Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04242

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04240 and MPMX19_04241 overlap by 4 nucleotidesMPMX19_04241 and MPMX19_04242 are separated by 11 nucleotidesMPMX19_04242 and MPMX19_04243 overlap by 4 nucleotidesMPMX19_04243 and MPMX19_04244 are separated by 28 nucleotides MPMX19_04240: MPMX19_04240 - Lipopolysaccharide export system ATP-binding protein LptB, at 588,554 to 589,279 _04240 MPMX19_04241: MPMX19_04241 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 589,276 to 589,998 _04241 MPMX19_04242: MPMX19_04242 - hypothetical protein, at 590,010 to 590,441 _04242 MPMX19_04243: MPMX19_04243 - 2,3-dehydroadipyl-CoA hydratase, at 590,438 to 591,217 _04243 MPMX19_04244: MPMX19_04244 - hypothetical protein, at 591,246 to 591,464 _04244 Position (kb) 590 591Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 589.244 kb on + strandat 589.244 kb on + strandat 589.244 kb on + strandat 589.244 kb on + strandat 589.244 kb on + strandat 589.244 kb on + strandat 589.244 kb on + strandat 589.244 kb on + strandat 589.244 kb on + strandat 589.244 kb on + strandat 589.245 kb on - strandat 589.245 kb on - strandat 589.245 kb on - strandat 589.245 kb on - strandat 589.245 kb on - strandat 589.245 kb on - strandat 589.245 kb on - strandat 589.245 kb on - strandat 589.245 kb on - strandat 589.245 kb on - strandat 589.245 kb on - strandat 589.897 kb on + strand, within MPMX19_04241at 589.897 kb on + strand, within MPMX19_04241at 589.897 kb on + strand, within MPMX19_04241at 589.897 kb on + strand, within MPMX19_04241at 589.897 kb on + strand, within MPMX19_04241at 589.897 kb on + strand, within MPMX19_04241at 589.897 kb on + strand, within MPMX19_04241at 589.897 kb on + strand, within MPMX19_04241at 589.897 kb on + strand, within MPMX19_04241at 589.897 kb on + strand, within MPMX19_04241at 589.897 kb on + strand, within MPMX19_04241at 589.897 kb on + strand, within MPMX19_04241at 589.898 kb on - strand, within MPMX19_04241at 589.898 kb on - strand, within MPMX19_04241at 589.898 kb on - strand, within MPMX19_04241at 589.898 kb on - strand, within MPMX19_04241at 589.898 kb on - strand, within MPMX19_04241at 589.898 kb on - strand, within MPMX19_04241at 589.898 kb on - strand, within MPMX19_04241at 589.898 kb on - strand, within MPMX19_04241at 589.898 kb on - strand, within MPMX19_04241at 589.898 kb on - strand, within MPMX19_04241at 589.972 kb on + strandat 589.972 kb on + strandat 589.972 kb on + strandat 589.972 kb on + strandat 589.972 kb on + strandat 589.972 kb on + strandat 589.973 kb on - strandat 590.064 kb on + strand, within MPMX19_04242at 590.064 kb on + strand, within MPMX19_04242at 590.065 kb on - strand, within MPMX19_04242at 590.202 kb on + strand, within MPMX19_04242at 590.202 kb on + strand, within MPMX19_04242at 590.202 kb on + strand, within MPMX19_04242at 590.202 kb on + strand, within MPMX19_04242at 590.202 kb on + strand, within MPMX19_04242at 590.202 kb on + strand, within MPMX19_04242at 590.202 kb on + strand, within MPMX19_04242at 590.202 kb on + strand, within MPMX19_04242at 590.202 kb on + strand, within MPMX19_04242at 590.202 kb on + strand, within MPMX19_04242at 590.202 kb on + strand, within MPMX19_04242at 590.202 kb on + strand, within MPMX19_04242at 590.202 kb on + strand, within MPMX19_04242at 590.202 kb on + strand, within MPMX19_04242at 590.202 kb on + strand, within MPMX19_04242at 590.202 kb on + strand, within MPMX19_04242at 590.202 kb on + strand, within MPMX19_04242at 590.202 kb on + strand, within MPMX19_04242at 590.202 kb on + strand, within MPMX19_04242at 590.202 kb on + strand, within MPMX19_04242at 590.202 kb on + strand, within MPMX19_04242at 590.202 kb on + strand, within MPMX19_04242at 590.202 kb on + strand, within MPMX19_04242at 590.202 kb on + strand, within MPMX19_04242at 590.202 kb on + strand, within MPMX19_04242at 590.202 kb on + strand, within MPMX19_04242at 590.202 kb on + strand, within MPMX19_04242at 590.203 kb on - strand, within MPMX19_04242at 590.203 kb on - strand, within MPMX19_04242at 590.203 kb on - strand, within MPMX19_04242at 590.203 kb on - strand, within MPMX19_04242at 590.203 kb on - strand, within MPMX19_04242at 590.203 kb on - strand, within MPMX19_04242at 590.203 kb on - strand, within MPMX19_04242at 590.203 kb on - strand, within MPMX19_04242at 590.203 kb on - strand, within MPMX19_04242at 590.203 kb on - strand, within MPMX19_04242at 590.203 kb on - strand, within MPMX19_04242at 590.203 kb on - strand, within MPMX19_04242at 590.203 kb on - strand, within MPMX19_04242at 590.203 kb on - strand, within MPMX19_04242at 590.203 kb on - strand, within MPMX19_04242at 590.203 kb on - strand, within MPMX19_04242at 590.203 kb on - strand, within MPMX19_04242at 590.203 kb on - strand, within MPMX19_04242at 590.203 kb on - strand, within MPMX19_04242at 590.203 kb on - strand, within MPMX19_04242at 590.203 kb on - strand, within MPMX19_04242at 590.204 kb on - strand, within MPMX19_04242at 590.283 kb on - strand, within MPMX19_04242at 590.283 kb on - strand, within MPMX19_04242at 590.400 kb on + strandat 590.401 kb on - strandat 590.437 kb on + strandat 590.437 kb on + strandat 590.437 kb on + strandat 590.437 kb on + strandat 590.437 kb on + strandat 590.437 kb on + strandat 590.437 kb on + strandat 590.437 kb on + strandat 590.437 kb on + strandat 590.437 kb on + strandat 590.437 kb on + strandat 590.437 kb on + strandat 590.437 kb on + strandat 590.437 kb on + strandat 590.437 kb on + strandat 590.438 kb on - strandat 590.438 kb on - strandat 590.438 kb on - strandat 590.438 kb on - strandat 590.438 kb on - strandat 590.438 kb on - strandat 590.438 kb on - strandat 590.840 kb on + strand, within MPMX19_04243at 590.840 kb on + strand, within MPMX19_04243at 590.840 kb on + strand, within MPMX19_04243at 590.840 kb on + strand, within MPMX19_04243at 590.841 kb on - strand, within MPMX19_04243at 590.841 kb on - strand, within MPMX19_04243at 590.841 kb on - strand, within MPMX19_04243at 590.841 kb on - strand, within MPMX19_04243at 590.841 kb on - strand, within MPMX19_04243at 590.841 kb on - strand, within MPMX19_04243at 590.841 kb on - strand, within MPMX19_04243at 590.841 kb on - strand, within MPMX19_04243at 590.841 kb on - strand, within MPMX19_04243at 590.841 kb on - strand, within MPMX19_04243at 590.841 kb on - strand, within MPMX19_04243at 590.841 kb on - strand, within MPMX19_04243at 591.070 kb on + strand, within MPMX19_04243at 591.071 kb on - strand, within MPMX19_04243at 591.206 kb on + strandat 591.206 kb on + strandat 591.206 kb on + strandat 591.206 kb on + strandat 591.207 kb on - strandat 591.207 kb on - strandat 591.207 kb on - strandat 591.207 kb on - strandat 591.207 kb on - strandat 591.241 kb on + strandat 591.241 kb on + strandat 591.241 kb on + strandat 591.242 kb on - strandat 591.242 kb on - strandat 591.267 kb on - strandat 591.267 kb on - strandat 591.361 kb on + strand, within MPMX19_04244at 591.361 kb on + strand, within MPMX19_04244at 591.361 kb on + strand, within MPMX19_04244at 591.362 kb on - strand, within MPMX19_04244at 591.362 kb on - strand, within MPMX19_04244at 591.362 kb on - strand, within MPMX19_04244at 591.362 kb on - strand, within MPMX19_04244at 591.397 kb on + strand, within MPMX19_04244at 591.398 kb on - strand, within MPMX19_04244at 591.398 kb on - strand, within MPMX19_04244at 591.440 kb on + strand, within MPMX19_04244at 591.440 kb on + strand, within MPMX19_04244at 591.440 kb on + strand, within MPMX19_04244at 591.441 kb on - strand, within MPMX19_04244at 591.441 kb on - strand, within MPMX19_04244at 591.441 kb on - strand, within MPMX19_04244at 591.441 kb on - strand, within MPMX19_04244

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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589,244 + +0.8
589,244 + -0.4
589,244 + -1.0
589,244 + -0.6
589,244 + +1.1
589,244 + +0.2
589,244 + -1.3
589,244 + +0.7
589,244 + -0.0
589,244 + -0.9
589,245 - -1.4
589,245 - +0.6
589,245 - -0.1
589,245 - -0.3
589,245 - -1.1
589,245 - -0.3
589,245 - -1.5
589,245 - +1.1
589,245 - -0.3
589,245 - -0.1
589,245 - +1.1
589,897 + MPMX19_04241 0.86 -1.3
589,897 + MPMX19_04241 0.86 -1.0
589,897 + MPMX19_04241 0.86 -0.5
589,897 + MPMX19_04241 0.86 -0.1
589,897 + MPMX19_04241 0.86 -0.9
589,897 + MPMX19_04241 0.86 -1.8
589,897 + MPMX19_04241 0.86 -1.8
589,897 + MPMX19_04241 0.86 -0.6
589,897 + MPMX19_04241 0.86 +0.4
589,897 + MPMX19_04241 0.86 +0.3
589,897 + MPMX19_04241 0.86 -1.5
589,897 + MPMX19_04241 0.86 +0.0
589,898 - MPMX19_04241 0.86 -2.0
589,898 - MPMX19_04241 0.86 -1.1
589,898 - MPMX19_04241 0.86 -2.5
589,898 - MPMX19_04241 0.86 +1.1
589,898 - MPMX19_04241 0.86 -1.1
589,898 - MPMX19_04241 0.86 -0.8
589,898 - MPMX19_04241 0.86 +1.0
589,898 - MPMX19_04241 0.86 -0.5
589,898 - MPMX19_04241 0.86 -0.6
589,898 - MPMX19_04241 0.86 +0.5
589,972 + +0.7
589,972 + -0.2
589,972 + +0.3
589,972 + +0.5
589,972 + -1.6
589,972 + -0.3
589,973 - -0.3
590,064 + MPMX19_04242 0.12 +0.1
590,064 + MPMX19_04242 0.12 +0.2
590,065 - MPMX19_04242 0.13 -1.8
590,202 + MPMX19_04242 0.44 -0.2
590,202 + MPMX19_04242 0.44 -0.1
590,202 + MPMX19_04242 0.44 -0.1
590,202 + MPMX19_04242 0.44 -0.2
590,202 + MPMX19_04242 0.44 -2.1
590,202 + MPMX19_04242 0.44 -0.4
590,202 + MPMX19_04242 0.44 -1.6
590,202 + MPMX19_04242 0.44 -0.8
590,202 + MPMX19_04242 0.44 -0.3
590,202 + MPMX19_04242 0.44 -0.8
590,202 + MPMX19_04242 0.44 +0.9
590,202 + MPMX19_04242 0.44 -1.6
590,202 + MPMX19_04242 0.44 -0.2
590,202 + MPMX19_04242 0.44 -1.7
590,202 + MPMX19_04242 0.44 -1.3
590,202 + MPMX19_04242 0.44 +0.4
590,202 + MPMX19_04242 0.44 +1.3
590,202 + MPMX19_04242 0.44 +0.7
590,202 + MPMX19_04242 0.44 -1.3
590,202 + MPMX19_04242 0.44 -0.6
590,202 + MPMX19_04242 0.44 +0.2
590,202 + MPMX19_04242 0.44 +0.9
590,202 + MPMX19_04242 0.44 +0.9
590,202 + MPMX19_04242 0.44 +0.1
590,202 + MPMX19_04242 0.44 +0.5
590,202 + MPMX19_04242 0.44 +0.2
590,202 + MPMX19_04242 0.44 -1.8
590,203 - MPMX19_04242 0.45 +1.7
590,203 - MPMX19_04242 0.45 -0.5
590,203 - MPMX19_04242 0.45 +0.4
590,203 - MPMX19_04242 0.45 +0.5
590,203 - MPMX19_04242 0.45 +0.1
590,203 - MPMX19_04242 0.45 +0.4
590,203 - MPMX19_04242 0.45 +1.2
590,203 - MPMX19_04242 0.45 +0.1
590,203 - MPMX19_04242 0.45 +0.4
590,203 - MPMX19_04242 0.45 -1.0
590,203 - MPMX19_04242 0.45 -0.8
590,203 - MPMX19_04242 0.45 -0.6
590,203 - MPMX19_04242 0.45 +0.0
590,203 - MPMX19_04242 0.45 -1.2
590,203 - MPMX19_04242 0.45 +2.9
590,203 - MPMX19_04242 0.45 -0.9
590,203 - MPMX19_04242 0.45 +0.1
590,203 - MPMX19_04242 0.45 +0.7
590,203 - MPMX19_04242 0.45 -1.0
590,203 - MPMX19_04242 0.45 -0.0
590,203 - MPMX19_04242 0.45 +0.5
590,204 - MPMX19_04242 0.45 -1.7
590,283 - MPMX19_04242 0.63 +0.1
590,283 - MPMX19_04242 0.63 +1.4
590,400 + -0.7
590,401 - +0.4
590,437 + -0.5
590,437 + -0.3
590,437 + -1.6
590,437 + -0.8
590,437 + +0.1
590,437 + -0.6
590,437 + -0.6
590,437 + -0.4
590,437 + -0.6
590,437 + -0.6
590,437 + -1.0
590,437 + -0.3
590,437 + +0.1
590,437 + -2.0
590,437 + -1.5
590,438 - +0.4
590,438 - -1.1
590,438 - -1.3
590,438 - -0.3
590,438 - +0.7
590,438 - -0.3
590,438 - +0.3
590,840 + MPMX19_04243 0.52 -0.2
590,840 + MPMX19_04243 0.52 -2.6
590,840 + MPMX19_04243 0.52 +1.1
590,840 + MPMX19_04243 0.52 +0.2
590,841 - MPMX19_04243 0.52 +1.0
590,841 - MPMX19_04243 0.52 -0.6
590,841 - MPMX19_04243 0.52 -0.2
590,841 - MPMX19_04243 0.52 +0.7
590,841 - MPMX19_04243 0.52 +0.4
590,841 - MPMX19_04243 0.52 +0.2
590,841 - MPMX19_04243 0.52 +1.0
590,841 - MPMX19_04243 0.52 -0.5
590,841 - MPMX19_04243 0.52 -1.0
590,841 - MPMX19_04243 0.52 -2.0
590,841 - MPMX19_04243 0.52 +0.2
590,841 - MPMX19_04243 0.52 -0.1
591,070 + MPMX19_04243 0.81 -0.5
591,071 - MPMX19_04243 0.81 -1.3
591,206 + -1.2
591,206 + -0.1
591,206 + +0.4
591,206 + +1.2
591,207 - +1.0
591,207 - +0.1
591,207 - +0.3
591,207 - +1.4
591,207 - -0.4
591,241 + -0.6
591,241 + -0.3
591,241 + -0.2
591,242 - -1.6
591,242 - -1.6
591,267 - -1.1
591,267 - -1.2
591,361 + MPMX19_04244 0.53 -0.4
591,361 + MPMX19_04244 0.53 -0.6
591,361 + MPMX19_04244 0.53 -2.4
591,362 - MPMX19_04244 0.53 -2.0
591,362 - MPMX19_04244 0.53 +0.1
591,362 - MPMX19_04244 0.53 +0.5
591,362 - MPMX19_04244 0.53 -2.8
591,397 + MPMX19_04244 0.69 -0.6
591,398 - MPMX19_04244 0.69 -0.6
591,398 - MPMX19_04244 0.69 -0.5
591,440 + MPMX19_04244 0.89 -0.6
591,440 + MPMX19_04244 0.89 -0.0
591,440 + MPMX19_04244 0.89 -2.3
591,441 - MPMX19_04244 0.89 +0.4
591,441 - MPMX19_04244 0.89 -2.2
591,441 - MPMX19_04244 0.89 -1.4
591,441 - MPMX19_04244 0.89 -1.3

Or see this region's nucleotide sequence