Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04282

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04280 and MPMX19_04281 are separated by 9 nucleotidesMPMX19_04281 and MPMX19_04282 overlap by 13 nucleotidesMPMX19_04282 and MPMX19_04283 are separated by 318 nucleotides MPMX19_04280: MPMX19_04280 - hypothetical protein, at 640,182 to 640,523 _04280 MPMX19_04281: MPMX19_04281 - hypothetical protein, at 640,533 to 641,420 _04281 MPMX19_04282: MPMX19_04282 - hypothetical protein, at 641,408 to 642,394 _04282 MPMX19_04283: MPMX19_04283 - hypothetical protein, at 642,713 to 643,348 _04283 Position (kb) 641 642 643Strain fitness (log2 ratio) -2 -1 0 1 2at 640.783 kb on + strand, within MPMX19_04281at 640.783 kb on + strand, within MPMX19_04281at 640.783 kb on + strand, within MPMX19_04281at 640.783 kb on + strand, within MPMX19_04281at 640.784 kb on - strand, within MPMX19_04281at 640.807 kb on + strand, within MPMX19_04281at 640.807 kb on + strand, within MPMX19_04281at 640.807 kb on + strand, within MPMX19_04281at 640.807 kb on + strand, within MPMX19_04281at 640.832 kb on + strand, within MPMX19_04281at 640.832 kb on + strand, within MPMX19_04281at 640.832 kb on + strand, within MPMX19_04281at 640.832 kb on + strand, within MPMX19_04281at 640.832 kb on + strand, within MPMX19_04281at 640.832 kb on + strand, within MPMX19_04281at 640.832 kb on + strand, within MPMX19_04281at 640.834 kb on + strand, within MPMX19_04281at 640.834 kb on + strand, within MPMX19_04281at 640.834 kb on + strand, within MPMX19_04281at 640.834 kb on + strand, within MPMX19_04281at 640.834 kb on + strand, within MPMX19_04281at 640.834 kb on + strand, within MPMX19_04281at 640.834 kb on + strand, within MPMX19_04281at 640.834 kb on + strand, within MPMX19_04281at 640.834 kb on + strand, within MPMX19_04281at 640.834 kb on + strand, within MPMX19_04281at 640.834 kb on + strand, within MPMX19_04281at 640.834 kb on + strand, within MPMX19_04281at 640.834 kb on + strand, within MPMX19_04281at 640.834 kb on + strand, within MPMX19_04281at 640.834 kb on + strand, within MPMX19_04281at 640.834 kb on + strand, within MPMX19_04281at 640.834 kb on + strand, within MPMX19_04281at 640.834 kb on + strand, within MPMX19_04281at 640.834 kb on + strand, within MPMX19_04281at 640.834 kb on + strand, within MPMX19_04281at 640.835 kb on - strand, within MPMX19_04281at 641.005 kb on + strand, within MPMX19_04281at 641.005 kb on + strand, within MPMX19_04281at 641.005 kb on + strand, within MPMX19_04281at 641.005 kb on + strand, within MPMX19_04281at 641.005 kb on + strand, within MPMX19_04281at 641.005 kb on + strand, within MPMX19_04281at 641.005 kb on + strand, within MPMX19_04281at 641.005 kb on + strand, within MPMX19_04281at 641.005 kb on + strand, within MPMX19_04281at 641.006 kb on - strand, within MPMX19_04281at 641.006 kb on - strand, within MPMX19_04281at 641.006 kb on - strand, within MPMX19_04281at 641.065 kb on + strand, within MPMX19_04281at 641.065 kb on + strand, within MPMX19_04281at 641.066 kb on - strand, within MPMX19_04281at 641.066 kb on - strand, within MPMX19_04281at 641.066 kb on - strand, within MPMX19_04281at 641.066 kb on - strand, within MPMX19_04281at 641.066 kb on - strand, within MPMX19_04281at 641.571 kb on + strand, within MPMX19_04282at 641.571 kb on + strand, within MPMX19_04282at 641.571 kb on + strand, within MPMX19_04282at 641.571 kb on + strand, within MPMX19_04282at 641.610 kb on + strand, within MPMX19_04282at 641.610 kb on + strand, within MPMX19_04282at 641.610 kb on + strand, within MPMX19_04282at 641.610 kb on + strand, within MPMX19_04282at 641.610 kb on + strand, within MPMX19_04282at 641.610 kb on + strand, within MPMX19_04282at 641.610 kb on + strand, within MPMX19_04282at 641.610 kb on + strand, within MPMX19_04282at 641.610 kb on + strand, within MPMX19_04282at 641.814 kb on + strand, within MPMX19_04282at 641.814 kb on + strand, within MPMX19_04282at 641.814 kb on + strand, within MPMX19_04282at 641.814 kb on + strand, within MPMX19_04282at 642.159 kb on + strand, within MPMX19_04282at 642.159 kb on + strand, within MPMX19_04282at 642.159 kb on + strand, within MPMX19_04282at 642.159 kb on + strand, within MPMX19_04282at 642.159 kb on + strand, within MPMX19_04282at 642.714 kb on + strandat 642.714 kb on + strandat 642.714 kb on + strandat 642.715 kb on - strandat 643.128 kb on + strand, within MPMX19_04283at 643.128 kb on + strand, within MPMX19_04283at 643.128 kb on + strand, within MPMX19_04283at 643.128 kb on + strand, within MPMX19_04283at 643.128 kb on + strand, within MPMX19_04283at 643.128 kb on + strand, within MPMX19_04283at 643.128 kb on + strand, within MPMX19_04283at 643.128 kb on + strand, within MPMX19_04283at 643.128 kb on + strand, within MPMX19_04283at 643.128 kb on + strand, within MPMX19_04283at 643.128 kb on + strand, within MPMX19_04283at 643.128 kb on + strand, within MPMX19_04283at 643.128 kb on + strand, within MPMX19_04283at 643.129 kb on - strand, within MPMX19_04283at 643.129 kb on - strand, within MPMX19_04283at 643.129 kb on - strand, within MPMX19_04283at 643.129 kb on - strand, within MPMX19_04283at 643.129 kb on - strand, within MPMX19_04283at 643.129 kb on - strand, within MPMX19_04283at 643.129 kb on - strand, within MPMX19_04283at 643.129 kb on - strand, within MPMX19_04283at 643.129 kb on - strand, within MPMX19_04283at 643.381 kb on + strandat 643.381 kb on + strandat 643.381 kb on + strandat 643.381 kb on + strandat 643.381 kb on + strandat 643.381 kb on + strandat 643.381 kb on + strandat 643.381 kb on + strandat 643.381 kb on + strandat 643.382 kb on - strandat 643.382 kb on - strandat 643.382 kb on - strandat 643.382 kb on - strandat 643.382 kb on - strandat 643.382 kb on - strandat 643.382 kb on - strandat 643.382 kb on - strandat 643.382 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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640,783 + MPMX19_04281 0.28 -2.0
640,783 + MPMX19_04281 0.28 -0.8
640,783 + MPMX19_04281 0.28 -0.2
640,783 + MPMX19_04281 0.28 +0.3
640,784 - MPMX19_04281 0.28 +0.4
640,807 + MPMX19_04281 0.31 +0.4
640,807 + MPMX19_04281 0.31 -0.1
640,807 + MPMX19_04281 0.31 -0.7
640,807 + MPMX19_04281 0.31 -0.2
640,832 + MPMX19_04281 0.34 -0.1
640,832 + MPMX19_04281 0.34 +0.4
640,832 + MPMX19_04281 0.34 -1.0
640,832 + MPMX19_04281 0.34 -0.1
640,832 + MPMX19_04281 0.34 +0.1
640,832 + MPMX19_04281 0.34 -0.0
640,832 + MPMX19_04281 0.34 -0.9
640,834 + MPMX19_04281 0.34 +0.7
640,834 + MPMX19_04281 0.34 -1.8
640,834 + MPMX19_04281 0.34 +0.9
640,834 + MPMX19_04281 0.34 -1.1
640,834 + MPMX19_04281 0.34 -2.0
640,834 + MPMX19_04281 0.34 +0.0
640,834 + MPMX19_04281 0.34 +0.3
640,834 + MPMX19_04281 0.34 +0.3
640,834 + MPMX19_04281 0.34 +0.3
640,834 + MPMX19_04281 0.34 -0.4
640,834 + MPMX19_04281 0.34 +0.1
640,834 + MPMX19_04281 0.34 -0.0
640,834 + MPMX19_04281 0.34 -0.9
640,834 + MPMX19_04281 0.34 -0.3
640,834 + MPMX19_04281 0.34 -2.0
640,834 + MPMX19_04281 0.34 -0.0
640,834 + MPMX19_04281 0.34 +0.1
640,834 + MPMX19_04281 0.34 -0.6
640,834 + MPMX19_04281 0.34 -0.9
640,834 + MPMX19_04281 0.34 +0.0
640,835 - MPMX19_04281 0.34 +2.7
641,005 + MPMX19_04281 0.53 -1.5
641,005 + MPMX19_04281 0.53 +0.1
641,005 + MPMX19_04281 0.53 -1.3
641,005 + MPMX19_04281 0.53 +0.4
641,005 + MPMX19_04281 0.53 +0.5
641,005 + MPMX19_04281 0.53 -0.6
641,005 + MPMX19_04281 0.53 +2.2
641,005 + MPMX19_04281 0.53 -0.2
641,005 + MPMX19_04281 0.53 -0.1
641,006 - MPMX19_04281 0.53 +1.5
641,006 - MPMX19_04281 0.53 -0.9
641,006 - MPMX19_04281 0.53 +1.1
641,065 + MPMX19_04281 0.60 +1.3
641,065 + MPMX19_04281 0.60 -1.0
641,066 - MPMX19_04281 0.60 -0.1
641,066 - MPMX19_04281 0.60 +1.3
641,066 - MPMX19_04281 0.60 -0.7
641,066 - MPMX19_04281 0.60 -1.6
641,066 - MPMX19_04281 0.60 +1.1
641,571 + MPMX19_04282 0.17 -1.3
641,571 + MPMX19_04282 0.17 -0.9
641,571 + MPMX19_04282 0.17 -0.0
641,571 + MPMX19_04282 0.17 -1.4
641,610 + MPMX19_04282 0.20 -1.3
641,610 + MPMX19_04282 0.20 -0.0
641,610 + MPMX19_04282 0.20 +0.3
641,610 + MPMX19_04282 0.20 +0.0
641,610 + MPMX19_04282 0.20 -0.4
641,610 + MPMX19_04282 0.20 -1.7
641,610 + MPMX19_04282 0.20 -1.3
641,610 + MPMX19_04282 0.20 -0.1
641,610 + MPMX19_04282 0.20 +0.7
641,814 + MPMX19_04282 0.41 -0.6
641,814 + MPMX19_04282 0.41 -0.1
641,814 + MPMX19_04282 0.41 -0.3
641,814 + MPMX19_04282 0.41 -0.7
642,159 + MPMX19_04282 0.76 -0.8
642,159 + MPMX19_04282 0.76 +0.5
642,159 + MPMX19_04282 0.76 +0.4
642,159 + MPMX19_04282 0.76 -1.1
642,159 + MPMX19_04282 0.76 -1.1
642,714 + +0.6
642,714 + -0.7
642,714 + +2.2
642,715 - +0.7
643,128 + MPMX19_04283 0.65 -1.8
643,128 + MPMX19_04283 0.65 -0.2
643,128 + MPMX19_04283 0.65 -0.3
643,128 + MPMX19_04283 0.65 -0.2
643,128 + MPMX19_04283 0.65 -0.3
643,128 + MPMX19_04283 0.65 -0.4
643,128 + MPMX19_04283 0.65 +1.1
643,128 + MPMX19_04283 0.65 -2.4
643,128 + MPMX19_04283 0.65 +0.6
643,128 + MPMX19_04283 0.65 -1.1
643,128 + MPMX19_04283 0.65 +0.0
643,128 + MPMX19_04283 0.65 -1.1
643,128 + MPMX19_04283 0.65 -0.9
643,129 - MPMX19_04283 0.65 -0.5
643,129 - MPMX19_04283 0.65 -0.6
643,129 - MPMX19_04283 0.65 -0.5
643,129 - MPMX19_04283 0.65 +1.0
643,129 - MPMX19_04283 0.65 -0.3
643,129 - MPMX19_04283 0.65 -0.9
643,129 - MPMX19_04283 0.65 -0.7
643,129 - MPMX19_04283 0.65 +0.1
643,129 - MPMX19_04283 0.65 -2.3
643,381 + -1.9
643,381 + +0.1
643,381 + -0.5
643,381 + -0.9
643,381 + +1.0
643,381 + -0.2
643,381 + -1.0
643,381 + -0.3
643,381 + +0.1
643,382 - +0.3
643,382 - +0.3
643,382 - +0.5
643,382 - -1.3
643,382 - -0.9
643,382 - +0.5
643,382 - +1.7
643,382 - +1.0
643,382 - -0.9

Or see this region's nucleotide sequence