Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04457

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04456 and MPMX19_04457 are separated by 61 nucleotidesMPMX19_04457 and MPMX19_04458 overlap by 4 nucleotidesMPMX19_04458 and MPMX19_04459 are separated by 154 nucleotides MPMX19_04456: MPMX19_04456 - Histone deacetylase-like amidohydrolase, at 822,826 to 823,755 _04456 MPMX19_04457: MPMX19_04457 - Pyruvate, phosphate dikinase, at 823,817 to 825,532 _04457 MPMX19_04458: MPMX19_04458 - 2-hydroxy-3-oxopropionate reductase, at 825,529 to 826,107 _04458 MPMX19_04459: MPMX19_04459 - hypothetical protein, at 826,262 to 827,056 _04459 Position (kb) 823 824 825 826Strain fitness (log2 ratio) -2 -1 0 1 2at 823.012 kb on + strand, within MPMX19_04456at 823.012 kb on + strand, within MPMX19_04456at 823.012 kb on + strand, within MPMX19_04456at 823.012 kb on + strand, within MPMX19_04456at 823.012 kb on + strand, within MPMX19_04456at 823.012 kb on + strand, within MPMX19_04456at 823.012 kb on + strand, within MPMX19_04456at 823.012 kb on + strand, within MPMX19_04456at 823.012 kb on + strand, within MPMX19_04456at 823.012 kb on + strand, within MPMX19_04456at 823.013 kb on - strand, within MPMX19_04456at 823.013 kb on - strand, within MPMX19_04456at 823.013 kb on - strand, within MPMX19_04456at 823.013 kb on - strand, within MPMX19_04456at 823.013 kb on - strand, within MPMX19_04456at 823.013 kb on - strand, within MPMX19_04456at 823.013 kb on - strand, within MPMX19_04456at 823.013 kb on - strand, within MPMX19_04456at 823.013 kb on - strand, within MPMX19_04456at 823.013 kb on - strand, within MPMX19_04456at 823.013 kb on - strand, within MPMX19_04456at 823.013 kb on - strand, within MPMX19_04456at 823.051 kb on + strand, within MPMX19_04456at 823.051 kb on + strand, within MPMX19_04456at 823.393 kb on + strand, within MPMX19_04456at 823.393 kb on + strand, within MPMX19_04456at 823.393 kb on + strand, within MPMX19_04456at 823.394 kb on - strand, within MPMX19_04456at 823.462 kb on + strand, within MPMX19_04456at 823.463 kb on - strand, within MPMX19_04456at 823.463 kb on - strand, within MPMX19_04456at 823.463 kb on - strand, within MPMX19_04456at 823.463 kb on - strand, within MPMX19_04456at 823.463 kb on - strand, within MPMX19_04456at 823.463 kb on - strand, within MPMX19_04456at 823.693 kb on + strandat 823.693 kb on + strandat 823.734 kb on + strandat 823.734 kb on + strandat 823.734 kb on + strandat 823.734 kb on + strandat 823.735 kb on - strandat 823.735 kb on - strandat 823.735 kb on - strandat 823.735 kb on - strandat 823.735 kb on - strandat 823.735 kb on - strandat 823.735 kb on - strandat 823.753 kb on + strandat 823.754 kb on - strandat 824.455 kb on + strand, within MPMX19_04457at 824.455 kb on + strand, within MPMX19_04457at 824.523 kb on + strand, within MPMX19_04457at 824.523 kb on + strand, within MPMX19_04457at 824.523 kb on + strand, within MPMX19_04457at 824.523 kb on + strand, within MPMX19_04457at 824.524 kb on - strand, within MPMX19_04457at 824.524 kb on - strand, within MPMX19_04457at 824.524 kb on - strand, within MPMX19_04457at 824.524 kb on - strand, within MPMX19_04457at 824.524 kb on - strand, within MPMX19_04457at 825.060 kb on + strand, within MPMX19_04457at 825.060 kb on + strand, within MPMX19_04457at 825.060 kb on + strand, within MPMX19_04457at 825.060 kb on + strand, within MPMX19_04457at 825.060 kb on + strand, within MPMX19_04457at 825.061 kb on - strand, within MPMX19_04457at 825.061 kb on - strand, within MPMX19_04457at 825.061 kb on - strand, within MPMX19_04457at 825.061 kb on - strand, within MPMX19_04457at 825.061 kb on - strand, within MPMX19_04457at 825.061 kb on - strand, within MPMX19_04457at 825.687 kb on + strand, within MPMX19_04458at 825.688 kb on - strand, within MPMX19_04458at 825.762 kb on + strand, within MPMX19_04458at 825.763 kb on - strand, within MPMX19_04458at 825.763 kb on - strand, within MPMX19_04458at 825.763 kb on - strand, within MPMX19_04458at 825.763 kb on - strand, within MPMX19_04458at 825.763 kb on - strand, within MPMX19_04458at 826.208 kb on + strandat 826.257 kb on + strandat 826.274 kb on - strandat 826.477 kb on - strand, within MPMX19_04459at 826.477 kb on - strand, within MPMX19_04459at 826.477 kb on - strand, within MPMX19_04459at 826.477 kb on - strand, within MPMX19_04459at 826.477 kb on - strand, within MPMX19_04459at 826.477 kb on - strand, within MPMX19_04459

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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823,012 + MPMX19_04456 0.20 -0.3
823,012 + MPMX19_04456 0.20 +0.2
823,012 + MPMX19_04456 0.20 -0.3
823,012 + MPMX19_04456 0.20 -0.3
823,012 + MPMX19_04456 0.20 +0.6
823,012 + MPMX19_04456 0.20 +1.3
823,012 + MPMX19_04456 0.20 +0.5
823,012 + MPMX19_04456 0.20 -1.0
823,012 + MPMX19_04456 0.20 -2.3
823,012 + MPMX19_04456 0.20 -0.4
823,013 - MPMX19_04456 0.20 -0.6
823,013 - MPMX19_04456 0.20 +1.2
823,013 - MPMX19_04456 0.20 -2.0
823,013 - MPMX19_04456 0.20 +1.3
823,013 - MPMX19_04456 0.20 +0.2
823,013 - MPMX19_04456 0.20 +0.0
823,013 - MPMX19_04456 0.20 +0.7
823,013 - MPMX19_04456 0.20 -0.5
823,013 - MPMX19_04456 0.20 -0.3
823,013 - MPMX19_04456 0.20 -1.6
823,013 - MPMX19_04456 0.20 -0.3
823,013 - MPMX19_04456 0.20 -0.4
823,051 + MPMX19_04456 0.24 -0.1
823,051 + MPMX19_04456 0.24 +2.0
823,393 + MPMX19_04456 0.61 -0.6
823,393 + MPMX19_04456 0.61 -0.1
823,393 + MPMX19_04456 0.61 -0.4
823,394 - MPMX19_04456 0.61 +0.8
823,462 + MPMX19_04456 0.68 -2.5
823,463 - MPMX19_04456 0.68 -0.5
823,463 - MPMX19_04456 0.68 -2.3
823,463 - MPMX19_04456 0.68 -1.4
823,463 - MPMX19_04456 0.68 -2.3
823,463 - MPMX19_04456 0.68 +1.2
823,463 - MPMX19_04456 0.68 -1.2
823,693 + -1.5
823,693 + -0.8
823,734 + -0.7
823,734 + +1.1
823,734 + +0.1
823,734 + -1.8
823,735 - -0.7
823,735 - -0.3
823,735 - -1.2
823,735 - -2.1
823,735 - -0.9
823,735 - -1.1
823,735 - -0.2
823,753 + -1.0
823,754 - -0.3
824,455 + MPMX19_04457 0.37 +0.3
824,455 + MPMX19_04457 0.37 +1.1
824,523 + MPMX19_04457 0.41 -0.2
824,523 + MPMX19_04457 0.41 -0.6
824,523 + MPMX19_04457 0.41 +0.7
824,523 + MPMX19_04457 0.41 -0.0
824,524 - MPMX19_04457 0.41 +0.2
824,524 - MPMX19_04457 0.41 +0.2
824,524 - MPMX19_04457 0.41 +1.1
824,524 - MPMX19_04457 0.41 -2.0
824,524 - MPMX19_04457 0.41 -0.7
825,060 + MPMX19_04457 0.72 +0.2
825,060 + MPMX19_04457 0.72 -0.1
825,060 + MPMX19_04457 0.72 -0.6
825,060 + MPMX19_04457 0.72 -1.4
825,060 + MPMX19_04457 0.72 -1.3
825,061 - MPMX19_04457 0.72 +0.9
825,061 - MPMX19_04457 0.72 +0.9
825,061 - MPMX19_04457 0.72 +0.3
825,061 - MPMX19_04457 0.72 -0.8
825,061 - MPMX19_04457 0.72 -0.3
825,061 - MPMX19_04457 0.72 -0.7
825,687 + MPMX19_04458 0.27 -0.4
825,688 - MPMX19_04458 0.27 -2.0
825,762 + MPMX19_04458 0.40 -1.0
825,763 - MPMX19_04458 0.40 -1.7
825,763 - MPMX19_04458 0.40 +1.5
825,763 - MPMX19_04458 0.40 -0.3
825,763 - MPMX19_04458 0.40 +0.7
825,763 - MPMX19_04458 0.40 +0.3
826,208 + -0.1
826,257 + -1.3
826,274 - -0.9
826,477 - MPMX19_04459 0.27 -1.6
826,477 - MPMX19_04459 0.27 -0.9
826,477 - MPMX19_04459 0.27 +0.7
826,477 - MPMX19_04459 0.27 +0.6
826,477 - MPMX19_04459 0.27 -1.1
826,477 - MPMX19_04459 0.27 +0.2

Or see this region's nucleotide sequence