Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04448 and MPMX19_04449 are separated by 152 nucleotides MPMX19_04449 and MPMX19_04450 are separated by 86 nucleotides MPMX19_04450 and MPMX19_04451 are separated by 226 nucleotides
MPMX19_04448: MPMX19_04448 - NAD(P) transhydrogenase subunit alpha part 1, at 815,092 to 816,261
_04448
MPMX19_04449: MPMX19_04449 - Inosine-5'-monophosphate dehydrogenase, at 816,414 to 816,923
_04449
MPMX19_04450: MPMX19_04450 - hypothetical protein, at 817,010 to 818,038
_04450
MPMX19_04451: MPMX19_04451 - hypothetical protein, at 818,265 to 819,008
_04451
Position (kb)
817
818
819 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 816.113 kb on + strand, within MPMX19_04448 at 816.113 kb on + strand, within MPMX19_04448 at 816.113 kb on + strand, within MPMX19_04448 at 816.301 kb on - strand at 816.301 kb on - strand at 816.670 kb on + strand, within MPMX19_04449 at 816.670 kb on + strand, within MPMX19_04449 at 816.670 kb on + strand, within MPMX19_04449 at 816.671 kb on - strand, within MPMX19_04449 at 816.671 kb on - strand, within MPMX19_04449 at 817.068 kb on + strand at 817.068 kb on + strand at 817.068 kb on + strand at 817.069 kb on - strand at 817.069 kb on - strand at 817.560 kb on + strand, within MPMX19_04450 at 817.560 kb on + strand, within MPMX19_04450 at 817.560 kb on + strand, within MPMX19_04450 at 817.561 kb on - strand, within MPMX19_04450 at 817.561 kb on - strand, within MPMX19_04450 at 817.561 kb on - strand, within MPMX19_04450 at 817.561 kb on - strand, within MPMX19_04450 at 817.561 kb on - strand, within MPMX19_04450 at 817.561 kb on - strand, within MPMX19_04450 at 817.561 kb on - strand, within MPMX19_04450 at 817.561 kb on - strand, within MPMX19_04450 at 817.561 kb on - strand, within MPMX19_04450 at 817.561 kb on - strand, within MPMX19_04450 at 817.605 kb on + strand, within MPMX19_04450 at 817.605 kb on + strand, within MPMX19_04450 at 817.710 kb on + strand, within MPMX19_04450 at 817.711 kb on - strand, within MPMX19_04450 at 817.711 kb on - strand, within MPMX19_04450 at 817.711 kb on - strand, within MPMX19_04450 at 817.711 kb on - strand, within MPMX19_04450 at 817.716 kb on + strand, within MPMX19_04450 at 817.716 kb on + strand, within MPMX19_04450 at 817.716 kb on + strand, within MPMX19_04450 at 817.716 kb on + strand, within MPMX19_04450 at 817.716 kb on + strand, within MPMX19_04450 at 817.716 kb on + strand, within MPMX19_04450 at 817.716 kb on + strand, within MPMX19_04450 at 817.716 kb on + strand, within MPMX19_04450 at 817.716 kb on + strand, within MPMX19_04450 at 817.717 kb on - strand, within MPMX19_04450 at 817.717 kb on - strand, within MPMX19_04450 at 817.722 kb on + strand, within MPMX19_04450 at 817.722 kb on + strand, within MPMX19_04450 at 817.722 kb on + strand, within MPMX19_04450 at 817.722 kb on + strand, within MPMX19_04450 at 817.723 kb on - strand, within MPMX19_04450 at 817.830 kb on + strand, within MPMX19_04450 at 817.830 kb on + strand, within MPMX19_04450 at 817.830 kb on + strand, within MPMX19_04450 at 817.830 kb on + strand, within MPMX19_04450 at 817.830 kb on + strand, within MPMX19_04450 at 817.830 kb on + strand, within MPMX19_04450 at 817.830 kb on + strand, within MPMX19_04450 at 817.831 kb on - strand, within MPMX19_04450 at 817.831 kb on - strand, within MPMX19_04450 at 817.831 kb on - strand, within MPMX19_04450 at 817.831 kb on - strand, within MPMX19_04450 at 817.831 kb on - strand, within MPMX19_04450 at 817.831 kb on - strand, within MPMX19_04450 at 817.831 kb on - strand, within MPMX19_04450 at 817.998 kb on + strand at 817.999 kb on - strand at 817.999 kb on - strand at 818.022 kb on + strand at 818.022 kb on + strand at 818.022 kb on + strand at 818.022 kb on + strand at 818.022 kb on + strand at 818.022 kb on + strand at 818.022 kb on + strand at 818.022 kb on + strand at 818.023 kb on - strand at 818.023 kb on - strand at 818.023 kb on - strand at 818.023 kb on - strand at 818.023 kb on - strand at 818.023 kb on - strand at 818.023 kb on - strand at 818.023 kb on - strand at 818.023 kb on - strand at 818.250 kb on + strand at 818.250 kb on + strand at 818.250 kb on + strand at 818.251 kb on - strand at 818.251 kb on - strand at 818.287 kb on + strand at 818.287 kb on + strand at 818.287 kb on + strand at 818.371 kb on + strand, within MPMX19_04451 at 818.371 kb on + strand, within MPMX19_04451 at 818.371 kb on + strand, within MPMX19_04451 at 818.371 kb on + strand, within MPMX19_04451 at 818.372 kb on - strand, within MPMX19_04451 at 818.570 kb on - strand, within MPMX19_04451 at 818.570 kb on - strand, within MPMX19_04451 at 818.578 kb on + strand, within MPMX19_04451 at 818.578 kb on + strand, within MPMX19_04451 at 818.578 kb on + strand, within MPMX19_04451 at 818.578 kb on + strand, within MPMX19_04451 at 818.578 kb on + strand, within MPMX19_04451 at 818.578 kb on + strand, within MPMX19_04451 at 818.579 kb on - strand, within MPMX19_04451 at 818.579 kb on - strand, within MPMX19_04451 at 818.579 kb on - strand, within MPMX19_04451 at 818.579 kb on - strand, within MPMX19_04451 at 818.579 kb on - strand, within MPMX19_04451 at 818.579 kb on - strand, within MPMX19_04451 at 818.579 kb on - strand, within MPMX19_04451 at 818.654 kb on - strand, within MPMX19_04451 at 818.654 kb on - strand, within MPMX19_04451 at 818.827 kb on + strand, within MPMX19_04451 at 818.828 kb on - strand, within MPMX19_04451 at 818.828 kb on - strand, within MPMX19_04451 at 818.999 kb on + strand at 818.999 kb on + strand at 818.999 kb on + strand at 818.999 kb on + strand at 818.999 kb on + strand at 818.999 kb on + strand at 818.999 kb on + strand at 819.000 kb on - strand at 819.000 kb on - strand at 819.000 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 816,113 + MPMX19_04448 0.87 -0.5 816,113 + MPMX19_04448 0.87 +0.2 816,113 + MPMX19_04448 0.87 -2.2 816,301 - +0.6 816,301 - -0.8 816,670 + MPMX19_04449 0.50 +0.3 816,670 + MPMX19_04449 0.50 -1.3 816,670 + MPMX19_04449 0.50 -1.6 816,671 - MPMX19_04449 0.50 -0.8 816,671 - MPMX19_04449 0.50 -1.4 817,068 + -0.5 817,068 + -0.9 817,068 + +0.2 817,069 - -1.1 817,069 - -0.7 817,560 + MPMX19_04450 0.53 +1.3 817,560 + MPMX19_04450 0.53 -1.3 817,560 + MPMX19_04450 0.53 -1.5 817,561 - MPMX19_04450 0.54 -1.6 817,561 - MPMX19_04450 0.54 -0.2 817,561 - MPMX19_04450 0.54 -0.6 817,561 - MPMX19_04450 0.54 -1.0 817,561 - MPMX19_04450 0.54 -0.4 817,561 - MPMX19_04450 0.54 -1.5 817,561 - MPMX19_04450 0.54 -0.4 817,561 - MPMX19_04450 0.54 -0.3 817,561 - MPMX19_04450 0.54 -0.7 817,561 - MPMX19_04450 0.54 +0.2 817,605 + MPMX19_04450 0.58 -1.6 817,605 + MPMX19_04450 0.58 -0.9 817,710 + MPMX19_04450 0.68 +0.2 817,711 - MPMX19_04450 0.68 -0.4 817,711 - MPMX19_04450 0.68 -0.9 817,711 - MPMX19_04450 0.68 -0.4 817,711 - MPMX19_04450 0.68 -1.0 817,716 + MPMX19_04450 0.69 +0.7 817,716 + MPMX19_04450 0.69 -1.2 817,716 + MPMX19_04450 0.69 -1.1 817,716 + MPMX19_04450 0.69 -0.8 817,716 + MPMX19_04450 0.69 -0.6 817,716 + MPMX19_04450 0.69 -1.8 817,716 + MPMX19_04450 0.69 -1.1 817,716 + MPMX19_04450 0.69 -0.1 817,716 + MPMX19_04450 0.69 +0.4 817,717 - MPMX19_04450 0.69 +0.1 817,717 - MPMX19_04450 0.69 -0.3 817,722 + MPMX19_04450 0.69 -0.6 817,722 + MPMX19_04450 0.69 -2.3 817,722 + MPMX19_04450 0.69 -1.1 817,722 + MPMX19_04450 0.69 -1.8 817,723 - MPMX19_04450 0.69 -0.3 817,830 + MPMX19_04450 0.80 -1.7 817,830 + MPMX19_04450 0.80 -1.2 817,830 + MPMX19_04450 0.80 -2.1 817,830 + MPMX19_04450 0.80 +1.0 817,830 + MPMX19_04450 0.80 -1.4 817,830 + MPMX19_04450 0.80 +0.0 817,830 + MPMX19_04450 0.80 -0.3 817,831 - MPMX19_04450 0.80 -0.6 817,831 - MPMX19_04450 0.80 -1.2 817,831 - MPMX19_04450 0.80 +0.6 817,831 - MPMX19_04450 0.80 -0.8 817,831 - MPMX19_04450 0.80 +0.2 817,831 - MPMX19_04450 0.80 -0.6 817,831 - MPMX19_04450 0.80 -1.1 817,998 + -1.2 817,999 - -0.7 817,999 - -0.8 818,022 + -0.5 818,022 + -1.3 818,022 + -0.1 818,022 + -0.7 818,022 + +0.4 818,022 + -0.4 818,022 + -0.6 818,022 + -0.1 818,023 - -0.4 818,023 - +0.5 818,023 - -1.3 818,023 - -0.3 818,023 - -1.9 818,023 - +0.4 818,023 - -0.5 818,023 - +0.2 818,023 - +0.7 818,250 + +0.4 818,250 + -0.2 818,250 + +2.2 818,251 - -0.8 818,251 - -0.2 818,287 + +1.5 818,287 + +0.4 818,287 + -0.3 818,371 + MPMX19_04451 0.14 +0.3 818,371 + MPMX19_04451 0.14 +0.5 818,371 + MPMX19_04451 0.14 -0.3 818,371 + MPMX19_04451 0.14 -0.0 818,372 - MPMX19_04451 0.14 +1.7 818,570 - MPMX19_04451 0.41 -1.0 818,570 - MPMX19_04451 0.41 +0.6 818,578 + MPMX19_04451 0.42 -1.1 818,578 + MPMX19_04451 0.42 -1.4 818,578 + MPMX19_04451 0.42 -0.1 818,578 + MPMX19_04451 0.42 -2.3 818,578 + MPMX19_04451 0.42 -3.0 818,578 + MPMX19_04451 0.42 +0.2 818,579 - MPMX19_04451 0.42 +0.2 818,579 - MPMX19_04451 0.42 +1.3 818,579 - MPMX19_04451 0.42 -0.4 818,579 - MPMX19_04451 0.42 +1.7 818,579 - MPMX19_04451 0.42 -0.3 818,579 - MPMX19_04451 0.42 -0.8 818,579 - MPMX19_04451 0.42 -0.8 818,654 - MPMX19_04451 0.52 -0.4 818,654 - MPMX19_04451 0.52 +0.6 818,827 + MPMX19_04451 0.76 +0.9 818,828 - MPMX19_04451 0.76 +1.7 818,828 - MPMX19_04451 0.76 -0.9 818,999 + +0.4 818,999 + -1.1 818,999 + -2.0 818,999 + -0.1 818,999 + +0.0 818,999 + -0.1 818,999 + -1.3 819,000 - +1.2 819,000 - +0.4 819,000 - -1.1
Or see this region's nucleotide sequence