19_04513 0.56 -2.3
885,176 - MPMX19_04513 0.56 -0.3
886,120 + +0.3
886,120 + +1.0
886,120 + -1.1
886,120 + -1.1
886,121 - +0.3
886,121 - +1.6
886,121 - +0.7
886,644 + MPMX19_04514 0.26 +0.3
886,644 + MPMX19_04514 0.26 +0.4
886,644 + MPMX19_04514 0.26 -0.1
886,645 - MPMX19_04514 0.26 +0.7
886,737 + MPMX19_04514 0.32 +0.7
887,049 + MPMX19_04514 0.54 -1.1
887,049 + MPMX19_04514 0.54 +0.8
887,049 + MPMX19_04514 0.54 +0.6
887,049 + MPMX19_04514 0.54 -0.6
887,049 + MPMX19_04514 0.54 -1.4
887,049 + MPMX19_04514 0.54 -2.3
887,050 - MPMX19_04514 0.54 -0.7
887,050 - MPMX19_04514 0.54 -1.1
887,050 - MPMX19_04514 0.54 +1.7
887,050 - MPMX19_04514 0.54 +1.3
887,050 - MPMX19_04514 0.54 +0.2
887,050 - MPMX19_04514 0.54 +0.0
887,050 - MPMX19_04514 0.54 -0.5
887,050 - MPMX19_04514 0.54 -1.3
887,050 - MPMX19_04514 0.54 +0.0
887,050 - MPMX19_04514 0.54 +2.2
887,050 - MPMX19_04514 0.54 -0.8
887,200 - MPMX19_04514 0.65 -0.1
887,259 + MPMX19_04514 0.69 +0.2
887,260 - MPMX19_04514 0.69 -1.0
887,260 - MPMX19_04514 0.69 -0.8
887,260 - MPMX19_04514 0.69 +1.0
887,260 - MPMX19_04514 0.69 -0.5

Or see this region's nucleotide sequence