Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04244 and MPMX19_04245 are separated by 228 nucleotides MPMX19_04245 and MPMX19_04246 are separated by 190 nucleotides MPMX19_04246 and MPMX19_04247 are separated by 69 nucleotides
MPMX19_04244: MPMX19_04244 - hypothetical protein, at 591,246 to 591,464
_04244
MPMX19_04245: MPMX19_04245 - hypothetical protein, at 591,693 to 592,139
_04245
MPMX19_04246: MPMX19_04246 - hypothetical protein, at 592,330 to 592,758
_04246
MPMX19_04247: MPMX19_04247 - hypothetical protein, at 592,828 to 595,608
_04247
Position (kb) 592
593 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 591.361 kb on + strand, within MPMX19_04244 at 591.361 kb on + strand, within MPMX19_04244 at 591.361 kb on + strand, within MPMX19_04244 at 591.362 kb on - strand, within MPMX19_04244 at 591.362 kb on - strand, within MPMX19_04244 at 591.362 kb on - strand, within MPMX19_04244 at 591.362 kb on - strand, within MPMX19_04244 at 591.397 kb on + strand, within MPMX19_04244 at 591.398 kb on - strand, within MPMX19_04244 at 591.398 kb on - strand, within MPMX19_04244 at 591.440 kb on + strand, within MPMX19_04244 at 591.440 kb on + strand, within MPMX19_04244 at 591.440 kb on + strand, within MPMX19_04244 at 591.441 kb on - strand, within MPMX19_04244 at 591.441 kb on - strand, within MPMX19_04244 at 591.441 kb on - strand, within MPMX19_04244 at 591.441 kb on - strand, within MPMX19_04244 at 591.471 kb on + strand at 591.471 kb on + strand at 591.471 kb on + strand at 591.471 kb on + strand at 591.471 kb on + strand at 591.471 kb on + strand at 591.471 kb on + strand at 591.471 kb on + strand at 591.471 kb on + strand at 591.472 kb on - strand at 591.472 kb on - strand at 591.472 kb on - strand at 591.472 kb on - strand at 591.472 kb on - strand at 591.472 kb on - strand at 591.472 kb on - strand at 591.472 kb on - strand at 591.491 kb on + strand at 591.511 kb on + strand at 591.511 kb on + strand at 591.511 kb on + strand at 591.511 kb on + strand at 591.511 kb on + strand at 591.511 kb on + strand at 591.511 kb on + strand at 591.511 kb on + strand at 591.512 kb on - strand at 591.512 kb on - strand at 591.512 kb on - strand at 591.512 kb on - strand at 591.512 kb on - strand at 591.512 kb on - strand at 591.656 kb on + strand at 591.656 kb on + strand at 591.656 kb on + strand at 591.656 kb on + strand at 591.656 kb on + strand at 591.656 kb on + strand at 591.657 kb on - strand at 591.657 kb on - strand at 591.657 kb on - strand at 591.658 kb on + strand at 591.658 kb on + strand at 591.658 kb on + strand at 591.658 kb on + strand at 591.658 kb on + strand at 591.658 kb on + strand at 591.658 kb on + strand at 591.658 kb on + strand at 591.658 kb on + strand at 591.658 kb on + strand at 591.658 kb on + strand at 591.658 kb on + strand at 591.659 kb on - strand at 591.659 kb on - strand at 591.659 kb on - strand at 591.659 kb on - strand at 591.659 kb on - strand at 591.659 kb on - strand at 591.659 kb on - strand at 591.765 kb on + strand, within MPMX19_04245 at 591.765 kb on + strand, within MPMX19_04245 at 591.765 kb on + strand, within MPMX19_04245 at 591.765 kb on + strand, within MPMX19_04245 at 591.766 kb on - strand, within MPMX19_04245 at 591.766 kb on - strand, within MPMX19_04245 at 591.766 kb on - strand, within MPMX19_04245 at 591.766 kb on - strand, within MPMX19_04245 at 591.766 kb on - strand, within MPMX19_04245 at 591.766 kb on - strand, within MPMX19_04245 at 591.766 kb on - strand, within MPMX19_04245 at 591.766 kb on - strand, within MPMX19_04245 at 591.766 kb on - strand, within MPMX19_04245 at 591.767 kb on + strand, within MPMX19_04245 at 591.767 kb on + strand, within MPMX19_04245 at 591.767 kb on + strand, within MPMX19_04245 at 591.767 kb on + strand, within MPMX19_04245 at 591.767 kb on + strand, within MPMX19_04245 at 591.767 kb on + strand, within MPMX19_04245 at 591.767 kb on + strand, within MPMX19_04245 at 591.767 kb on + strand, within MPMX19_04245 at 591.768 kb on - strand, within MPMX19_04245 at 591.768 kb on - strand, within MPMX19_04245 at 591.768 kb on - strand, within MPMX19_04245 at 591.804 kb on - strand, within MPMX19_04245 at 591.804 kb on - strand, within MPMX19_04245 at 591.911 kb on + strand, within MPMX19_04245 at 592.159 kb on + strand at 592.159 kb on + strand at 592.159 kb on + strand at 592.159 kb on + strand at 592.159 kb on + strand at 592.159 kb on + strand at 592.159 kb on + strand at 592.160 kb on - strand at 592.160 kb on - strand at 592.160 kb on - strand at 592.160 kb on - strand at 592.160 kb on - strand at 592.160 kb on - strand at 592.563 kb on + strand, within MPMX19_04246 at 592.563 kb on + strand, within MPMX19_04246 at 592.563 kb on + strand, within MPMX19_04246 at 592.563 kb on + strand, within MPMX19_04246 at 592.563 kb on + strand, within MPMX19_04246 at 592.564 kb on - strand, within MPMX19_04246 at 592.564 kb on - strand, within MPMX19_04246 at 592.564 kb on - strand, within MPMX19_04246 at 592.564 kb on - strand, within MPMX19_04246 at 593.008 kb on + strand at 593.009 kb on - strand at 593.048 kb on + strand at 593.049 kb on - strand at 593.049 kb on - strand at 593.049 kb on - strand at 593.049 kb on - strand at 593.049 kb on - strand at 593.096 kb on + strand at 593.096 kb on + strand at 593.096 kb on + strand at 593.096 kb on + strand at 593.097 kb on - strand at 593.261 kb on + strand, within MPMX19_04247 at 593.261 kb on + strand, within MPMX19_04247 at 593.261 kb on + strand, within MPMX19_04247 at 593.261 kb on + strand, within MPMX19_04247 at 593.261 kb on + strand, within MPMX19_04247 at 593.261 kb on + strand, within MPMX19_04247 at 593.261 kb on + strand, within MPMX19_04247 at 593.261 kb on + strand, within MPMX19_04247 at 593.261 kb on + strand, within MPMX19_04247 at 593.261 kb on + strand, within MPMX19_04247 at 593.261 kb on + strand, within MPMX19_04247 at 593.261 kb on + strand, within MPMX19_04247 at 593.262 kb on - strand, within MPMX19_04247 at 593.262 kb on - strand, within MPMX19_04247 at 593.262 kb on - strand, within MPMX19_04247 at 593.262 kb on - strand, within MPMX19_04247 at 593.262 kb on - strand, within MPMX19_04247 at 593.262 kb on - strand, within MPMX19_04247 at 593.262 kb on - strand, within MPMX19_04247 at 593.262 kb on - strand, within MPMX19_04247 at 593.262 kb on - strand, within MPMX19_04247 at 593.324 kb on + strand, within MPMX19_04247 at 593.324 kb on + strand, within MPMX19_04247 at 593.324 kb on + strand, within MPMX19_04247 at 593.324 kb on + strand, within MPMX19_04247 at 593.324 kb on + strand, within MPMX19_04247 at 593.324 kb on + strand, within MPMX19_04247 at 593.324 kb on + strand, within MPMX19_04247 at 593.324 kb on + strand, within MPMX19_04247 at 593.324 kb on + strand, within MPMX19_04247 at 593.324 kb on + strand, within MPMX19_04247 at 593.324 kb on + strand, within MPMX19_04247 at 593.324 kb on + strand, within MPMX19_04247 at 593.324 kb on + strand, within MPMX19_04247 at 593.324 kb on + strand, within MPMX19_04247 at 593.324 kb on + strand, within MPMX19_04247 at 593.324 kb on + strand, within MPMX19_04247 at 593.325 kb on - strand, within MPMX19_04247 at 593.325 kb on - strand, within MPMX19_04247 at 593.325 kb on - strand, within MPMX19_04247 at 593.325 kb on - strand, within MPMX19_04247 at 593.325 kb on - strand, within MPMX19_04247 at 593.325 kb on - strand, within MPMX19_04247 at 593.325 kb on - strand, within MPMX19_04247 at 593.325 kb on - strand, within MPMX19_04247 at 593.325 kb on - strand, within MPMX19_04247 at 593.325 kb on - strand, within MPMX19_04247 at 593.325 kb on - strand, within MPMX19_04247 at 593.325 kb on - strand, within MPMX19_04247 at 593.325 kb on - strand, within MPMX19_04247 at 593.325 kb on - strand, within MPMX19_04247 at 593.325 kb on - strand, within MPMX19_04247 at 593.325 kb on - strand, within MPMX19_04247 at 593.325 kb on - strand, within MPMX19_04247 at 593.325 kb on - strand, within MPMX19_04247 at 593.325 kb on - strand, within MPMX19_04247 at 593.325 kb on - strand, within MPMX19_04247 at 593.325 kb on - strand, within MPMX19_04247 at 593.325 kb on - strand, within MPMX19_04247 at 593.325 kb on - strand, within MPMX19_04247 at 593.492 kb on + strand, within MPMX19_04247 at 593.492 kb on + strand, within MPMX19_04247 at 593.492 kb on + strand, within MPMX19_04247 at 593.492 kb on + strand, within MPMX19_04247 at 593.492 kb on + strand, within MPMX19_04247 at 593.492 kb on + strand, within MPMX19_04247 at 593.493 kb on - strand, within MPMX19_04247 at 593.493 kb on - strand, within MPMX19_04247 at 593.493 kb on - strand, within MPMX19_04247 at 593.493 kb on - strand, within MPMX19_04247 at 593.493 kb on - strand, within MPMX19_04247 at 593.493 kb on - strand, within MPMX19_04247 at 593.493 kb on - strand, within MPMX19_04247 at 593.657 kb on + strand, within MPMX19_04247 at 593.657 kb on + strand, within MPMX19_04247 at 593.657 kb on + strand, within MPMX19_04247 at 593.657 kb on + strand, within MPMX19_04247 at 593.657 kb on + strand, within MPMX19_04247 at 593.657 kb on + strand, within MPMX19_04247 at 593.657 kb on + strand, within MPMX19_04247 at 593.657 kb on + strand, within MPMX19_04247 at 593.657 kb on + strand, within MPMX19_04247 at 593.657 kb on + strand, within MPMX19_04247 at 593.657 kb on + strand, within MPMX19_04247 at 593.657 kb on + strand, within MPMX19_04247 at 593.657 kb on + strand, within MPMX19_04247 at 593.658 kb on - strand, within MPMX19_04247 at 593.658 kb on - strand, within MPMX19_04247 at 593.658 kb on - strand, within MPMX19_04247 at 593.658 kb on - strand, within MPMX19_04247 at 593.658 kb on - strand, within MPMX19_04247 at 593.666 kb on + strand, within MPMX19_04247 at 593.666 kb on + strand, within MPMX19_04247 at 593.666 kb on + strand, within MPMX19_04247 at 593.666 kb on + strand, within MPMX19_04247 at 593.666 kb on + strand, within MPMX19_04247 at 593.666 kb on + strand, within MPMX19_04247 at 593.666 kb on + strand, within MPMX19_04247 at 593.666 kb on + strand, within MPMX19_04247 at 593.666 kb on + strand, within MPMX19_04247 at 593.667 kb on - strand, within MPMX19_04247 at 593.667 kb on - strand, within MPMX19_04247 at 593.667 kb on - strand, within MPMX19_04247 at 593.667 kb on - strand, within MPMX19_04247 at 593.667 kb on - strand, within MPMX19_04247 at 593.667 kb on - strand, within MPMX19_04247 at 593.667 kb on - strand, within MPMX19_04247 at 593.667 kb on - strand, within MPMX19_04247 at 593.667 kb on - strand, within MPMX19_04247 at 593.667 kb on - strand, within MPMX19_04247 at 593.667 kb on - strand, within MPMX19_04247 at 593.667 kb on - strand, within MPMX19_04247 at 593.667 kb on - strand, within MPMX19_04247 at 593.667 kb on - strand, within MPMX19_04247 at 593.667 kb on - strand, within MPMX19_04247 at 593.667 kb on - strand, within MPMX19_04247
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 591,361 + MPMX19_04244 0.53 -0.4 591,361 + MPMX19_04244 0.53 -0.6 591,361 + MPMX19_04244 0.53 -2.4 591,362 - MPMX19_04244 0.53 -2.0 591,362 - MPMX19_04244 0.53 +0.1 591,362 - MPMX19_04244 0.53 +0.5 591,362 - MPMX19_04244 0.53 -2.8 591,397 + MPMX19_04244 0.69 -0.6 591,398 - MPMX19_04244 0.69 -0.6 591,398 - MPMX19_04244 0.69 -0.5 591,440 + MPMX19_04244 0.89 -0.6 591,440 + MPMX19_04244 0.89 -0.0 591,440 + MPMX19_04244 0.89 -2.3 591,441 - MPMX19_04244 0.89 +0.4 591,441 - MPMX19_04244 0.89 -2.2 591,441 - MPMX19_04244 0.89 -1.4 591,441 - MPMX19_04244 0.89 -1.3 591,471 + -0.3 591,471 + -0.6 591,471 + -0.3 591,471 + +0.6 591,471 + -1.5 591,471 + +0.4 591,471 + +0.1 591,471 + +0.4 591,471 + -0.2 591,472 - +0.1 591,472 - -0.3 591,472 - -0.5 591,472 - -0.2 591,472 - -0.9 591,472 - -0.1 591,472 - +0.3 591,472 - -0.5 591,491 + +0.5 591,511 + -1.3 591,511 + +0.1 591,511 + -0.9 591,511 + +0.5 591,511 + -0.1 591,511 + +0.1 591,511 + -1.5 591,511 + +0.5 591,512 - -0.4 591,512 - -0.2 591,512 - +0.0 591,512 - -0.5 591,512 - -0.3 591,512 - -1.1 591,656 + -0.5 591,656 + -1.3 591,656 + -0.5 591,656 + -1.5 591,656 + -1.1 591,656 + +1.4 591,657 - -0.4 591,657 - +0.9 591,657 - +0.5 591,658 + -1.0 591,658 + -1.8 591,658 + +0.5 591,658 + -0.3 591,658 + +0.4 591,658 + -0.9 591,658 + -0.3 591,658 + +0.7 591,658 + -0.6 591,658 + +0.1 591,658 + -0.5 591,658 + +0.7 591,659 - -0.3 591,659 - -0.5 591,659 - +0.3 591,659 - -1.4 591,659 - +0.5 591,659 - -0.1 591,659 - -1.0 591,765 + MPMX19_04245 0.16 -0.9 591,765 + MPMX19_04245 0.16 -0.5 591,765 + MPMX19_04245 0.16 -0.6 591,765 + MPMX19_04245 0.16 +0.7 591,766 - MPMX19_04245 0.16 -0.1 591,766 - MPMX19_04245 0.16 +0.4 591,766 - MPMX19_04245 0.16 -0.7 591,766 - MPMX19_04245 0.16 +0.3 591,766 - MPMX19_04245 0.16 -0.2 591,766 - MPMX19_04245 0.16 -0.2 591,766 - MPMX19_04245 0.16 -0.5 591,766 - MPMX19_04245 0.16 -1.5 591,766 - MPMX19_04245 0.16 -1.1 591,767 + MPMX19_04245 0.17 -0.0 591,767 + MPMX19_04245 0.17 -0.1 591,767 + MPMX19_04245 0.17 +1.5 591,767 + MPMX19_04245 0.17 +0.1 591,767 + MPMX19_04245 0.17 +1.5 591,767 + MPMX19_04245 0.17 -0.1 591,767 + MPMX19_04245 0.17 +0.1 591,767 + MPMX19_04245 0.17 -0.9 591,768 - MPMX19_04245 0.17 -0.2 591,768 - MPMX19_04245 0.17 -0.9 591,768 - MPMX19_04245 0.17 -0.2 591,804 - MPMX19_04245 0.25 -0.5 591,804 - MPMX19_04245 0.25 +1.3 591,911 + MPMX19_04245 0.49 -1.5 592,159 + -0.4 592,159 + -0.2 592,159 + -2.1 592,159 + +0.1 592,159 + +0.4 592,159 + +0.1 592,159 + -1.0 592,160 - -0.1 592,160 - -1.6 592,160 - -1.0 592,160 - +0.4 592,160 - +0.3 592,160 - +0.5 592,563 + MPMX19_04246 0.54 +0.3 592,563 + MPMX19_04246 0.54 +0.1 592,563 + MPMX19_04246 0.54 -0.6 592,563 + MPMX19_04246 0.54 +1.0 592,563 + MPMX19_04246 0.54 +0.1 592,564 - MPMX19_04246 0.55 -0.7 592,564 - MPMX19_04246 0.55 +0.3 592,564 - MPMX19_04246 0.55 +0.5 592,564 - MPMX19_04246 0.55 -0.9 593,008 + -0.2 593,009 - -0.2 593,048 + +0.7 593,049 - +0.7 593,049 - +0.9 593,049 - -1.0 593,049 - -1.1 593,049 - -0.4 593,096 + -0.7 593,096 + -0.8 593,096 + -0.8 593,096 + -0.1 593,097 - +0.6 593,261 + MPMX19_04247 0.16 +0.7 593,261 + MPMX19_04247 0.16 +0.6 593,261 + MPMX19_04247 0.16 +0.1 593,261 + MPMX19_04247 0.16 +1.1 593,261 + MPMX19_04247 0.16 -0.8 593,261 + MPMX19_04247 0.16 -0.3 593,261 + MPMX19_04247 0.16 +0.1 593,261 + MPMX19_04247 0.16 +1.3 593,261 + MPMX19_04247 0.16 -0.3 593,261 + MPMX19_04247 0.16 +0.7 593,261 + MPMX19_04247 0.16 -0.7 593,261 + MPMX19_04247 0.16 -0.1 593,262 - MPMX19_04247 0.16 -0.1 593,262 - MPMX19_04247 0.16 +0.5 593,262 - MPMX19_04247 0.16 -1.8 593,262 - MPMX19_04247 0.16 -0.9 593,262 - MPMX19_04247 0.16 -1.9 593,262 - MPMX19_04247 0.16 +0.8 593,262 - MPMX19_04247 0.16 -0.6 593,262 - MPMX19_04247 0.16 +0.7 593,262 - MPMX19_04247 0.16 -0.7 593,324 + MPMX19_04247 0.18 -1.1 593,324 + MPMX19_04247 0.18 -0.5 593,324 + MPMX19_04247 0.18 +0.1 593,324 + MPMX19_04247 0.18 +0.0 593,324 + MPMX19_04247 0.18 -0.0 593,324 + MPMX19_04247 0.18 -0.8 593,324 + MPMX19_04247 0.18 -0.9 593,324 + MPMX19_04247 0.18 +0.2 593,324 + MPMX19_04247 0.18 -0.0 593,324 + MPMX19_04247 0.18 -0.1 593,324 + MPMX19_04247 0.18 -0.4 593,324 + MPMX19_04247 0.18 -0.5 593,324 + MPMX19_04247 0.18 +1.0 593,324 + MPMX19_04247 0.18 -1.9 593,324 + MPMX19_04247 0.18 +0.4 593,324 + MPMX19_04247 0.18 -0.8 593,325 - MPMX19_04247 0.18 +0.1 593,325 - MPMX19_04247 0.18 -0.6 593,325 - MPMX19_04247 0.18 -0.8 593,325 - MPMX19_04247 0.18 -1.5 593,325 - MPMX19_04247 0.18 +0.7 593,325 - MPMX19_04247 0.18 +0.5 593,325 - MPMX19_04247 0.18 +0.8 593,325 - MPMX19_04247 0.18 -0.2 593,325 - MPMX19_04247 0.18 -0.8 593,325 - MPMX19_04247 0.18 -0.3 593,325 - MPMX19_04247 0.18 +0.2 593,325 - MPMX19_04247 0.18 -0.8 593,325 - MPMX19_04247 0.18 +0.4 593,325 - MPMX19_04247 0.18 -0.3 593,325 - MPMX19_04247 0.18 -0.6 593,325 - MPMX19_04247 0.18 -0.6 593,325 - MPMX19_04247 0.18 +0.5 593,325 - MPMX19_04247 0.18 -0.0 593,325 - MPMX19_04247 0.18 -0.2 593,325 - MPMX19_04247 0.18 -1.3 593,325 - MPMX19_04247 0.18 -0.2 593,325 - MPMX19_04247 0.18 +0.5 593,325 - MPMX19_04247 0.18 -1.1 593,492 + MPMX19_04247 0.24 -0.2 593,492 + MPMX19_04247 0.24 +0.1 593,492 + MPMX19_04247 0.24 -1.6 593,492 + MPMX19_04247 0.24 -0.2 593,492 + MPMX19_04247 0.24 -0.2 593,492 + MPMX19_04247 0.24 +0.4 593,493 - MPMX19_04247 0.24 -1.5 593,493 - MPMX19_04247 0.24 +0.5 593,493 - MPMX19_04247 0.24 -0.9 593,493 - MPMX19_04247 0.24 -0.9 593,493 - MPMX19_04247 0.24 +1.7 593,493 - MPMX19_04247 0.24 -1.6 593,493 - MPMX19_04247 0.24 +0.2 593,657 + MPMX19_04247 0.30 +0.0 593,657 + MPMX19_04247 0.30 -0.3 593,657 + MPMX19_04247 0.30 -0.6 593,657 + MPMX19_04247 0.30 +0.6 593,657 + MPMX19_04247 0.30 -0.6 593,657 + MPMX19_04247 0.30 -0.1 593,657 + MPMX19_04247 0.30 -1.1 593,657 + MPMX19_04247 0.30 +0.2 593,657 + MPMX19_04247 0.30 +0.4 593,657 + MPMX19_04247 0.30 -1.0 593,657 + MPMX19_04247 0.30 -0.4 593,657 + MPMX19_04247 0.30 +1.1 593,657 + MPMX19_04247 0.30 -0.3 593,658 - MPMX19_04247 0.30 +0.8 593,658 - MPMX19_04247 0.30 -0.9 593,658 - MPMX19_04247 0.30 +0.4 593,658 - MPMX19_04247 0.30 +0.7 593,658 - MPMX19_04247 0.30 -1.7 593,666 + MPMX19_04247 0.30 -1.6 593,666 + MPMX19_04247 0.30 -0.6 593,666 + MPMX19_04247 0.30 +0.7 593,666 + MPMX19_04247 0.30 -0.3 593,666 + MPMX19_04247 0.30 -1.6 593,666 + MPMX19_04247 0.30 +0.2 593,666 + MPMX19_04247 0.30 +0.5 593,666 + MPMX19_04247 0.30 -1.4 593,666 + MPMX19_04247 0.30 +0.2 593,667 - MPMX19_04247 0.30 -0.3 593,667 - MPMX19_04247 0.30 -0.3 593,667 - MPMX19_04247 0.30 -0.8 593,667 - MPMX19_04247 0.30 +1.2 593,667 - MPMX19_04247 0.30 -1.4 593,667 - MPMX19_04247 0.30 -1.2 593,667 - MPMX19_04247 0.30 -0.5 593,667 - MPMX19_04247 0.30 -2.0 593,667 - MPMX19_04247 0.30 +0.1 593,667 - MPMX19_04247 0.30 +0.4 593,667 - MPMX19_04247 0.30 -0.9 593,667 - MPMX19_04247 0.30 +1.3 593,667 - MPMX19_04247 0.30 -0.6 593,667 - MPMX19_04247 0.30 -0.4 593,667 - MPMX19_04247 0.30 -0.2 593,667 - MPMX19_04247 0.30 -1.5
Or see this region's nucleotide sequence