Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04339 and MPMX19_04340 are separated by 98 nucleotides MPMX19_04340 and MPMX19_04341 are separated by 294 nucleotides MPMX19_04341 and MPMX19_04342 are separated by 171 nucleotides MPMX19_04342 and MPMX19_04343 overlap by 44 nucleotides
MPMX19_04339: MPMX19_04339 - Bifunctional folate synthesis protein, at 703,496 to 704,029
_04339
MPMX19_04340: MPMX19_04340 - hypothetical protein, at 704,128 to 704,535
_04340
MPMX19_04341: MPMX19_04341 - hypothetical protein, at 704,830 to 704,988
_04341
MPMX19_04342: MPMX19_04342 - Chemotaxis protein CheY, at 705,160 to 705,597
_04342
MPMX19_04343: MPMX19_04343 - Efflux pump membrane transporter BepE, at 705,554 to 708,682
_04343
Position (kb) 704
705 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 704.073 kb on + strand at 704.073 kb on + strand at 704.073 kb on + strand at 704.073 kb on + strand at 704.073 kb on + strand at 704.073 kb on + strand at 704.073 kb on + strand at 704.073 kb on + strand at 704.073 kb on + strand at 704.073 kb on + strand at 704.073 kb on + strand at 704.073 kb on + strand at 704.073 kb on + strand at 704.073 kb on + strand at 704.075 kb on + strand at 704.075 kb on + strand at 704.075 kb on + strand at 704.075 kb on + strand at 704.075 kb on + strand at 704.075 kb on + strand at 704.075 kb on + strand at 704.075 kb on + strand at 704.075 kb on + strand at 704.075 kb on + strand at 704.075 kb on + strand at 704.075 kb on + strand at 704.075 kb on + strand at 704.075 kb on + strand at 704.075 kb on + strand at 704.075 kb on + strand at 704.075 kb on + strand at 704.188 kb on + strand, within MPMX19_04340 at 704.562 kb on + strand at 704.563 kb on - strand at 704.563 kb on - strand at 704.566 kb on - strand at 704.574 kb on - strand at 704.574 kb on - strand at 704.583 kb on + strand at 704.583 kb on + strand at 704.584 kb on - strand at 704.584 kb on - strand at 704.584 kb on - strand at 704.584 kb on - strand at 704.585 kb on + strand at 704.585 kb on + strand at 704.586 kb on - strand at 704.616 kb on + strand at 704.616 kb on + strand at 704.617 kb on - strand at 704.617 kb on - strand at 704.617 kb on - strand at 704.633 kb on + strand at 704.633 kb on + strand at 704.633 kb on + strand at 704.633 kb on + strand at 704.634 kb on - strand at 704.634 kb on - strand at 704.644 kb on + strand at 704.681 kb on + strand at 704.681 kb on + strand at 704.681 kb on + strand at 704.681 kb on + strand at 704.682 kb on - strand at 704.682 kb on - strand at 704.683 kb on + strand at 704.683 kb on + strand at 704.683 kb on + strand at 704.737 kb on + strand at 704.737 kb on + strand at 704.737 kb on + strand at 704.737 kb on + strand at 704.737 kb on + strand at 704.737 kb on + strand at 704.738 kb on - strand at 704.738 kb on - strand at 704.816 kb on + strand at 704.816 kb on + strand at 704.816 kb on + strand at 704.816 kb on + strand at 704.817 kb on - strand at 704.817 kb on - strand at 704.817 kb on - strand at 704.817 kb on - strand at 704.817 kb on - strand at 704.817 kb on - strand at 704.817 kb on - strand at 704.817 kb on - strand at 704.817 kb on - strand at 704.817 kb on - strand at 704.817 kb on - strand at 704.892 kb on + strand, within MPMX19_04341 at 704.892 kb on + strand, within MPMX19_04341 at 704.892 kb on + strand, within MPMX19_04341 at 704.893 kb on - strand, within MPMX19_04341 at 704.963 kb on + strand, within MPMX19_04341 at 704.963 kb on + strand, within MPMX19_04341 at 704.963 kb on + strand, within MPMX19_04341 at 704.963 kb on + strand, within MPMX19_04341 at 704.963 kb on + strand, within MPMX19_04341 at 704.964 kb on - strand, within MPMX19_04341 at 704.964 kb on - strand, within MPMX19_04341 at 704.964 kb on - strand, within MPMX19_04341 at 705.030 kb on + strand at 705.030 kb on + strand at 705.030 kb on + strand at 705.030 kb on + strand at 705.030 kb on + strand at 705.030 kb on + strand at 705.030 kb on + strand at 705.030 kb on + strand at 705.030 kb on + strand at 705.030 kb on + strand at 705.030 kb on + strand at 705.030 kb on + strand at 705.031 kb on - strand at 705.031 kb on - strand at 705.031 kb on - strand at 705.031 kb on - strand at 705.031 kb on - strand at 705.031 kb on - strand at 705.031 kb on - strand at 705.031 kb on - strand at 705.031 kb on - strand at 705.031 kb on - strand at 705.031 kb on - strand at 705.031 kb on - strand at 705.031 kb on - strand at 705.055 kb on + strand at 705.055 kb on + strand at 705.055 kb on + strand at 705.055 kb on + strand at 705.055 kb on + strand at 705.055 kb on + strand at 705.055 kb on + strand at 705.055 kb on + strand at 705.055 kb on + strand at 705.055 kb on + strand at 705.055 kb on + strand at 705.055 kb on + strand at 705.055 kb on + strand at 705.055 kb on + strand at 705.055 kb on + strand at 705.055 kb on + strand at 705.056 kb on - strand at 705.056 kb on - strand at 705.056 kb on - strand at 705.056 kb on - strand at 705.056 kb on - strand at 705.056 kb on - strand at 705.056 kb on - strand at 705.056 kb on - strand at 705.056 kb on - strand at 705.056 kb on - strand at 705.056 kb on - strand at 705.056 kb on - strand at 705.056 kb on - strand at 705.056 kb on - strand at 705.056 kb on - strand at 705.056 kb on - strand at 705.056 kb on - strand at 705.067 kb on - strand at 705.169 kb on + strand at 705.169 kb on + strand at 705.169 kb on + strand at 705.169 kb on + strand at 705.170 kb on - strand at 705.170 kb on - strand at 705.170 kb on - strand at 705.660 kb on + strand at 705.660 kb on + strand at 705.660 kb on + strand at 705.660 kb on + strand at 705.660 kb on + strand at 705.660 kb on + strand at 705.660 kb on + strand at 705.660 kb on + strand at 705.660 kb on + strand at 705.660 kb on + strand at 705.660 kb on + strand at 705.660 kb on + strand at 705.660 kb on + strand at 705.660 kb on + strand at 705.660 kb on + strand at 705.660 kb on + strand at 705.660 kb on + strand at 705.660 kb on + strand at 705.660 kb on + strand at 705.660 kb on + strand at 705.661 kb on - strand at 705.661 kb on - strand at 705.661 kb on - strand at 705.661 kb on - strand at 705.661 kb on - strand at 705.661 kb on - strand at 705.661 kb on - strand at 705.661 kb on - strand at 705.661 kb on - strand at 705.661 kb on - strand at 705.661 kb on - strand at 705.661 kb on - strand at 705.661 kb on - strand at 705.661 kb on - strand at 705.661 kb on - strand at 705.661 kb on - strand at 705.661 kb on - strand at 705.661 kb on - strand at 705.661 kb on - strand at 705.661 kb on - strand at 705.661 kb on - strand at 705.661 kb on - strand at 705.661 kb on - strand at 705.661 kb on - strand at 705.666 kb on + strand at 705.666 kb on + strand at 705.666 kb on + strand at 705.666 kb on + strand at 705.666 kb on + strand at 705.666 kb on + strand at 705.666 kb on + strand at 705.667 kb on - strand at 705.667 kb on - strand at 705.771 kb on + strand at 705.771 kb on + strand at 705.771 kb on + strand at 705.771 kb on + strand at 705.771 kb on + strand at 705.771 kb on + strand at 705.771 kb on + strand at 705.771 kb on + strand at 705.771 kb on + strand at 705.771 kb on + strand at 705.771 kb on + strand at 705.771 kb on + strand at 705.772 kb on - strand at 705.772 kb on - strand at 705.772 kb on - strand at 705.772 kb on - strand at 705.772 kb on - strand at 705.772 kb on - strand at 705.963 kb on + strand, within MPMX19_04343 at 705.963 kb on + strand, within MPMX19_04343 at 705.963 kb on + strand, within MPMX19_04343 at 705.963 kb on + strand, within MPMX19_04343 at 705.963 kb on + strand, within MPMX19_04343 at 705.964 kb on - strand, within MPMX19_04343 at 705.964 kb on - strand, within MPMX19_04343 at 705.964 kb on - strand, within MPMX19_04343 at 705.964 kb on - strand, within MPMX19_04343 at 705.964 kb on - strand, within MPMX19_04343 at 705.964 kb on - strand, within MPMX19_04343 at 705.964 kb on - strand, within MPMX19_04343 at 705.964 kb on - strand, within MPMX19_04343
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 704,073 + -0.6 704,073 + -0.0 704,073 + -1.6 704,073 + -1.8 704,073 + +0.0 704,073 + +0.7 704,073 + -1.4 704,073 + -0.4 704,073 + -0.3 704,073 + +0.5 704,073 + -0.7 704,073 + -1.7 704,073 + -0.1 704,073 + +0.7 704,075 + -0.7 704,075 + -0.9 704,075 + -1.6 704,075 + -0.2 704,075 + -1.0 704,075 + +0.2 704,075 + +0.6 704,075 + -0.9 704,075 + -0.5 704,075 + -0.9 704,075 + +1.5 704,075 + -0.1 704,075 + -0.7 704,075 + -2.1 704,075 + -0.9 704,075 + +0.4 704,075 + +0.3 704,188 + MPMX19_04340 0.15 -0.9 704,562 + +0.7 704,563 - -1.6 704,563 - -0.1 704,566 - -1.1 704,574 - -1.1 704,574 - -0.6 704,583 + -0.3 704,583 + +0.9 704,584 - -1.2 704,584 - -1.4 704,584 - -0.6 704,584 - -1.9 704,585 + +1.7 704,585 + -0.2 704,586 - +0.8 704,616 + -0.6 704,616 + -0.0 704,617 - +0.6 704,617 - +0.7 704,617 - -1.6 704,633 + -0.8 704,633 + -0.6 704,633 + -0.1 704,633 + -0.1 704,634 - -1.1 704,634 - -0.5 704,644 + +0.1 704,681 + -1.6 704,681 + -0.3 704,681 + +1.3 704,681 + -1.9 704,682 - -0.1 704,682 - +0.1 704,683 + +0.7 704,683 + -1.8 704,683 + -0.6 704,737 + +1.7 704,737 + -1.4 704,737 + -0.6 704,737 + +0.3 704,737 + -1.2 704,737 + -0.7 704,738 - -1.6 704,738 - -1.4 704,816 + -0.9 704,816 + +0.4 704,816 + +0.9 704,816 + -1.6 704,817 - +0.0 704,817 - +1.4 704,817 - +0.1 704,817 - -1.9 704,817 - -0.6 704,817 - -0.6 704,817 - -1.0 704,817 - -0.3 704,817 - +0.1 704,817 - -0.9 704,817 - -0.4 704,892 + MPMX19_04341 0.39 -0.8 704,892 + MPMX19_04341 0.39 +0.1 704,892 + MPMX19_04341 0.39 +0.5 704,893 - MPMX19_04341 0.40 -0.4 704,963 + MPMX19_04341 0.84 -0.1 704,963 + MPMX19_04341 0.84 -0.6 704,963 + MPMX19_04341 0.84 -0.9 704,963 + MPMX19_04341 0.84 -1.1 704,963 + MPMX19_04341 0.84 -0.6 704,964 - MPMX19_04341 0.84 -0.7 704,964 - MPMX19_04341 0.84 +0.4 704,964 - MPMX19_04341 0.84 -0.8 705,030 + -0.4 705,030 + -2.1 705,030 + -1.6 705,030 + +0.9 705,030 + +1.4 705,030 + -0.1 705,030 + +0.4 705,030 + -0.3 705,030 + -1.3 705,030 + -0.9 705,030 + +0.1 705,030 + -0.1 705,031 - +0.9 705,031 - -0.4 705,031 - -0.4 705,031 - +1.3 705,031 - -0.5 705,031 - -0.3 705,031 - +0.2 705,031 - -0.9 705,031 - -0.4 705,031 - +0.7 705,031 - -1.0 705,031 - -0.5 705,031 - +0.2 705,055 + -0.9 705,055 + -0.7 705,055 + -1.6 705,055 + -3.1 705,055 + -0.9 705,055 + -0.4 705,055 + -0.3 705,055 + -0.5 705,055 + -0.3 705,055 + +0.1 705,055 + +1.0 705,055 + +1.1 705,055 + -1.2 705,055 + +1.1 705,055 + -0.0 705,055 + -1.1 705,056 - -1.0 705,056 - -2.3 705,056 - -0.1 705,056 - +0.4 705,056 - +0.5 705,056 - +0.5 705,056 - -0.9 705,056 - +0.1 705,056 - +0.4 705,056 - +0.7 705,056 - +0.9 705,056 - -1.6 705,056 - -1.3 705,056 - +0.1 705,056 - -0.1 705,056 - -0.5 705,056 - -1.6 705,067 - -1.3 705,169 + -0.0 705,169 + +0.7 705,169 + +0.7 705,169 + -0.1 705,170 - -0.8 705,170 - +0.7 705,170 - -0.3 705,660 + +0.7 705,660 + +0.1 705,660 + +0.6 705,660 + -0.7 705,660 + -0.4 705,660 + -0.3 705,660 + +0.7 705,660 + -0.5 705,660 + +0.8 705,660 + +0.1 705,660 + -0.2 705,660 + -0.7 705,660 + -0.2 705,660 + -0.7 705,660 + +0.8 705,660 + -0.4 705,660 + -0.6 705,660 + -1.4 705,660 + -2.3 705,660 + +0.4 705,661 - +0.2 705,661 - -0.2 705,661 - +1.7 705,661 - -0.2 705,661 - -0.4 705,661 - -0.3 705,661 - +0.7 705,661 - -1.3 705,661 - +0.1 705,661 - +0.6 705,661 - -1.3 705,661 - +0.5 705,661 - -1.6 705,661 - -0.4 705,661 - -1.2 705,661 - -1.2 705,661 - +0.1 705,661 - +1.7 705,661 - -1.9 705,661 - -1.1 705,661 - -0.3 705,661 - -1.1 705,661 - +0.7 705,661 - -0.4 705,666 + -0.4 705,666 + -2.7 705,666 + -1.7 705,666 + +0.7 705,666 + -1.2 705,666 + +0.9 705,666 + +1.1 705,667 - -0.3 705,667 - +0.3 705,771 + -1.3 705,771 + +0.1 705,771 + +0.4 705,771 + -0.4 705,771 + +1.1 705,771 + -0.4 705,771 + +0.1 705,771 + -1.4 705,771 + +0.1 705,771 + +1.7 705,771 + -0.3 705,771 + +0.7 705,772 - -1.1 705,772 - +0.7 705,772 - +0.5 705,772 - -0.1 705,772 - +0.4 705,772 - -0.7 705,963 + MPMX19_04343 0.13 +0.8 705,963 + MPMX19_04343 0.13 +0.5 705,963 + MPMX19_04343 0.13 -0.1 705,963 + MPMX19_04343 0.13 -2.0 705,963 + MPMX19_04343 0.13 -0.9 705,964 - MPMX19_04343 0.13 -0.7 705,964 - MPMX19_04343 0.13 -1.9 705,964 - MPMX19_04343 0.13 -1.4 705,964 - MPMX19_04343 0.13 -1.1 705,964 - MPMX19_04343 0.13 -1.0 705,964 - MPMX19_04343 0.13 -0.2 705,964 - MPMX19_04343 0.13 -0.0 705,964 - MPMX19_04343 0.13 -0.6
Or see this region's nucleotide sequence