Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04282 and MPMX19_04283 are separated by 318 nucleotides MPMX19_04283 and MPMX19_04284 are separated by 163 nucleotides MPMX19_04284 and MPMX19_04285 are separated by 98 nucleotides
MPMX19_04282: MPMX19_04282 - hypothetical protein, at 641,408 to 642,394
_04282
MPMX19_04283: MPMX19_04283 - hypothetical protein, at 642,713 to 643,348
_04283
MPMX19_04284: MPMX19_04284 - hypothetical protein, at 643,512 to 643,832
_04284
MPMX19_04285: MPMX19_04285 - Homoserine O-acetyltransferase, at 643,931 to 645,145
_04285
Position (kb) 642
643
644 Strain fitness (log2 ratio) -2
-1
0
1
2 at 641.814 kb on + strand, within MPMX19_04282 at 641.814 kb on + strand, within MPMX19_04282 at 641.814 kb on + strand, within MPMX19_04282 at 641.814 kb on + strand, within MPMX19_04282 at 642.159 kb on + strand, within MPMX19_04282 at 642.159 kb on + strand, within MPMX19_04282 at 642.159 kb on + strand, within MPMX19_04282 at 642.159 kb on + strand, within MPMX19_04282 at 642.159 kb on + strand, within MPMX19_04282 at 642.714 kb on + strand at 642.714 kb on + strand at 642.714 kb on + strand at 642.715 kb on - strand at 643.128 kb on + strand, within MPMX19_04283 at 643.128 kb on + strand, within MPMX19_04283 at 643.128 kb on + strand, within MPMX19_04283 at 643.128 kb on + strand, within MPMX19_04283 at 643.128 kb on + strand, within MPMX19_04283 at 643.128 kb on + strand, within MPMX19_04283 at 643.128 kb on + strand, within MPMX19_04283 at 643.128 kb on + strand, within MPMX19_04283 at 643.128 kb on + strand, within MPMX19_04283 at 643.128 kb on + strand, within MPMX19_04283 at 643.128 kb on + strand, within MPMX19_04283 at 643.128 kb on + strand, within MPMX19_04283 at 643.128 kb on + strand, within MPMX19_04283 at 643.129 kb on - strand, within MPMX19_04283 at 643.129 kb on - strand, within MPMX19_04283 at 643.129 kb on - strand, within MPMX19_04283 at 643.129 kb on - strand, within MPMX19_04283 at 643.129 kb on - strand, within MPMX19_04283 at 643.129 kb on - strand, within MPMX19_04283 at 643.129 kb on - strand, within MPMX19_04283 at 643.129 kb on - strand, within MPMX19_04283 at 643.129 kb on - strand, within MPMX19_04283 at 643.381 kb on + strand at 643.381 kb on + strand at 643.381 kb on + strand at 643.381 kb on + strand at 643.381 kb on + strand at 643.381 kb on + strand at 643.381 kb on + strand at 643.381 kb on + strand at 643.381 kb on + strand at 643.382 kb on - strand at 643.382 kb on - strand at 643.382 kb on - strand at 643.382 kb on - strand at 643.382 kb on - strand at 643.382 kb on - strand at 643.382 kb on - strand at 643.382 kb on - strand at 643.382 kb on - strand at 643.419 kb on + strand at 643.419 kb on + strand at 643.419 kb on + strand at 643.420 kb on - strand at 643.420 kb on - strand at 643.420 kb on - strand at 643.420 kb on - strand at 643.420 kb on - strand at 643.462 kb on + strand at 643.560 kb on + strand, within MPMX19_04284 at 643.560 kb on + strand, within MPMX19_04284 at 643.561 kb on - strand, within MPMX19_04284 at 643.561 kb on - strand, within MPMX19_04284 at 643.561 kb on - strand, within MPMX19_04284 at 643.561 kb on - strand, within MPMX19_04284 at 643.561 kb on - strand, within MPMX19_04284 at 643.660 kb on - strand, within MPMX19_04284 at 643.761 kb on + strand, within MPMX19_04284 at 643.761 kb on + strand, within MPMX19_04284 at 643.761 kb on + strand, within MPMX19_04284 at 643.761 kb on + strand, within MPMX19_04284 at 643.762 kb on - strand, within MPMX19_04284 at 643.762 kb on - strand, within MPMX19_04284 at 643.762 kb on - strand, within MPMX19_04284 at 643.762 kb on - strand, within MPMX19_04284 at 643.762 kb on - strand, within MPMX19_04284 at 643.831 kb on - strand at 643.849 kb on + strand at 643.849 kb on + strand at 643.849 kb on + strand at 643.850 kb on - strand at 643.850 kb on - strand at 643.850 kb on - strand at 643.850 kb on - strand at 643.850 kb on - strand at 643.850 kb on - strand at 643.850 kb on - strand at 643.850 kb on - strand at 643.885 kb on + strand at 643.885 kb on + strand at 643.885 kb on + strand at 643.885 kb on + strand at 643.885 kb on + strand at 643.885 kb on + strand at 643.885 kb on + strand at 643.885 kb on + strand at 643.885 kb on + strand at 643.886 kb on - strand at 643.886 kb on - strand at 643.886 kb on - strand at 643.886 kb on - strand at 643.891 kb on + strand at 643.891 kb on + strand at 643.891 kb on + strand at 643.891 kb on + strand at 643.891 kb on + strand at 643.891 kb on + strand at 643.891 kb on + strand at 643.891 kb on + strand at 643.891 kb on + strand at 643.891 kb on + strand at 643.891 kb on + strand at 643.892 kb on - strand at 643.892 kb on - strand at 643.892 kb on - strand at 643.892 kb on - strand at 643.892 kb on - strand at 643.892 kb on - strand at 643.892 kb on - strand at 643.892 kb on - strand at 643.892 kb on - strand at 643.892 kb on - strand at 643.908 kb on + strand at 643.908 kb on + strand at 643.909 kb on - strand at 643.909 kb on - strand at 643.909 kb on - strand at 644.066 kb on + strand, within MPMX19_04285 at 644.120 kb on + strand, within MPMX19_04285 at 644.121 kb on - strand, within MPMX19_04285 at 644.121 kb on - strand, within MPMX19_04285 at 644.121 kb on - strand, within MPMX19_04285 at 644.182 kb on + strand, within MPMX19_04285 at 644.182 kb on + strand, within MPMX19_04285 at 644.182 kb on + strand, within MPMX19_04285 at 644.182 kb on + strand, within MPMX19_04285 at 644.183 kb on - strand, within MPMX19_04285 at 644.201 kb on + strand, within MPMX19_04285 at 644.201 kb on + strand, within MPMX19_04285 at 644.201 kb on + strand, within MPMX19_04285 at 644.201 kb on + strand, within MPMX19_04285 at 644.202 kb on - strand, within MPMX19_04285 at 644.202 kb on - strand, within MPMX19_04285 at 644.276 kb on + strand, within MPMX19_04285 at 644.276 kb on + strand, within MPMX19_04285 at 644.276 kb on + strand, within MPMX19_04285 at 644.276 kb on + strand, within MPMX19_04285 at 644.276 kb on + strand, within MPMX19_04285 at 644.276 kb on + strand, within MPMX19_04285 at 644.277 kb on - strand, within MPMX19_04285 at 644.277 kb on - strand, within MPMX19_04285 at 644.277 kb on - strand, within MPMX19_04285 at 644.277 kb on - strand, within MPMX19_04285
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 641,814 + MPMX19_04282 0.41 -0.6 641,814 + MPMX19_04282 0.41 -0.1 641,814 + MPMX19_04282 0.41 -0.3 641,814 + MPMX19_04282 0.41 -0.7 642,159 + MPMX19_04282 0.76 -0.8 642,159 + MPMX19_04282 0.76 +0.5 642,159 + MPMX19_04282 0.76 +0.4 642,159 + MPMX19_04282 0.76 -1.1 642,159 + MPMX19_04282 0.76 -1.1 642,714 + +0.6 642,714 + -0.7 642,714 + +2.2 642,715 - +0.7 643,128 + MPMX19_04283 0.65 -1.8 643,128 + MPMX19_04283 0.65 -0.2 643,128 + MPMX19_04283 0.65 -0.3 643,128 + MPMX19_04283 0.65 -0.2 643,128 + MPMX19_04283 0.65 -0.3 643,128 + MPMX19_04283 0.65 -0.4 643,128 + MPMX19_04283 0.65 +1.1 643,128 + MPMX19_04283 0.65 -2.4 643,128 + MPMX19_04283 0.65 +0.6 643,128 + MPMX19_04283 0.65 -1.1 643,128 + MPMX19_04283 0.65 +0.0 643,128 + MPMX19_04283 0.65 -1.1 643,128 + MPMX19_04283 0.65 -0.9 643,129 - MPMX19_04283 0.65 -0.5 643,129 - MPMX19_04283 0.65 -0.6 643,129 - MPMX19_04283 0.65 -0.5 643,129 - MPMX19_04283 0.65 +1.0 643,129 - MPMX19_04283 0.65 -0.3 643,129 - MPMX19_04283 0.65 -0.9 643,129 - MPMX19_04283 0.65 -0.7 643,129 - MPMX19_04283 0.65 +0.1 643,129 - MPMX19_04283 0.65 -2.3 643,381 + -1.9 643,381 + +0.1 643,381 + -0.5 643,381 + -0.9 643,381 + +1.0 643,381 + -0.2 643,381 + -1.0 643,381 + -0.3 643,381 + +0.1 643,382 - +0.3 643,382 - +0.3 643,382 - +0.5 643,382 - -1.3 643,382 - -0.9 643,382 - +0.5 643,382 - +1.7 643,382 - +1.0 643,382 - -0.9 643,419 + -0.3 643,419 + -1.0 643,419 + -1.0 643,420 - +0.5 643,420 - +0.5 643,420 - +0.2 643,420 - -0.3 643,420 - -0.9 643,462 + -0.6 643,560 + MPMX19_04284 0.15 +0.1 643,560 + MPMX19_04284 0.15 -0.1 643,561 - MPMX19_04284 0.15 -0.2 643,561 - MPMX19_04284 0.15 +0.7 643,561 - MPMX19_04284 0.15 -2.1 643,561 - MPMX19_04284 0.15 +0.0 643,561 - MPMX19_04284 0.15 -0.5 643,660 - MPMX19_04284 0.46 +0.8 643,761 + MPMX19_04284 0.78 +0.1 643,761 + MPMX19_04284 0.78 -1.8 643,761 + MPMX19_04284 0.78 +1.0 643,761 + MPMX19_04284 0.78 +0.2 643,762 - MPMX19_04284 0.78 -2.2 643,762 - MPMX19_04284 0.78 +0.8 643,762 - MPMX19_04284 0.78 -0.5 643,762 - MPMX19_04284 0.78 -0.6 643,762 - MPMX19_04284 0.78 -1.7 643,831 - +0.1 643,849 + -0.3 643,849 + +0.5 643,849 + -1.0 643,850 - -0.2 643,850 - +0.2 643,850 - -0.3 643,850 - -0.6 643,850 - -1.1 643,850 - -0.6 643,850 - -1.7 643,850 - -0.7 643,885 + -1.0 643,885 + -0.5 643,885 + -0.2 643,885 + -1.1 643,885 + -0.6 643,885 + -0.5 643,885 + +0.1 643,885 + +0.2 643,885 + -0.1 643,886 - -1.1 643,886 - -0.2 643,886 - -1.2 643,886 - +0.9 643,891 + +0.1 643,891 + +0.1 643,891 + -1.0 643,891 + -0.1 643,891 + -0.4 643,891 + +0.5 643,891 + +0.4 643,891 + -1.6 643,891 + -0.5 643,891 + -0.6 643,891 + +1.3 643,892 - -1.5 643,892 - -1.3 643,892 - -0.2 643,892 - -0.4 643,892 - +0.3 643,892 - -0.7 643,892 - -0.9 643,892 - -0.5 643,892 - +0.3 643,892 - -0.3 643,908 + -0.9 643,908 + -0.5 643,909 - +0.4 643,909 - -1.7 643,909 - -1.7 644,066 + MPMX19_04285 0.11 -0.9 644,120 + MPMX19_04285 0.16 -0.2 644,121 - MPMX19_04285 0.16 +0.7 644,121 - MPMX19_04285 0.16 -1.1 644,121 - MPMX19_04285 0.16 +0.7 644,182 + MPMX19_04285 0.21 +0.2 644,182 + MPMX19_04285 0.21 +0.4 644,182 + MPMX19_04285 0.21 -0.7 644,182 + MPMX19_04285 0.21 +0.5 644,183 - MPMX19_04285 0.21 -1.6 644,201 + MPMX19_04285 0.22 +0.5 644,201 + MPMX19_04285 0.22 +0.1 644,201 + MPMX19_04285 0.22 +0.3 644,201 + MPMX19_04285 0.22 -0.8 644,202 - MPMX19_04285 0.22 -1.5 644,202 - MPMX19_04285 0.22 -1.1 644,276 + MPMX19_04285 0.28 -0.9 644,276 + MPMX19_04285 0.28 +0.0 644,276 + MPMX19_04285 0.28 +1.5 644,276 + MPMX19_04285 0.28 +0.1 644,276 + MPMX19_04285 0.28 +1.0 644,276 + MPMX19_04285 0.28 +0.1 644,277 - MPMX19_04285 0.28 -0.3 644,277 - MPMX19_04285 0.28 -0.2 644,277 - MPMX19_04285 0.28 -0.5 644,277 - MPMX19_04285 0.28 -1.3
Or see this region's nucleotide sequence