Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04432

Experiment: NL-CCM, start OD=0.1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_04431 and MPMX19_04432 are separated by 18 nucleotidesMPMX19_04432 and MPMX19_04433 are separated by 424 nucleotides MPMX19_04431: MPMX19_04431 - hypothetical protein, at 794,959 to 796,437 _04431 MPMX19_04432: MPMX19_04432 - Quinone oxidoreductase 1, at 796,456 to 797,454 _04432 MPMX19_04433: MPMX19_04433 - Transcriptional repressor IclR, at 797,879 to 798,796 _04433 Position (kb) 796 797 798Strain fitness (log2 ratio) -3 -2 -1 0 1at 795.532 kb on + strand, within MPMX19_04431at 795.532 kb on + strand, within MPMX19_04431at 795.533 kb on - strand, within MPMX19_04431at 795.533 kb on - strand, within MPMX19_04431at 795.721 kb on + strand, within MPMX19_04431at 795.721 kb on + strand, within MPMX19_04431at 795.721 kb on + strand, within MPMX19_04431at 795.721 kb on + strand, within MPMX19_04431at 795.721 kb on + strand, within MPMX19_04431at 795.721 kb on + strand, within MPMX19_04431at 795.721 kb on + strand, within MPMX19_04431at 795.721 kb on + strand, within MPMX19_04431at 795.721 kb on + strand, within MPMX19_04431at 795.721 kb on + strand, within MPMX19_04431at 795.721 kb on + strand, within MPMX19_04431at 795.721 kb on + strand, within MPMX19_04431at 795.721 kb on + strand, within MPMX19_04431at 795.722 kb on - strand, within MPMX19_04431at 795.722 kb on - strand, within MPMX19_04431at 795.722 kb on - strand, within MPMX19_04431at 795.722 kb on - strand, within MPMX19_04431at 795.722 kb on - strand, within MPMX19_04431at 795.722 kb on - strand, within MPMX19_04431at 795.722 kb on - strand, within MPMX19_04431at 795.722 kb on - strand, within MPMX19_04431at 795.722 kb on - strand, within MPMX19_04431at 795.805 kb on + strand, within MPMX19_04431at 795.805 kb on + strand, within MPMX19_04431at 795.805 kb on + strand, within MPMX19_04431at 795.805 kb on + strand, within MPMX19_04431at 795.805 kb on + strand, within MPMX19_04431at 795.805 kb on + strand, within MPMX19_04431at 795.805 kb on + strand, within MPMX19_04431at 795.805 kb on + strand, within MPMX19_04431at 795.805 kb on + strand, within MPMX19_04431at 795.805 kb on + strand, within MPMX19_04431at 795.805 kb on + strand, within MPMX19_04431at 795.805 kb on + strand, within MPMX19_04431at 795.805 kb on + strand, within MPMX19_04431at 795.805 kb on + strand, within MPMX19_04431at 795.805 kb on + strand, within MPMX19_04431at 795.805 kb on + strand, within MPMX19_04431at 795.805 kb on + strand, within MPMX19_04431at 795.805 kb on + strand, within MPMX19_04431at 795.805 kb on + strand, within MPMX19_04431at 795.805 kb on + strand, within MPMX19_04431at 795.805 kb on + strand, within MPMX19_04431at 795.806 kb on - strand, within MPMX19_04431at 795.806 kb on - strand, within MPMX19_04431at 795.806 kb on - strand, within MPMX19_04431at 795.806 kb on - strand, within MPMX19_04431at 795.806 kb on - strand, within MPMX19_04431at 795.806 kb on - strand, within MPMX19_04431at 795.806 kb on - strand, within MPMX19_04431at 795.806 kb on - strand, within MPMX19_04431at 795.806 kb on - strand, within MPMX19_04431at 795.806 kb on - strand, within MPMX19_04431at 795.806 kb on - strand, within MPMX19_04431at 795.806 kb on - strand, within MPMX19_04431at 795.806 kb on - strand, within MPMX19_04431at 795.806 kb on - strand, within MPMX19_04431at 795.806 kb on - strand, within MPMX19_04431at 795.806 kb on - strand, within MPMX19_04431at 796.106 kb on - strand, within MPMX19_04431at 796.106 kb on - strand, within MPMX19_04431at 796.294 kb on + strandat 796.294 kb on + strandat 796.294 kb on + strandat 796.294 kb on + strandat 796.294 kb on + strandat 796.294 kb on + strandat 796.294 kb on + strandat 796.294 kb on + strandat 796.295 kb on - strandat 796.295 kb on - strandat 796.295 kb on - strandat 796.295 kb on - strandat 796.295 kb on - strandat 796.295 kb on - strandat 796.295 kb on - strandat 796.295 kb on - strandat 796.295 kb on - strandat 796.625 kb on + strand, within MPMX19_04432at 796.625 kb on + strand, within MPMX19_04432at 796.625 kb on + strand, within MPMX19_04432at 796.625 kb on + strand, within MPMX19_04432at 796.625 kb on + strand, within MPMX19_04432at 796.626 kb on - strand, within MPMX19_04432at 796.626 kb on - strand, within MPMX19_04432at 796.626 kb on - strand, within MPMX19_04432at 796.626 kb on - strand, within MPMX19_04432at 796.626 kb on - strand, within MPMX19_04432at 796.626 kb on - strand, within MPMX19_04432at 796.626 kb on - strand, within MPMX19_04432at 796.736 kb on + strand, within MPMX19_04432at 796.736 kb on + strand, within MPMX19_04432at 796.737 kb on - strand, within MPMX19_04432at 796.737 kb on - strand, within MPMX19_04432at 796.737 kb on - strand, within MPMX19_04432at 796.737 kb on - strand, within MPMX19_04432at 796.737 kb on - strand, within MPMX19_04432at 796.778 kb on + strand, within MPMX19_04432at 796.778 kb on + strand, within MPMX19_04432at 796.778 kb on + strand, within MPMX19_04432at 796.778 kb on + strand, within MPMX19_04432at 796.778 kb on + strand, within MPMX19_04432at 796.778 kb on + strand, within MPMX19_04432at 796.779 kb on - strand, within MPMX19_04432at 796.779 kb on - strand, within MPMX19_04432at 796.779 kb on - strand, within MPMX19_04432at 796.779 kb on - strand, within MPMX19_04432at 796.865 kb on + strand, within MPMX19_04432at 796.865 kb on + strand, within MPMX19_04432at 796.865 kb on + strand, within MPMX19_04432at 796.865 kb on + strand, within MPMX19_04432at 796.866 kb on - strand, within MPMX19_04432at 797.156 kb on + strand, within MPMX19_04432at 797.157 kb on - strand, within MPMX19_04432at 797.285 kb on + strand, within MPMX19_04432at 797.285 kb on + strand, within MPMX19_04432at 797.285 kb on + strand, within MPMX19_04432at 797.285 kb on + strand, within MPMX19_04432at 797.285 kb on + strand, within MPMX19_04432at 797.285 kb on + strand, within MPMX19_04432at 797.286 kb on - strand, within MPMX19_04432at 797.286 kb on - strand, within MPMX19_04432at 797.286 kb on - strand, within MPMX19_04432at 797.286 kb on - strand, within MPMX19_04432at 797.286 kb on - strand, within MPMX19_04432at 797.286 kb on - strand, within MPMX19_04432at 797.474 kb on + strandat 797.474 kb on + strandat 797.475 kb on - strandat 798.123 kb on + strand, within MPMX19_04433at 798.123 kb on + strand, within MPMX19_04433at 798.124 kb on - strand, within MPMX19_04433at 798.124 kb on - strand, within MPMX19_04433at 798.315 kb on + strand, within MPMX19_04433at 798.315 kb on + strand, within MPMX19_04433at 798.315 kb on + strand, within MPMX19_04433at 798.315 kb on + strand, within MPMX19_04433at 798.315 kb on + strand, within MPMX19_04433at 798.315 kb on + strand, within MPMX19_04433at 798.315 kb on + strand, within MPMX19_04433at 798.315 kb on + strand, within MPMX19_04433at 798.316 kb on - strand, within MPMX19_04433at 798.316 kb on - strand, within MPMX19_04433at 798.316 kb on - strand, within MPMX19_04433at 798.316 kb on - strand, within MPMX19_04433at 798.316 kb on - strand, within MPMX19_04433at 798.316 kb on - strand, within MPMX19_04433at 798.316 kb on - strand, within MPMX19_04433at 798.316 kb on - strand, within MPMX19_04433at 798.316 kb on - strand, within MPMX19_04433at 798.444 kb on + strand, within MPMX19_04433at 798.444 kb on + strand, within MPMX19_04433at 798.444 kb on + strand, within MPMX19_04433at 798.444 kb on + strand, within MPMX19_04433at 798.444 kb on + strand, within MPMX19_04433at 798.444 kb on + strand, within MPMX19_04433at 798.444 kb on + strand, within MPMX19_04433at 798.444 kb on + strand, within MPMX19_04433at 798.444 kb on + strand, within MPMX19_04433at 798.444 kb on + strand, within MPMX19_04433at 798.445 kb on - strand, within MPMX19_04433at 798.445 kb on - strand, within MPMX19_04433at 798.445 kb on - strand, within MPMX19_04433at 798.445 kb on - strand, within MPMX19_04433at 798.445 kb on - strand, within MPMX19_04433at 798.445 kb on - strand, within MPMX19_04433at 798.445 kb on - strand, within MPMX19_04433at 798.445 kb on - strand, within MPMX19_04433at 798.445 kb on - strand, within MPMX19_04433at 798.445 kb on - strand, within MPMX19_04433at 798.445 kb on - strand, within MPMX19_04433at 798.445 kb on - strand, within MPMX19_04433

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
remove
795,532 + MPMX19_04431 0.39 +0.5
795,532 + MPMX19_04431 0.39 -0.6
795,533 - MPMX19_04431 0.39 +0.4
795,533 - MPMX19_04431 0.39 -0.1
795,721 + MPMX19_04431 0.52 -0.6
795,721 + MPMX19_04431 0.52 -1.7
795,721 + MPMX19_04431 0.52 -0.6
795,721 + MPMX19_04431 0.52 -0.5
795,721 + MPMX19_04431 0.52 -0.4
795,721 + MPMX19_04431 0.52 -0.4
795,721 + MPMX19_04431 0.52 -0.6
795,721 + MPMX19_04431 0.52 -0.8
795,721 + MPMX19_04431 0.52 -0.4
795,721 + MPMX19_04431 0.52 -0.3
795,721 + MPMX19_04431 0.52 +0.3
795,721 + MPMX19_04431 0.52 -0.3
795,721 + MPMX19_04431 0.52 -0.1
795,722 - MPMX19_04431 0.52 -1.0
795,722 - MPMX19_04431 0.52 -1.0
795,722 - MPMX19_04431 0.52 -2.3
795,722 - MPMX19_04431 0.52 +0.2
795,722 - MPMX19_04431 0.52 +0.2
795,722 - MPMX19_04431 0.52 -1.0
795,722 - MPMX19_04431 0.52 -0.1
795,722 - MPMX19_04431 0.52 +0.7
795,722 - MPMX19_04431 0.52 -1.1
795,805 + MPMX19_04431 0.57 -1.3
795,805 + MPMX19_04431 0.57 +0.3
795,805 + MPMX19_04431 0.57 -0.6
795,805 + MPMX19_04431 0.57 +0.3
795,805 + MPMX19_04431 0.57 -1.2
795,805 + MPMX19_04431 0.57 +0.2
795,805 + MPMX19_04431 0.57 -0.9
795,805 + MPMX19_04431 0.57 -0.8
795,805 + MPMX19_04431 0.57 -1.4
795,805 + MPMX19_04431 0.57 +0.8
795,805 + MPMX19_04431 0.57 -2.6
795,805 + MPMX19_04431 0.57 +0.4
795,805 + MPMX19_04431 0.57 -0.3
795,805 + MPMX19_04431 0.57 +0.0
795,805 + MPMX19_04431 0.57 -1.5
795,805 + MPMX19_04431 0.57 +0.7
795,805 + MPMX19_04431 0.57 +0.9
795,805 + MPMX19_04431 0.57 -0.5
795,805 + MPMX19_04431 0.57 -1.1
795,805 + MPMX19_04431 0.57 -0.3
795,805 + MPMX19_04431 0.57 -0.8
795,806 - MPMX19_04431 0.57 -0.1
795,806 - MPMX19_04431 0.57 -1.1
795,806 - MPMX19_04431 0.57 +1.3
795,806 - MPMX19_04431 0.57 +0.2
795,806 - MPMX19_04431 0.57 +0.6
795,806 - MPMX19_04431 0.57 +0.2
795,806 - MPMX19_04431 0.57 +0.2
795,806 - MPMX19_04431 0.57 +0.5
795,806 - MPMX19_04431 0.57 -1.3
795,806 - MPMX19_04431 0.57 +0.3
795,806 - MPMX19_04431 0.57 +0.0
795,806 - MPMX19_04431 0.57 -0.3
795,806 - MPMX19_04431 0.57 -0.7
795,806 - MPMX19_04431 0.57 -1.5
795,806 - MPMX19_04431 0.57 -0.1
795,806 - MPMX19_04431 0.57 -1.1
796,106 - MPMX19_04431 0.78 -2.0
796,106 - MPMX19_04431 0.78 +1.0
796,294 + -0.1
796,294 + +0.7
796,294 + -0.5
796,294 + +0.7
796,294 + +0.7
796,294 + -1.1
796,294 + -0.4
796,294 + +0.7
796,295 - -0.7
796,295 - -1.1
796,295 - -1.8
796,295 - -0.8
796,295 - +0.3
796,295 - +0.4
796,295 - -0.6
796,295 - -1.0
796,295 - -1.1
796,625 + MPMX19_04432 0.17 +1.1
796,625 + MPMX19_04432 0.17 -2.8
796,625 + MPMX19_04432 0.17 -0.7
796,625 + MPMX19_04432 0.17 -0.5
796,625 + MPMX19_04432 0.17 -1.1
796,626 - MPMX19_04432 0.17 -0.8
796,626 - MPMX19_04432 0.17 -1.2
796,626 - MPMX19_04432 0.17 +0.4
796,626 - MPMX19_04432 0.17 -0.5
796,626 - MPMX19_04432 0.17 -0.4
796,626 - MPMX19_04432 0.17 -1.6
796,626 - MPMX19_04432 0.17 +0.0
796,736 + MPMX19_04432 0.28 +0.5
796,736 + MPMX19_04432 0.28 +0.3
796,737 - MPMX19_04432 0.28 -1.2
796,737 - MPMX19_04432 0.28 -0.7
796,737 - MPMX19_04432 0.28 -1.2
796,737 - MPMX19_04432 0.28 -0.3
796,737 - MPMX19_04432 0.28 -0.2
796,778 + MPMX19_04432 0.32 -0.1
796,778 + MPMX19_04432 0.32 -0.7
796,778 + MPMX19_04432 0.32 -0.6
796,778 + MPMX19_04432 0.32 -0.6
796,778 + MPMX19_04432 0.32 -0.1
796,778 + MPMX19_04432 0.32 +0.2
796,779 - MPMX19_04432 0.32 -0.7
796,779 - MPMX19_04432 0.32 -0.2
796,779 - MPMX19_04432 0.32 -1.7
796,779 - MPMX19_04432 0.32 +0.6
796,865 + MPMX19_04432 0.41 -0.3
796,865 + MPMX19_04432 0.41 -1.2
796,865 + MPMX19_04432 0.41 -0.7
796,865 + MPMX19_04432 0.41 -1.3
796,866 - MPMX19_04432 0.41 -0.3
797,156 + MPMX19_04432 0.70 -0.2
797,157 - MPMX19_04432 0.70 -2.1
797,285 + MPMX19_04432 0.83 +0.3
797,285 + MPMX19_04432 0.83 -0.8
797,285 + MPMX19_04432 0.83 -0.0
797,285 + MPMX19_04432 0.83 -1.3
797,285 + MPMX19_04432 0.83 -1.2
797,285 + MPMX19_04432 0.83 -0.1
797,286 - MPMX19_04432 0.83 -0.8
797,286 - MPMX19_04432 0.83 -2.2
797,286 - MPMX19_04432 0.83 +0.4
797,286 - MPMX19_04432 0.83 -1.0
797,286 - MPMX19_04432 0.83 +0.0
797,286 - MPMX19_04432 0.83 -0.8
797,474 + -0.9
797,474 + +1.0
797,475 - -2.0
798,123 + MPMX19_04433 0.27 -0.8
798,123 + MPMX19_04433 0.27 +0.6
798,124 - MPMX19_04433 0.27 +0.2
798,124 - MPMX19_04433 0.27 -1.3
798,315 + MPMX19_04433 0.47 -1.0
798,315 + MPMX19_04433 0.47 -1.0
798,315 + MPMX19_04433 0.47 -0.4
798,315 + MPMX19_04433 0.47 -0.3
798,315 + MPMX19_04433 0.47 +0.4
798,315 + MPMX19_04433 0.47 +0.2
798,315 + MPMX19_04433 0.47 -0.7
798,315 + MPMX19_04433 0.47 -1.1
798,316 - MPMX19_04433 0.48 +0.0
798,316 - MPMX19_04433 0.48 +0.7
798,316 - MPMX19_04433 0.48 -1.0
798,316 - MPMX19_04433 0.48 -0.8
798,316 - MPMX19_04433 0.48 -0.6
798,316 - MPMX19_04433 0.48 -0.4
798,316 - MPMX19_04433 0.48 -0.8
798,316 - MPMX19_04433 0.48 -0.3
798,316 - MPMX19_04433 0.48 +0.2
798,444 + MPMX19_04433 0.62 -0.7
798,444 + MPMX19_04433 0.62 -2.3
798,444 + MPMX19_04433 0.62 -0.4
798,444 + MPMX19_04433 0.62 -1.3
798,444 + MPMX19_04433 0.62 -2.8
798,444 + MPMX19_04433 0.62 -1.2
798,444 + MPMX19_04433 0.62 -0.3
798,444 + MPMX19_04433 0.62 +0.2
798,444 + MPMX19_04433 0.62 -0.8
798,444 + MPMX19_04433 0.62 +0.2
798,445 - MPMX19_04433 0.62 -0.9
798,445 - MPMX19_04433 0.62 -1.4
798,445 - MPMX19_04433 0.62 -1.3
798,445 - MPMX19_04433 0.62 -0.4
798,445 - MPMX19_04433 0.62 -0.0
798,445 - MPMX19_04433 0.62 -0.8
798,445 - MPMX19_04433 0.62 -0.3
798,445 - MPMX19_04433 0.62 -1.1
798,445 - MPMX19_04433 0.62 -0.8
798,445 - MPMX19_04433 0.62 -1.1
798,445 - MPMX19_04433 0.62 -0.9
798,445 - MPMX19_04433 0.62 -0.4

Or see this region's nucleotide sequence