Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04159

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04158 and MPMX19_04159 are separated by 55 nucleotidesMPMX19_04159 and MPMX19_04160 are separated by 195 nucleotides MPMX19_04158: MPMX19_04158 - hypothetical protein, at 473,232 to 475,439 _04158 MPMX19_04159: MPMX19_04159 - D-inositol-3-phosphate glycosyltransferase, at 475,495 to 476,808 _04159 MPMX19_04160: MPMX19_04160 - hypothetical protein, at 477,004 to 478,191 _04160 Position (kb) 475 476 477Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 474.811 kb on - strand, within MPMX19_04158at 474.811 kb on - strand, within MPMX19_04158at 475.035 kb on + strand, within MPMX19_04158at 475.035 kb on + strand, within MPMX19_04158at 475.035 kb on + strand, within MPMX19_04158at 475.035 kb on + strand, within MPMX19_04158at 475.035 kb on + strand, within MPMX19_04158at 475.035 kb on + strand, within MPMX19_04158at 475.035 kb on + strand, within MPMX19_04158at 475.035 kb on + strand, within MPMX19_04158at 475.036 kb on - strand, within MPMX19_04158at 475.036 kb on - strand, within MPMX19_04158at 475.036 kb on - strand, within MPMX19_04158at 475.036 kb on - strand, within MPMX19_04158at 475.036 kb on - strand, within MPMX19_04158at 475.036 kb on - strand, within MPMX19_04158at 475.036 kb on - strand, within MPMX19_04158at 475.036 kb on - strand, within MPMX19_04158at 475.036 kb on - strand, within MPMX19_04158at 475.036 kb on - strand, within MPMX19_04158at 475.101 kb on + strand, within MPMX19_04158at 475.101 kb on + strand, within MPMX19_04158at 475.101 kb on + strand, within MPMX19_04158at 475.101 kb on + strand, within MPMX19_04158at 475.102 kb on - strand, within MPMX19_04158at 475.102 kb on - strand, within MPMX19_04158at 475.237 kb on - strandat 475.295 kb on + strandat 475.295 kb on + strandat 475.296 kb on - strandat 475.296 kb on - strandat 475.437 kb on + strandat 475.438 kb on - strandat 475.438 kb on - strandat 475.438 kb on - strandat 475.438 kb on - strandat 475.573 kb on + strandat 475.573 kb on + strandat 475.573 kb on + strandat 475.573 kb on + strandat 475.573 kb on + strandat 475.573 kb on + strandat 475.574 kb on - strandat 475.574 kb on - strandat 475.574 kb on - strandat 475.574 kb on - strandat 475.574 kb on - strandat 475.574 kb on - strandat 475.574 kb on - strandat 475.574 kb on - strandat 475.574 kb on - strandat 475.574 kb on - strandat 475.621 kb on + strandat 475.621 kb on + strandat 475.621 kb on + strandat 475.621 kb on + strandat 475.621 kb on + strandat 475.622 kb on - strandat 475.622 kb on - strandat 475.622 kb on - strandat 475.622 kb on - strandat 475.622 kb on - strandat 475.622 kb on - strandat 475.622 kb on - strandat 475.622 kb on - strandat 475.622 kb on - strandat 475.622 kb on - strandat 475.705 kb on + strand, within MPMX19_04159at 475.705 kb on + strand, within MPMX19_04159at 475.705 kb on + strand, within MPMX19_04159at 475.705 kb on + strand, within MPMX19_04159at 475.705 kb on + strand, within MPMX19_04159at 475.705 kb on + strand, within MPMX19_04159at 475.705 kb on + strand, within MPMX19_04159at 475.706 kb on - strand, within MPMX19_04159at 475.706 kb on - strand, within MPMX19_04159at 475.706 kb on - strand, within MPMX19_04159at 475.706 kb on - strand, within MPMX19_04159at 475.706 kb on - strand, within MPMX19_04159at 475.708 kb on + strand, within MPMX19_04159at 475.708 kb on + strand, within MPMX19_04159at 475.708 kb on + strand, within MPMX19_04159at 475.708 kb on + strand, within MPMX19_04159at 475.708 kb on + strand, within MPMX19_04159at 475.709 kb on - strand, within MPMX19_04159at 475.709 kb on - strand, within MPMX19_04159at 475.720 kb on + strand, within MPMX19_04159at 475.720 kb on + strand, within MPMX19_04159at 475.720 kb on + strand, within MPMX19_04159at 475.720 kb on + strand, within MPMX19_04159at 475.720 kb on + strand, within MPMX19_04159at 475.720 kb on + strand, within MPMX19_04159at 475.721 kb on - strand, within MPMX19_04159at 475.721 kb on - strand, within MPMX19_04159at 475.721 kb on - strand, within MPMX19_04159at 475.780 kb on + strand, within MPMX19_04159at 475.780 kb on + strand, within MPMX19_04159at 475.780 kb on + strand, within MPMX19_04159at 475.781 kb on - strand, within MPMX19_04159at 475.781 kb on - strand, within MPMX19_04159at 475.781 kb on - strand, within MPMX19_04159at 475.781 kb on - strand, within MPMX19_04159at 475.781 kb on - strand, within MPMX19_04159at 475.781 kb on - strand, within MPMX19_04159at 475.903 kb on + strand, within MPMX19_04159at 475.903 kb on + strand, within MPMX19_04159at 475.903 kb on + strand, within MPMX19_04159at 475.903 kb on + strand, within MPMX19_04159at 475.903 kb on + strand, within MPMX19_04159at 475.903 kb on + strand, within MPMX19_04159at 475.903 kb on + strand, within MPMX19_04159at 475.903 kb on + strand, within MPMX19_04159at 475.903 kb on + strand, within MPMX19_04159at 475.903 kb on + strand, within MPMX19_04159at 475.903 kb on + strand, within MPMX19_04159at 475.903 kb on + strand, within MPMX19_04159at 475.903 kb on + strand, within MPMX19_04159at 475.903 kb on + strand, within MPMX19_04159at 475.903 kb on + strand, within MPMX19_04159at 475.904 kb on - strand, within MPMX19_04159at 475.904 kb on - strand, within MPMX19_04159at 475.904 kb on - strand, within MPMX19_04159at 475.904 kb on - strand, within MPMX19_04159at 475.904 kb on - strand, within MPMX19_04159at 475.904 kb on - strand, within MPMX19_04159at 475.904 kb on - strand, within MPMX19_04159at 475.904 kb on - strand, within MPMX19_04159at 475.904 kb on - strand, within MPMX19_04159at 475.904 kb on - strand, within MPMX19_04159at 475.904 kb on - strand, within MPMX19_04159at 475.904 kb on - strand, within MPMX19_04159at 475.904 kb on - strand, within MPMX19_04159at 475.904 kb on - strand, within MPMX19_04159at 475.904 kb on - strand, within MPMX19_04159at 475.904 kb on - strand, within MPMX19_04159at 475.904 kb on - strand, within MPMX19_04159at 476.071 kb on + strand, within MPMX19_04159at 476.071 kb on + strand, within MPMX19_04159at 476.071 kb on + strand, within MPMX19_04159at 476.071 kb on + strand, within MPMX19_04159at 476.071 kb on + strand, within MPMX19_04159at 476.071 kb on + strand, within MPMX19_04159at 476.072 kb on - strand, within MPMX19_04159at 476.072 kb on - strand, within MPMX19_04159at 476.072 kb on - strand, within MPMX19_04159at 476.072 kb on - strand, within MPMX19_04159at 476.072 kb on - strand, within MPMX19_04159at 476.072 kb on - strand, within MPMX19_04159at 476.104 kb on + strand, within MPMX19_04159at 476.105 kb on - strand, within MPMX19_04159at 476.356 kb on + strand, within MPMX19_04159at 476.356 kb on + strand, within MPMX19_04159at 476.356 kb on + strand, within MPMX19_04159at 476.357 kb on - strand, within MPMX19_04159at 476.410 kb on + strand, within MPMX19_04159at 476.410 kb on + strand, within MPMX19_04159at 476.411 kb on - strand, within MPMX19_04159at 476.419 kb on + strand, within MPMX19_04159at 476.419 kb on + strand, within MPMX19_04159at 476.419 kb on + strand, within MPMX19_04159at 476.419 kb on + strand, within MPMX19_04159at 476.420 kb on - strand, within MPMX19_04159at 476.420 kb on - strand, within MPMX19_04159at 476.806 kb on + strandat 476.852 kb on + strandat 476.853 kb on - strandat 476.855 kb on + strandat 476.876 kb on + strandat 476.976 kb on - strandat 477.043 kb on + strandat 477.043 kb on + strandat 477.044 kb on - strandat 477.044 kb on - strandat 477.067 kb on + strandat 477.073 kb on + strandat 477.073 kb on + strandat 477.073 kb on + strandat 477.074 kb on - strandat 477.103 kb on + strandat 477.157 kb on + strand, within MPMX19_04160at 477.157 kb on + strand, within MPMX19_04160at 477.157 kb on + strand, within MPMX19_04160at 477.158 kb on - strand, within MPMX19_04160at 477.158 kb on - strand, within MPMX19_04160at 477.226 kb on + strand, within MPMX19_04160at 477.226 kb on + strand, within MPMX19_04160at 477.226 kb on + strand, within MPMX19_04160at 477.226 kb on + strand, within MPMX19_04160at 477.226 kb on + strand, within MPMX19_04160at 477.226 kb on + strand, within MPMX19_04160at 477.226 kb on + strand, within MPMX19_04160at 477.232 kb on + strand, within MPMX19_04160at 477.232 kb on + strand, within MPMX19_04160at 477.232 kb on + strand, within MPMX19_04160at 477.232 kb on + strand, within MPMX19_04160at 477.233 kb on - strand, within MPMX19_04160at 477.256 kb on + strand, within MPMX19_04160at 477.256 kb on + strand, within MPMX19_04160at 477.256 kb on + strand, within MPMX19_04160at 477.256 kb on + strand, within MPMX19_04160at 477.256 kb on + strand, within MPMX19_04160at 477.256 kb on + strand, within MPMX19_04160at 477.256 kb on + strand, within MPMX19_04160at 477.256 kb on + strand, within MPMX19_04160at 477.256 kb on + strand, within MPMX19_04160at 477.256 kb on + strand, within MPMX19_04160at 477.256 kb on + strand, within MPMX19_04160at 477.256 kb on + strand, within MPMX19_04160at 477.257 kb on - strand, within MPMX19_04160at 477.257 kb on - strand, within MPMX19_04160at 477.257 kb on - strand, within MPMX19_04160at 477.257 kb on - strand, within MPMX19_04160at 477.257 kb on - strand, within MPMX19_04160at 477.445 kb on + strand, within MPMX19_04160at 477.445 kb on + strand, within MPMX19_04160at 477.445 kb on + strand, within MPMX19_04160at 477.445 kb on + strand, within MPMX19_04160at 477.445 kb on + strand, within MPMX19_04160at 477.445 kb on + strand, within MPMX19_04160at 477.445 kb on + strand, within MPMX19_04160at 477.445 kb on + strand, within MPMX19_04160at 477.445 kb on + strand, within MPMX19_04160at 477.445 kb on + strand, within MPMX19_04160at 477.445 kb on + strand, within MPMX19_04160at 477.445 kb on + strand, within MPMX19_04160at 477.446 kb on - strand, within MPMX19_04160at 477.446 kb on - strand, within MPMX19_04160at 477.446 kb on - strand, within MPMX19_04160at 477.607 kb on + strand, within MPMX19_04160at 477.607 kb on + strand, within MPMX19_04160at 477.608 kb on - strand, within MPMX19_04160at 477.628 kb on + strand, within MPMX19_04160at 477.629 kb on - strand, within MPMX19_04160at 477.793 kb on + strand, within MPMX19_04160at 477.793 kb on + strand, within MPMX19_04160at 477.794 kb on - strand, within MPMX19_04160at 477.794 kb on - strand, within MPMX19_04160at 477.794 kb on - strand, within MPMX19_04160

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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474,811 - MPMX19_04158 0.72 -0.8
474,811 - MPMX19_04158 0.72 -1.5
475,035 + MPMX19_04158 0.82 +1.1
475,035 + MPMX19_04158 0.82 -0.4
475,035 + MPMX19_04158 0.82 +0.1
475,035 + MPMX19_04158 0.82 +0.4
475,035 + MPMX19_04158 0.82 -0.3
475,035 + MPMX19_04158 0.82 +1.3
475,035 + MPMX19_04158 0.82 +0.5
475,035 + MPMX19_04158 0.82 -0.3
475,036 - MPMX19_04158 0.82 -0.5
475,036 - MPMX19_04158 0.82 -1.5
475,036 - MPMX19_04158 0.82 -1.7
475,036 - MPMX19_04158 0.82 -1.0
475,036 - MPMX19_04158 0.82 +0.3
475,036 - MPMX19_04158 0.82 -0.5
475,036 - MPMX19_04158 0.82 -0.8
475,036 - MPMX19_04158 0.82 -0.6
475,036 - MPMX19_04158 0.82 -0.9
475,036 - MPMX19_04158 0.82 +1.3
475,101 + MPMX19_04158 0.85 -0.5
475,101 + MPMX19_04158 0.85 -0.9
475,101 + MPMX19_04158 0.85 -0.7
475,101 + MPMX19_04158 0.85 -0.3
475,102 - MPMX19_04158 0.85 +0.3
475,102 - MPMX19_04158 0.85 -0.2
475,237 - +0.5
475,295 + -0.7
475,295 + -0.3
475,296 - +0.2
475,296 - +0.0
475,437 + -0.3
475,438 - +0.2
475,438 - +0.2
475,438 - -0.1
475,438 - +0.1
475,573 + +0.9
475,573 + -0.9
475,573 + +2.3
475,573 + -1.3
475,573 + -1.3
475,573 + +0.2
475,574 - +1.1
475,574 - +0.7
475,574 - -0.3
475,574 - +0.8
475,574 - -1.1
475,574 - -1.2
475,574 - -1.3
475,574 - -2.3
475,574 - -0.4
475,574 - -0.7
475,621 + +0.7
475,621 + +0.9
475,621 + -1.1
475,621 + -0.5
475,621 + -0.9
475,622 - -1.9
475,622 - -1.7
475,622 - -1.8
475,622 - -0.8
475,622 - +0.0
475,622 - +0.1
475,622 - +0.1
475,622 - +0.0
475,622 - +0.2
475,622 - +0.4
475,705 + MPMX19_04159 0.16 +0.8
475,705 + MPMX19_04159 0.16 -1.3
475,705 + MPMX19_04159 0.16 -0.4
475,705 + MPMX19_04159 0.16 -0.0
475,705 + MPMX19_04159 0.16 -0.3
475,705 + MPMX19_04159 0.16 +1.0
475,705 + MPMX19_04159 0.16 -0.6
475,706 - MPMX19_04159 0.16 +0.1
475,706 - MPMX19_04159 0.16 +0.2
475,706 - MPMX19_04159 0.16 +1.1
475,706 - MPMX19_04159 0.16 -1.8
475,706 - MPMX19_04159 0.16 +0.8
475,708 + MPMX19_04159 0.16 -2.9
475,708 + MPMX19_04159 0.16 -1.0
475,708 + MPMX19_04159 0.16 -0.9
475,708 + MPMX19_04159 0.16 +0.8
475,708 + MPMX19_04159 0.16 -0.5
475,709 - MPMX19_04159 0.16 -0.3
475,709 - MPMX19_04159 0.16 +0.4
475,720 + MPMX19_04159 0.17 -1.1
475,720 + MPMX19_04159 0.17 +0.9
475,720 + MPMX19_04159 0.17 -0.8
475,720 + MPMX19_04159 0.17 +0.3
475,720 + MPMX19_04159 0.17 +0.7
475,720 + MPMX19_04159 0.17 -0.1
475,721 - MPMX19_04159 0.17 -0.3
475,721 - MPMX19_04159 0.17 -0.3
475,721 - MPMX19_04159 0.17 -1.3
475,780 + MPMX19_04159 0.22 +1.7
475,780 + MPMX19_04159 0.22 +0.4
475,780 + MPMX19_04159 0.22 +0.1
475,781 - MPMX19_04159 0.22 -0.3
475,781 - MPMX19_04159 0.22 -0.8
475,781 - MPMX19_04159 0.22 +0.8
475,781 - MPMX19_04159 0.22 +0.5
475,781 - MPMX19_04159 0.22 +1.7
475,781 - MPMX19_04159 0.22 -0.7
475,903 + MPMX19_04159 0.31 -1.5
475,903 + MPMX19_04159 0.31 -0.6
475,903 + MPMX19_04159 0.31 -0.9
475,903 + MPMX19_04159 0.31 -0.9
475,903 + MPMX19_04159 0.31 -1.1
475,903 + MPMX19_04159 0.31 -1.5
475,903 + MPMX19_04159 0.31 +0.7
475,903 + MPMX19_04159 0.31 -1.2
475,903 + MPMX19_04159 0.31 -0.3
475,903 + MPMX19_04159 0.31 -0.1
475,903 + MPMX19_04159 0.31 +0.3
475,903 + MPMX19_04159 0.31 -1.3
475,903 + MPMX19_04159 0.31 +0.2
475,903 + MPMX19_04159 0.31 +0.7
475,903 + MPMX19_04159 0.31 +0.5
475,904 - MPMX19_04159 0.31 +0.1
475,904 - MPMX19_04159 0.31 +0.3
475,904 - MPMX19_04159 0.31 -0.7
475,904 - MPMX19_04159 0.31 -1.8
475,904 - MPMX19_04159 0.31 -0.7
475,904 - MPMX19_04159 0.31 -0.6
475,904 - MPMX19_04159 0.31 +0.1
475,904 - MPMX19_04159 0.31 +0.2
475,904 - MPMX19_04159 0.31 -0.3
475,904 - MPMX19_04159 0.31 +0.3
475,904 - MPMX19_04159 0.31 +1.1
475,904 - MPMX19_04159 0.31 +0.3
475,904 - MPMX19_04159 0.31 +1.4
475,904 - MPMX19_04159 0.31 +0.7
475,904 - MPMX19_04159 0.31 -2.0
475,904 - MPMX19_04159 0.31 -1.1
475,904 - MPMX19_04159 0.31 +0.2
476,071 + MPMX19_04159 0.44 -1.0
476,071 + MPMX19_04159 0.44 -0.0
476,071 + MPMX19_04159 0.44 +0.3
476,071 + MPMX19_04159 0.44 +0.3
476,071 + MPMX19_04159 0.44 +1.1
476,071 + MPMX19_04159 0.44 -1.1
476,072 - MPMX19_04159 0.44 +1.9
476,072 - MPMX19_04159 0.44 -0.6
476,072 - MPMX19_04159 0.44 +0.2
476,072 - MPMX19_04159 0.44 -0.1
476,072 - MPMX19_04159 0.44 +0.3
476,072 - MPMX19_04159 0.44 -1.0
476,104 + MPMX19_04159 0.46 -1.3
476,105 - MPMX19_04159 0.46 +0.0
476,356 + MPMX19_04159 0.66 +0.1
476,356 + MPMX19_04159 0.66 -1.3
476,356 + MPMX19_04159 0.66 -0.8
476,357 - MPMX19_04159 0.66 -0.2
476,410 + MPMX19_04159 0.70 -0.4
476,410 + MPMX19_04159 0.70 +1.1
476,411 - MPMX19_04159 0.70 -0.9
476,419 + MPMX19_04159 0.70 -0.7
476,419 + MPMX19_04159 0.70 +0.7
476,419 + MPMX19_04159 0.70 -1.1
476,419 + MPMX19_04159 0.70 -0.5
476,420 - MPMX19_04159 0.70 -1.4
476,420 - MPMX19_04159 0.70 +1.0
476,806 + -1.9
476,852 + -0.7
476,853 - -2.1
476,855 + -0.3
476,876 + +0.7
476,976 - +1.8
477,043 + -1.1
477,043 + -0.7
477,044 - +0.5
477,044 - -0.9
477,067 + +1.2
477,073 + -1.1
477,073 + -1.5
477,073 + -1.5
477,074 - -1.1
477,103 + +0.0
477,157 + MPMX19_04160 0.13 -1.1
477,157 + MPMX19_04160 0.13 -0.6
477,157 + MPMX19_04160 0.13 +0.1
477,158 - MPMX19_04160 0.13 -0.7
477,158 - MPMX19_04160 0.13 -0.5
477,226 + MPMX19_04160 0.19 +0.2
477,226 + MPMX19_04160 0.19 +0.5
477,226 + MPMX19_04160 0.19 -0.9
477,226 + MPMX19_04160 0.19 -1.2
477,226 + MPMX19_04160 0.19 -0.3
477,226 + MPMX19_04160 0.19 -0.5
477,226 + MPMX19_04160 0.19 -0.4
477,232 + MPMX19_04160 0.19 -1.0
477,232 + MPMX19_04160 0.19 +0.0
477,232 + MPMX19_04160 0.19 +1.7
477,232 + MPMX19_04160 0.19 -0.1
477,233 - MPMX19_04160 0.19 -0.8
477,256 + MPMX19_04160 0.21 -0.8
477,256 + MPMX19_04160 0.21 -1.1
477,256 + MPMX19_04160 0.21 +0.3
477,256 + MPMX19_04160 0.21 +0.8
477,256 + MPMX19_04160 0.21 -0.1
477,256 + MPMX19_04160 0.21 -0.0
477,256 + MPMX19_04160 0.21 -0.8
477,256 + MPMX19_04160 0.21 +0.5
477,256 + MPMX19_04160 0.21 -1.4
477,256 + MPMX19_04160 0.21 -0.2
477,256 + MPMX19_04160 0.21 -1.7
477,256 + MPMX19_04160 0.21 +0.4
477,257 - MPMX19_04160 0.21 -1.1
477,257 - MPMX19_04160 0.21 -0.0
477,257 - MPMX19_04160 0.21 +0.9
477,257 - MPMX19_04160 0.21 -0.1
477,257 - MPMX19_04160 0.21 +0.4
477,445 + MPMX19_04160 0.37 -0.7
477,445 + MPMX19_04160 0.37 -0.5
477,445 + MPMX19_04160 0.37 -0.5
477,445 + MPMX19_04160 0.37 -0.2
477,445 + MPMX19_04160 0.37 +0.2
477,445 + MPMX19_04160 0.37 -0.0
477,445 + MPMX19_04160 0.37 -0.2
477,445 + MPMX19_04160 0.37 -1.1
477,445 + MPMX19_04160 0.37 -1.1
477,445 + MPMX19_04160 0.37 +0.5
477,445 + MPMX19_04160 0.37 -0.5
477,445 + MPMX19_04160 0.37 +0.4
477,446 - MPMX19_04160 0.37 -1.5
477,446 - MPMX19_04160 0.37 -0.1
477,446 - MPMX19_04160 0.37 -0.5
477,607 + MPMX19_04160 0.51 -1.5
477,607 + MPMX19_04160 0.51 -2.0
477,608 - MPMX19_04160 0.51 +1.7
477,628 + MPMX19_04160 0.53 -2.0
477,629 - MPMX19_04160 0.53 +0.2
477,793 + MPMX19_04160 0.66 +0.7
477,793 + MPMX19_04160 0.66 -0.1
477,794 - MPMX19_04160 0.66 +1.1
477,794 - MPMX19_04160 0.66 -1.1
477,794 - MPMX19_04160 0.66 +0.1

Or see this region's nucleotide sequence