Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04332

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04330 and MPMX19_04331 are separated by 36 nucleotidesMPMX19_04331 and MPMX19_04332 are separated by 130 nucleotidesMPMX19_04332 and MPMX19_04333 are separated by 85 nucleotidesMPMX19_04333 and MPMX19_04334 are separated by 288 nucleotides MPMX19_04330: MPMX19_04330 - Iron-sulfur cluster insertion protein ErpA, at 695,131 to 695,487 _04330 MPMX19_04331: MPMX19_04331 - Exodeoxyribonuclease, at 695,524 to 696,297 _04331 MPMX19_04332: MPMX19_04332 - hypothetical protein, at 696,428 to 697,000 _04332 MPMX19_04333: MPMX19_04333 - tRNA-Ser, at 697,086 to 697,175 _04333 MPMX19_04334: MPMX19_04334 - hypothetical protein, at 697,464 to 698,315 _04334 Position (kb) 696 697 698Strain fitness (log2 ratio) -2 -1 0 1 2at 695.677 kb on + strand, within MPMX19_04331at 695.707 kb on + strand, within MPMX19_04331at 695.707 kb on + strand, within MPMX19_04331at 695.707 kb on + strand, within MPMX19_04331at 695.707 kb on + strand, within MPMX19_04331at 695.707 kb on + strand, within MPMX19_04331at 695.707 kb on + strand, within MPMX19_04331at 695.707 kb on + strand, within MPMX19_04331at 695.707 kb on + strand, within MPMX19_04331at 695.707 kb on + strand, within MPMX19_04331at 695.707 kb on + strand, within MPMX19_04331at 695.707 kb on + strand, within MPMX19_04331at 695.707 kb on + strand, within MPMX19_04331at 695.708 kb on - strand, within MPMX19_04331at 695.708 kb on - strand, within MPMX19_04331at 695.708 kb on - strand, within MPMX19_04331at 695.708 kb on - strand, within MPMX19_04331at 695.708 kb on - strand, within MPMX19_04331at 695.708 kb on - strand, within MPMX19_04331at 695.708 kb on - strand, within MPMX19_04331at 695.708 kb on - strand, within MPMX19_04331at 695.708 kb on - strand, within MPMX19_04331at 695.794 kb on + strand, within MPMX19_04331at 695.794 kb on + strand, within MPMX19_04331at 695.794 kb on + strand, within MPMX19_04331at 695.794 kb on + strand, within MPMX19_04331at 695.794 kb on + strand, within MPMX19_04331at 695.795 kb on - strand, within MPMX19_04331at 695.795 kb on - strand, within MPMX19_04331at 695.795 kb on - strand, within MPMX19_04331at 695.836 kb on + strand, within MPMX19_04331at 695.836 kb on + strand, within MPMX19_04331at 695.836 kb on + strand, within MPMX19_04331at 695.836 kb on + strand, within MPMX19_04331at 695.836 kb on + strand, within MPMX19_04331at 695.836 kb on + strand, within MPMX19_04331at 695.836 kb on + strand, within MPMX19_04331at 695.837 kb on - strand, within MPMX19_04331at 695.837 kb on - strand, within MPMX19_04331at 695.878 kb on + strand, within MPMX19_04331at 695.878 kb on + strand, within MPMX19_04331at 695.878 kb on + strand, within MPMX19_04331at 695.878 kb on + strand, within MPMX19_04331at 695.878 kb on + strand, within MPMX19_04331at 695.879 kb on - strand, within MPMX19_04331at 695.879 kb on - strand, within MPMX19_04331at 695.879 kb on - strand, within MPMX19_04331at 695.879 kb on - strand, within MPMX19_04331at 695.905 kb on + strand, within MPMX19_04331at 695.905 kb on + strand, within MPMX19_04331at 695.905 kb on + strand, within MPMX19_04331at 695.905 kb on + strand, within MPMX19_04331at 695.905 kb on + strand, within MPMX19_04331at 695.905 kb on + strand, within MPMX19_04331at 695.905 kb on + strand, within MPMX19_04331at 695.905 kb on + strand, within MPMX19_04331at 695.906 kb on - strand, within MPMX19_04331at 695.906 kb on - strand, within MPMX19_04331at 695.906 kb on - strand, within MPMX19_04331at 695.906 kb on - strand, within MPMX19_04331at 695.906 kb on - strand, within MPMX19_04331at 695.962 kb on + strand, within MPMX19_04331at 695.962 kb on + strand, within MPMX19_04331at 695.962 kb on + strand, within MPMX19_04331at 695.962 kb on + strand, within MPMX19_04331at 695.962 kb on + strand, within MPMX19_04331at 695.962 kb on + strand, within MPMX19_04331at 695.962 kb on + strand, within MPMX19_04331at 695.962 kb on + strand, within MPMX19_04331at 695.962 kb on + strand, within MPMX19_04331at 695.962 kb on + strand, within MPMX19_04331at 695.962 kb on + strand, within MPMX19_04331at 695.962 kb on + strand, within MPMX19_04331at 695.963 kb on - strand, within MPMX19_04331at 695.963 kb on - strand, within MPMX19_04331at 695.963 kb on - strand, within MPMX19_04331at 695.963 kb on - strand, within MPMX19_04331at 695.963 kb on - strand, within MPMX19_04331at 695.963 kb on - strand, within MPMX19_04331at 695.963 kb on - strand, within MPMX19_04331at 696.085 kb on + strand, within MPMX19_04331at 696.085 kb on + strand, within MPMX19_04331at 696.086 kb on - strand, within MPMX19_04331at 696.115 kb on + strand, within MPMX19_04331at 696.115 kb on + strand, within MPMX19_04331at 696.115 kb on + strand, within MPMX19_04331at 696.115 kb on + strand, within MPMX19_04331at 696.115 kb on + strand, within MPMX19_04331at 696.116 kb on - strand, within MPMX19_04331at 696.116 kb on - strand, within MPMX19_04331at 696.116 kb on - strand, within MPMX19_04331at 696.117 kb on + strand, within MPMX19_04331at 696.117 kb on + strand, within MPMX19_04331at 696.117 kb on + strand, within MPMX19_04331at 696.117 kb on + strand, within MPMX19_04331at 696.117 kb on + strand, within MPMX19_04331at 696.117 kb on + strand, within MPMX19_04331at 696.117 kb on + strand, within MPMX19_04331at 696.117 kb on + strand, within MPMX19_04331at 696.117 kb on + strand, within MPMX19_04331at 696.117 kb on + strand, within MPMX19_04331at 696.117 kb on + strand, within MPMX19_04331at 696.117 kb on + strand, within MPMX19_04331at 696.118 kb on - strand, within MPMX19_04331at 696.118 kb on - strand, within MPMX19_04331at 696.118 kb on - strand, within MPMX19_04331at 696.118 kb on - strand, within MPMX19_04331at 696.118 kb on - strand, within MPMX19_04331at 696.118 kb on - strand, within MPMX19_04331at 696.130 kb on + strand, within MPMX19_04331at 696.334 kb on - strandat 696.362 kb on + strandat 696.362 kb on + strandat 696.362 kb on + strandat 696.362 kb on + strandat 696.363 kb on - strandat 696.363 kb on - strandat 696.363 kb on - strandat 696.363 kb on - strandat 696.418 kb on + strandat 696.419 kb on - strandat 696.419 kb on - strandat 696.419 kb on - strandat 696.419 kb on - strandat 696.722 kb on + strand, within MPMX19_04332at 696.722 kb on + strand, within MPMX19_04332at 696.722 kb on + strand, within MPMX19_04332at 696.722 kb on + strand, within MPMX19_04332at 696.722 kb on + strand, within MPMX19_04332at 696.722 kb on + strand, within MPMX19_04332at 696.722 kb on + strand, within MPMX19_04332at 696.722 kb on + strand, within MPMX19_04332at 696.722 kb on + strand, within MPMX19_04332at 696.722 kb on + strand, within MPMX19_04332at 696.722 kb on + strand, within MPMX19_04332at 696.722 kb on + strand, within MPMX19_04332at 696.723 kb on - strand, within MPMX19_04332at 696.723 kb on - strand, within MPMX19_04332at 696.723 kb on - strand, within MPMX19_04332at 696.723 kb on - strand, within MPMX19_04332at 696.723 kb on - strand, within MPMX19_04332at 696.723 kb on - strand, within MPMX19_04332at 696.723 kb on - strand, within MPMX19_04332at 696.723 kb on - strand, within MPMX19_04332at 696.723 kb on - strand, within MPMX19_04332at 696.723 kb on - strand, within MPMX19_04332at 696.723 kb on - strand, within MPMX19_04332at 696.833 kb on + strand, within MPMX19_04332at 697.183 kb on + strandat 697.184 kb on - strandat 697.184 kb on - strandat 697.184 kb on - strandat 697.184 kb on - strandat 697.184 kb on - strandat 697.258 kb on + strandat 697.258 kb on + strandat 697.259 kb on - strandat 697.259 kb on - strandat 697.259 kb on - strandat 697.259 kb on - strandat 697.297 kb on - strandat 697.298 kb on + strandat 697.298 kb on + strandat 697.298 kb on + strandat 697.299 kb on - strandat 697.299 kb on - strandat 697.299 kb on - strandat 697.299 kb on - strandat 697.299 kb on - strandat 697.299 kb on - strandat 697.345 kb on + strandat 697.346 kb on - strandat 697.379 kb on - strandat 697.459 kb on - strandat 697.486 kb on - strandat 697.489 kb on + strandat 697.493 kb on + strandat 697.494 kb on - strandat 697.526 kb on - strandat 697.526 kb on - strandat 697.565 kb on + strand, within MPMX19_04334at 697.566 kb on - strand, within MPMX19_04334at 697.566 kb on - strand, within MPMX19_04334at 697.570 kb on + strand, within MPMX19_04334at 697.598 kb on - strand, within MPMX19_04334at 697.707 kb on + strand, within MPMX19_04334at 697.708 kb on - strand, within MPMX19_04334at 697.708 kb on - strand, within MPMX19_04334at 697.710 kb on + strand, within MPMX19_04334at 697.753 kb on + strand, within MPMX19_04334at 697.753 kb on + strand, within MPMX19_04334at 697.753 kb on + strand, within MPMX19_04334at 697.754 kb on - strand, within MPMX19_04334at 697.754 kb on - strand, within MPMX19_04334at 697.796 kb on + strand, within MPMX19_04334at 697.796 kb on + strand, within MPMX19_04334at 697.796 kb on + strand, within MPMX19_04334at 697.797 kb on - strand, within MPMX19_04334at 697.804 kb on - strand, within MPMX19_04334at 697.852 kb on + strand, within MPMX19_04334at 697.853 kb on - strand, within MPMX19_04334at 697.879 kb on + strand, within MPMX19_04334at 697.879 kb on + strand, within MPMX19_04334at 697.879 kb on + strand, within MPMX19_04334at 697.879 kb on + strand, within MPMX19_04334at 697.880 kb on - strand, within MPMX19_04334at 697.880 kb on - strand, within MPMX19_04334at 697.893 kb on - strand, within MPMX19_04334at 697.918 kb on + strand, within MPMX19_04334at 697.918 kb on + strand, within MPMX19_04334at 697.918 kb on + strand, within MPMX19_04334at 697.919 kb on - strand, within MPMX19_04334at 697.919 kb on - strand, within MPMX19_04334at 697.956 kb on + strand, within MPMX19_04334at 697.956 kb on + strand, within MPMX19_04334at 697.957 kb on - strand, within MPMX19_04334at 697.957 kb on - strand, within MPMX19_04334at 697.990 kb on + strand, within MPMX19_04334at 697.990 kb on + strand, within MPMX19_04334at 697.991 kb on - strand, within MPMX19_04334at 697.997 kb on + strand, within MPMX19_04334at 697.997 kb on + strand, within MPMX19_04334at 697.998 kb on - strand, within MPMX19_04334at 697.998 kb on - strand, within MPMX19_04334

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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695,677 + MPMX19_04331 0.20 -0.1
695,707 + MPMX19_04331 0.24 -1.0
695,707 + MPMX19_04331 0.24 +0.2
695,707 + MPMX19_04331 0.24 -0.0
695,707 + MPMX19_04331 0.24 +0.7
695,707 + MPMX19_04331 0.24 -0.7
695,707 + MPMX19_04331 0.24 -0.5
695,707 + MPMX19_04331 0.24 -1.4
695,707 + MPMX19_04331 0.24 +1.3
695,707 + MPMX19_04331 0.24 -0.6
695,707 + MPMX19_04331 0.24 -0.0
695,707 + MPMX19_04331 0.24 -1.1
695,707 + MPMX19_04331 0.24 -0.9
695,708 - MPMX19_04331 0.24 -0.1
695,708 - MPMX19_04331 0.24 -0.6
695,708 - MPMX19_04331 0.24 -0.7
695,708 - MPMX19_04331 0.24 -1.8
695,708 - MPMX19_04331 0.24 -1.3
695,708 - MPMX19_04331 0.24 -0.4
695,708 - MPMX19_04331 0.24 -0.4
695,708 - MPMX19_04331 0.24 +0.1
695,708 - MPMX19_04331 0.24 +0.5
695,794 + MPMX19_04331 0.35 +0.2
695,794 + MPMX19_04331 0.35 -1.0
695,794 + MPMX19_04331 0.35 -0.1
695,794 + MPMX19_04331 0.35 -1.6
695,794 + MPMX19_04331 0.35 -0.9
695,795 - MPMX19_04331 0.35 +0.2
695,795 - MPMX19_04331 0.35 -2.1
695,795 - MPMX19_04331 0.35 -0.7
695,836 + MPMX19_04331 0.40 +0.5
695,836 + MPMX19_04331 0.40 +1.0
695,836 + MPMX19_04331 0.40 +0.4
695,836 + MPMX19_04331 0.40 +1.0
695,836 + MPMX19_04331 0.40 -0.8
695,836 + MPMX19_04331 0.40 -1.4
695,836 + MPMX19_04331 0.40 -0.4
695,837 - MPMX19_04331 0.40 -0.1
695,837 - MPMX19_04331 0.40 -1.1
695,878 + MPMX19_04331 0.46 -0.2
695,878 + MPMX19_04331 0.46 -0.6
695,878 + MPMX19_04331 0.46 +0.4
695,878 + MPMX19_04331 0.46 -0.8
695,878 + MPMX19_04331 0.46 -0.7
695,879 - MPMX19_04331 0.46 +1.7
695,879 - MPMX19_04331 0.46 -0.1
695,879 - MPMX19_04331 0.46 -0.5
695,879 - MPMX19_04331 0.46 -1.7
695,905 + MPMX19_04331 0.49 -1.4
695,905 + MPMX19_04331 0.49 -1.4
695,905 + MPMX19_04331 0.49 -2.0
695,905 + MPMX19_04331 0.49 -1.2
695,905 + MPMX19_04331 0.49 -0.4
695,905 + MPMX19_04331 0.49 -0.7
695,905 + MPMX19_04331 0.49 +0.2
695,905 + MPMX19_04331 0.49 -1.3
695,906 - MPMX19_04331 0.49 +0.7
695,906 - MPMX19_04331 0.49 +0.6
695,906 - MPMX19_04331 0.49 -0.5
695,906 - MPMX19_04331 0.49 -1.1
695,906 - MPMX19_04331 0.49 +1.3
695,962 + MPMX19_04331 0.57 +0.7
695,962 + MPMX19_04331 0.57 -1.5
695,962 + MPMX19_04331 0.57 +0.2
695,962 + MPMX19_04331 0.57 -0.9
695,962 + MPMX19_04331 0.57 -0.6
695,962 + MPMX19_04331 0.57 -0.2
695,962 + MPMX19_04331 0.57 -0.8
695,962 + MPMX19_04331 0.57 -0.8
695,962 + MPMX19_04331 0.57 +0.2
695,962 + MPMX19_04331 0.57 -0.6
695,962 + MPMX19_04331 0.57 +0.0
695,962 + MPMX19_04331 0.57 -1.7
695,963 - MPMX19_04331 0.57 +0.9
695,963 - MPMX19_04331 0.57 +0.2
695,963 - MPMX19_04331 0.57 -1.3
695,963 - MPMX19_04331 0.57 +0.7
695,963 - MPMX19_04331 0.57 +0.7
695,963 - MPMX19_04331 0.57 -0.4
695,963 - MPMX19_04331 0.57 +0.2
696,085 + MPMX19_04331 0.72 -1.0
696,085 + MPMX19_04331 0.72 +0.9
696,086 - MPMX19_04331 0.73 -0.8
696,115 + MPMX19_04331 0.76 -0.5
696,115 + MPMX19_04331 0.76 -1.5
696,115 + MPMX19_04331 0.76 -0.3
696,115 + MPMX19_04331 0.76 -1.4
696,115 + MPMX19_04331 0.76 +1.2
696,116 - MPMX19_04331 0.76 -1.4
696,116 - MPMX19_04331 0.76 +0.7
696,116 - MPMX19_04331 0.76 +1.0
696,117 + MPMX19_04331 0.77 +0.3
696,117 + MPMX19_04331 0.77 +0.6
696,117 + MPMX19_04331 0.77 +0.4
696,117 + MPMX19_04331 0.77 +1.3
696,117 + MPMX19_04331 0.77 -1.4
696,117 + MPMX19_04331 0.77 -0.6
696,117 + MPMX19_04331 0.77 -0.6
696,117 + MPMX19_04331 0.77 -1.2
696,117 + MPMX19_04331 0.77 -0.7
696,117 + MPMX19_04331 0.77 +1.1
696,117 + MPMX19_04331 0.77 +0.3
696,117 + MPMX19_04331 0.77 -0.8
696,118 - MPMX19_04331 0.77 -0.1
696,118 - MPMX19_04331 0.77 -0.0
696,118 - MPMX19_04331 0.77 -0.8
696,118 - MPMX19_04331 0.77 +0.5
696,118 - MPMX19_04331 0.77 -1.0
696,118 - MPMX19_04331 0.77 -0.6
696,130 + MPMX19_04331 0.78 +0.5
696,334 - -0.3
696,362 + -1.1
696,362 + -0.1
696,362 + -0.7
696,362 + -1.8
696,363 - +1.3
696,363 - -1.1
696,363 - -1.3
696,363 - +0.3
696,418 + +1.3
696,419 - -1.0
696,419 - -0.3
696,419 - -0.6
696,419 - +0.5
696,722 + MPMX19_04332 0.51 +0.7
696,722 + MPMX19_04332 0.51 -0.3
696,722 + MPMX19_04332 0.51 +1.3
696,722 + MPMX19_04332 0.51 -2.1
696,722 + MPMX19_04332 0.51 -0.4
696,722 + MPMX19_04332 0.51 -1.3
696,722 + MPMX19_04332 0.51 +0.4
696,722 + MPMX19_04332 0.51 -1.2
696,722 + MPMX19_04332 0.51 -1.6
696,722 + MPMX19_04332 0.51 -0.2
696,722 + MPMX19_04332 0.51 +0.1
696,722 + MPMX19_04332 0.51 +1.5
696,723 - MPMX19_04332 0.51 +0.9
696,723 - MPMX19_04332 0.51 +0.2
696,723 - MPMX19_04332 0.51 +0.4
696,723 - MPMX19_04332 0.51 +0.8
696,723 - MPMX19_04332 0.51 +0.2
696,723 - MPMX19_04332 0.51 -0.8
696,723 - MPMX19_04332 0.51 +0.3
696,723 - MPMX19_04332 0.51 +0.2
696,723 - MPMX19_04332 0.51 +1.2
696,723 - MPMX19_04332 0.51 +0.4
696,723 - MPMX19_04332 0.51 +0.4
696,833 + MPMX19_04332 0.71 +0.2
697,183 + +0.7
697,184 - +0.2
697,184 - -0.0
697,184 - -0.9
697,184 - +1.3
697,184 - -0.4
697,258 + +0.2
697,258 + -1.3
697,259 - -1.7
697,259 - +1.0
697,259 - +0.2
697,259 - +0.1
697,297 - -0.3
697,298 + -0.3
697,298 + -1.3
697,298 + +0.4
697,299 - +1.7
697,299 - -0.0
697,299 - -0.3
697,299 - -2.1
697,299 - -0.0
697,299 - -0.5
697,345 + -2.1
697,346 - -0.6
697,379 - +1.0
697,459 - +0.7
697,486 - -0.9
697,489 + -1.4
697,493 + +1.2
697,494 - +1.3
697,526 - -0.1
697,526 - -0.1
697,565 + MPMX19_04334 0.12 +0.7
697,566 - MPMX19_04334 0.12 +0.2
697,566 - MPMX19_04334 0.12 +1.1
697,570 + MPMX19_04334 0.12 -0.6
697,598 - MPMX19_04334 0.16 +0.3
697,707 + MPMX19_04334 0.29 -0.4
697,708 - MPMX19_04334 0.29 -0.8
697,708 - MPMX19_04334 0.29 -1.0
697,710 + MPMX19_04334 0.29 -1.0
697,753 + MPMX19_04334 0.34 -0.6
697,753 + MPMX19_04334 0.34 +0.0
697,753 + MPMX19_04334 0.34 -1.8
697,754 - MPMX19_04334 0.34 +0.5
697,754 - MPMX19_04334 0.34 +1.7
697,796 + MPMX19_04334 0.39 +0.2
697,796 + MPMX19_04334 0.39 +0.2
697,796 + MPMX19_04334 0.39 -0.7
697,797 - MPMX19_04334 0.39 -0.5
697,804 - MPMX19_04334 0.40 +0.2
697,852 + MPMX19_04334 0.46 +2.2
697,853 - MPMX19_04334 0.46 +1.0
697,879 + MPMX19_04334 0.49 -0.1
697,879 + MPMX19_04334 0.49 -0.8
697,879 + MPMX19_04334 0.49 +0.3
697,879 + MPMX19_04334 0.49 +0.9
697,880 - MPMX19_04334 0.49 +0.5
697,880 - MPMX19_04334 0.49 -0.8
697,893 - MPMX19_04334 0.50 +1.0
697,918 + MPMX19_04334 0.53 -0.8
697,918 + MPMX19_04334 0.53 -0.1
697,918 + MPMX19_04334 0.53 -0.3
697,919 - MPMX19_04334 0.53 -2.0
697,919 - MPMX19_04334 0.53 +0.2
697,956 + MPMX19_04334 0.58 -0.6
697,956 + MPMX19_04334 0.58 -1.6
697,957 - MPMX19_04334 0.58 -0.1
697,957 - MPMX19_04334 0.58 -0.3
697,990 + MPMX19_04334 0.62 -0.8
697,990 + MPMX19_04334 0.62 -1.6
697,991 - MPMX19_04334 0.62 -2.0
697,997 + MPMX19_04334 0.63 -0.8
697,997 + MPMX19_04334 0.63 +0.3
697,998 - MPMX19_04334 0.63 -1.7
697,998 - MPMX19_04334 0.63 -2.4

Or see this region's nucleotide sequence