Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04491 and MPMX19_04492 are separated by 233 nucleotides MPMX19_04492 and MPMX19_04493 are separated by 215 nucleotides MPMX19_04493 and MPMX19_04494 are separated by 245 nucleotides
MPMX19_04491: MPMX19_04491 - Sensor histidine kinase RcsC, at 857,559 to 860,075
_04491
MPMX19_04492: MPMX19_04492 - hypothetical protein, at 860,309 to 860,551
_04492
MPMX19_04493: MPMX19_04493 - PCP degradation transcriptional activation protein, at 860,767 to 861,780
_04493
MPMX19_04494: MPMX19_04494 - p-hydroxybenzoic acid efflux pump subunit AaeA, at 862,026 to 862,979
_04494
Position (kb) 860
861
862 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 859.782 kb on + strand, within MPMX19_04491 at 859.782 kb on + strand, within MPMX19_04491 at 859.782 kb on + strand, within MPMX19_04491 at 859.783 kb on - strand, within MPMX19_04491 at 859.783 kb on - strand, within MPMX19_04491 at 859.783 kb on - strand, within MPMX19_04491 at 859.783 kb on - strand, within MPMX19_04491 at 859.903 kb on + strand at 859.903 kb on + strand at 859.903 kb on + strand at 859.903 kb on + strand at 859.903 kb on + strand at 859.903 kb on + strand at 859.903 kb on + strand at 859.904 kb on - strand at 859.904 kb on - strand at 859.904 kb on - strand at 859.904 kb on - strand at 859.904 kb on - strand at 859.904 kb on - strand at 859.904 kb on - strand at 859.915 kb on + strand at 859.915 kb on + strand at 859.915 kb on + strand at 859.915 kb on + strand at 859.915 kb on + strand at 859.916 kb on - strand at 859.916 kb on - strand at 859.916 kb on - strand at 859.916 kb on - strand at 859.916 kb on - strand at 859.916 kb on - strand at 860.196 kb on + strand at 860.196 kb on + strand at 860.196 kb on + strand at 860.196 kb on + strand at 860.196 kb on + strand at 860.197 kb on - strand at 860.197 kb on - strand at 860.197 kb on - strand at 860.197 kb on - strand at 860.197 kb on - strand at 860.197 kb on - strand at 860.198 kb on + strand at 860.198 kb on + strand at 860.198 kb on + strand at 860.199 kb on - strand at 860.349 kb on + strand, within MPMX19_04492 at 860.349 kb on + strand, within MPMX19_04492 at 860.349 kb on + strand, within MPMX19_04492 at 860.349 kb on + strand, within MPMX19_04492 at 860.349 kb on + strand, within MPMX19_04492 at 860.350 kb on - strand, within MPMX19_04492 at 860.350 kb on - strand, within MPMX19_04492 at 860.350 kb on - strand, within MPMX19_04492 at 860.528 kb on + strand at 860.528 kb on + strand at 860.529 kb on - strand at 860.529 kb on - strand at 860.529 kb on - strand at 860.558 kb on + strand at 860.558 kb on + strand at 860.558 kb on + strand at 860.558 kb on + strand at 860.610 kb on + strand at 860.610 kb on + strand at 860.610 kb on + strand at 860.610 kb on + strand at 860.610 kb on + strand at 860.610 kb on + strand at 860.610 kb on + strand at 860.611 kb on - strand at 860.611 kb on - strand at 860.676 kb on + strand at 860.676 kb on + strand at 860.676 kb on + strand at 860.677 kb on - strand at 861.097 kb on + strand, within MPMX19_04493 at 861.097 kb on + strand, within MPMX19_04493 at 861.097 kb on + strand, within MPMX19_04493 at 861.097 kb on + strand, within MPMX19_04493 at 861.097 kb on + strand, within MPMX19_04493 at 861.098 kb on - strand, within MPMX19_04493 at 861.098 kb on - strand, within MPMX19_04493 at 861.098 kb on - strand, within MPMX19_04493 at 861.434 kb on + strand, within MPMX19_04493 at 861.434 kb on + strand, within MPMX19_04493 at 861.434 kb on + strand, within MPMX19_04493 at 861.435 kb on - strand, within MPMX19_04493 at 861.526 kb on + strand, within MPMX19_04493 at 861.526 kb on + strand, within MPMX19_04493 at 861.526 kb on + strand, within MPMX19_04493 at 861.526 kb on + strand, within MPMX19_04493 at 861.526 kb on + strand, within MPMX19_04493 at 861.527 kb on - strand, within MPMX19_04493 at 861.527 kb on - strand, within MPMX19_04493 at 861.527 kb on - strand, within MPMX19_04493 at 861.527 kb on - strand, within MPMX19_04493 at 861.527 kb on - strand, within MPMX19_04493 at 861.637 kb on + strand, within MPMX19_04493 at 861.637 kb on + strand, within MPMX19_04493 at 861.637 kb on + strand, within MPMX19_04493 at 861.637 kb on + strand, within MPMX19_04493 at 861.637 kb on + strand, within MPMX19_04493 at 861.638 kb on - strand, within MPMX19_04493 at 861.638 kb on - strand, within MPMX19_04493 at 861.638 kb on - strand, within MPMX19_04493 at 861.638 kb on - strand, within MPMX19_04493 at 861.638 kb on - strand, within MPMX19_04493 at 861.779 kb on - strand at 861.812 kb on + strand at 861.812 kb on + strand at 861.813 kb on - strand at 861.813 kb on - strand at 861.817 kb on - strand at 861.817 kb on - strand at 861.817 kb on - strand at 861.817 kb on - strand at 861.857 kb on + strand at 861.857 kb on + strand at 861.857 kb on + strand at 861.858 kb on - strand at 861.858 kb on - strand at 861.858 kb on - strand at 861.858 kb on - strand at 861.912 kb on + strand at 861.913 kb on - strand at 861.913 kb on - strand at 861.913 kb on - strand at 861.926 kb on - strand at 861.926 kb on - strand at 862.298 kb on + strand, within MPMX19_04494 at 862.298 kb on + strand, within MPMX19_04494 at 862.298 kb on + strand, within MPMX19_04494 at 862.298 kb on + strand, within MPMX19_04494 at 862.298 kb on + strand, within MPMX19_04494 at 862.298 kb on + strand, within MPMX19_04494 at 862.298 kb on + strand, within MPMX19_04494 at 862.298 kb on + strand, within MPMX19_04494 at 862.298 kb on + strand, within MPMX19_04494 at 862.299 kb on - strand, within MPMX19_04494 at 862.299 kb on - strand, within MPMX19_04494 at 862.368 kb on + strand, within MPMX19_04494 at 862.368 kb on + strand, within MPMX19_04494 at 862.368 kb on + strand, within MPMX19_04494 at 862.369 kb on - strand, within MPMX19_04494 at 862.369 kb on - strand, within MPMX19_04494 at 862.369 kb on - strand, within MPMX19_04494 at 862.369 kb on - strand, within MPMX19_04494 at 862.380 kb on + strand, within MPMX19_04494 at 862.380 kb on + strand, within MPMX19_04494 at 862.381 kb on - strand, within MPMX19_04494 at 862.381 kb on - strand, within MPMX19_04494 at 862.381 kb on - strand, within MPMX19_04494 at 862.381 kb on - strand, within MPMX19_04494 at 862.381 kb on - strand, within MPMX19_04494 at 862.381 kb on - strand, within MPMX19_04494
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 859,782 + MPMX19_04491 0.88 -1.3 859,782 + MPMX19_04491 0.88 +0.5 859,782 + MPMX19_04491 0.88 +1.1 859,783 - MPMX19_04491 0.88 -2.0 859,783 - MPMX19_04491 0.88 -1.4 859,783 - MPMX19_04491 0.88 -0.8 859,783 - MPMX19_04491 0.88 -1.1 859,903 + -0.1 859,903 + +0.4 859,903 + -0.0 859,903 + -0.5 859,903 + +0.4 859,903 + +0.2 859,903 + -1.4 859,904 - -1.3 859,904 - +0.3 859,904 - -0.6 859,904 - -1.1 859,904 - -1.7 859,904 - -0.3 859,904 - -0.2 859,915 + +0.7 859,915 + +0.0 859,915 + -3.7 859,915 + +0.0 859,915 + -1.3 859,916 - -0.2 859,916 - -0.1 859,916 - -2.6 859,916 - +0.2 859,916 - +0.3 859,916 - -1.1 860,196 + +0.3 860,196 + -0.8 860,196 + -1.1 860,196 + +1.0 860,196 + -0.0 860,197 - +0.8 860,197 - +0.0 860,197 - -0.1 860,197 - +0.3 860,197 - +0.4 860,197 - -0.6 860,198 + +0.7 860,198 + +0.0 860,198 + -1.0 860,199 - +0.0 860,349 + MPMX19_04492 0.16 -0.5 860,349 + MPMX19_04492 0.16 +0.9 860,349 + MPMX19_04492 0.16 +2.1 860,349 + MPMX19_04492 0.16 -1.5 860,349 + MPMX19_04492 0.16 +0.7 860,350 - MPMX19_04492 0.17 +1.0 860,350 - MPMX19_04492 0.17 -1.3 860,350 - MPMX19_04492 0.17 -0.5 860,528 + +0.6 860,528 + -2.3 860,529 - -0.8 860,529 - -1.9 860,529 - -1.8 860,558 + -0.8 860,558 + -2.3 860,558 + +1.0 860,558 + -0.7 860,610 + +1.1 860,610 + -1.2 860,610 + -1.8 860,610 + +1.1 860,610 + -1.3 860,610 + +0.7 860,610 + +1.0 860,611 - +1.7 860,611 - -0.1 860,676 + -0.3 860,676 + +1.8 860,676 + +1.7 860,677 - -0.7 861,097 + MPMX19_04493 0.33 -1.7 861,097 + MPMX19_04493 0.33 -0.6 861,097 + MPMX19_04493 0.33 -1.7 861,097 + MPMX19_04493 0.33 -1.2 861,097 + MPMX19_04493 0.33 +0.7 861,098 - MPMX19_04493 0.33 +0.7 861,098 - MPMX19_04493 0.33 +0.7 861,098 - MPMX19_04493 0.33 -1.3 861,434 + MPMX19_04493 0.66 -1.4 861,434 + MPMX19_04493 0.66 -1.6 861,434 + MPMX19_04493 0.66 +0.4 861,435 - MPMX19_04493 0.66 +0.9 861,526 + MPMX19_04493 0.75 -0.6 861,526 + MPMX19_04493 0.75 +1.3 861,526 + MPMX19_04493 0.75 +0.2 861,526 + MPMX19_04493 0.75 +1.3 861,526 + MPMX19_04493 0.75 +0.3 861,527 - MPMX19_04493 0.75 +0.4 861,527 - MPMX19_04493 0.75 +0.0 861,527 - MPMX19_04493 0.75 +0.2 861,527 - MPMX19_04493 0.75 -0.4 861,527 - MPMX19_04493 0.75 +0.3 861,637 + MPMX19_04493 0.86 -0.8 861,637 + MPMX19_04493 0.86 -1.4 861,637 + MPMX19_04493 0.86 +0.9 861,637 + MPMX19_04493 0.86 -0.4 861,637 + MPMX19_04493 0.86 -1.7 861,638 - MPMX19_04493 0.86 +1.9 861,638 - MPMX19_04493 0.86 +0.0 861,638 - MPMX19_04493 0.86 -2.0 861,638 - MPMX19_04493 0.86 -0.6 861,638 - MPMX19_04493 0.86 +0.9 861,779 - -1.3 861,812 + +1.2 861,812 + +0.8 861,813 - +1.1 861,813 - +0.0 861,817 - +0.3 861,817 - -0.2 861,817 - +0.4 861,817 - -2.2 861,857 + +0.0 861,857 + -0.5 861,857 + -0.3 861,858 - +0.0 861,858 - -0.7 861,858 - +0.3 861,858 - -0.1 861,912 + +0.0 861,913 - -0.2 861,913 - +0.9 861,913 - -0.2 861,926 - -1.1 861,926 - -0.3 862,298 + MPMX19_04494 0.29 -0.8 862,298 + MPMX19_04494 0.29 -0.6 862,298 + MPMX19_04494 0.29 -0.3 862,298 + MPMX19_04494 0.29 +0.7 862,298 + MPMX19_04494 0.29 -1.3 862,298 + MPMX19_04494 0.29 +0.6 862,298 + MPMX19_04494 0.29 -1.1 862,298 + MPMX19_04494 0.29 +2.2 862,298 + MPMX19_04494 0.29 -0.5 862,299 - MPMX19_04494 0.29 +1.3 862,299 - MPMX19_04494 0.29 -0.1 862,368 + MPMX19_04494 0.36 +0.4 862,368 + MPMX19_04494 0.36 -1.8 862,368 + MPMX19_04494 0.36 +0.0 862,369 - MPMX19_04494 0.36 +0.5 862,369 - MPMX19_04494 0.36 +0.7 862,369 - MPMX19_04494 0.36 -1.8 862,369 - MPMX19_04494 0.36 +0.2 862,380 + MPMX19_04494 0.37 -0.1 862,380 + MPMX19_04494 0.37 +0.5 862,381 - MPMX19_04494 0.37 -1.0 862,381 - MPMX19_04494 0.37 +1.7 862,381 - MPMX19_04494 0.37 -0.1 862,381 - MPMX19_04494 0.37 -1.6 862,381 - MPMX19_04494 0.37 -0.4 862,381 - MPMX19_04494 0.37 -1.6
Or see this region's nucleotide sequence