Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04151

Experiment: NL-CCM, start OD=0.1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_04149 and MPMX19_04150 are separated by 13 nucleotidesMPMX19_04150 and MPMX19_04151 are separated by 51 nucleotidesMPMX19_04151 and MPMX19_04152 are separated by 548 nucleotides MPMX19_04149: MPMX19_04149 - hypothetical protein, at 460,583 to 461,809 _04149 MPMX19_04150: MPMX19_04150 - hypothetical protein, at 461,823 to 462,395 _04150 MPMX19_04151: MPMX19_04151 - UDP-glucose 4-epimerase, at 462,447 to 463,460 _04151 MPMX19_04152: MPMX19_04152 - Type I secretion system ATP-binding protein PrsD, at 464,009 to 465,745 _04152 Position (kb) 462 463 464Strain fitness (log2 ratio) -2 -1 0 1at 461.781 kb on + strandat 461.782 kb on - strandat 461.782 kb on - strandat 461.845 kb on + strandat 461.846 kb on - strandat 461.893 kb on + strand, within MPMX19_04150at 461.893 kb on + strand, within MPMX19_04150at 461.893 kb on + strand, within MPMX19_04150at 461.893 kb on + strand, within MPMX19_04150at 461.893 kb on + strand, within MPMX19_04150at 461.894 kb on - strand, within MPMX19_04150at 461.894 kb on - strand, within MPMX19_04150at 462.052 kb on + strand, within MPMX19_04150at 462.052 kb on + strand, within MPMX19_04150at 462.052 kb on + strand, within MPMX19_04150at 462.052 kb on + strand, within MPMX19_04150at 462.052 kb on + strand, within MPMX19_04150at 462.053 kb on - strand, within MPMX19_04150at 462.053 kb on - strand, within MPMX19_04150at 462.082 kb on + strand, within MPMX19_04150at 462.082 kb on + strand, within MPMX19_04150at 462.082 kb on + strand, within MPMX19_04150at 462.082 kb on + strand, within MPMX19_04150at 462.082 kb on + strand, within MPMX19_04150at 462.083 kb on - strand, within MPMX19_04150at 462.083 kb on - strand, within MPMX19_04150at 462.083 kb on - strand, within MPMX19_04150at 462.083 kb on - strand, within MPMX19_04150at 462.083 kb on - strand, within MPMX19_04150at 462.083 kb on - strand, within MPMX19_04150at 462.103 kb on + strand, within MPMX19_04150at 462.103 kb on + strand, within MPMX19_04150at 462.103 kb on + strand, within MPMX19_04150at 462.103 kb on + strand, within MPMX19_04150at 462.103 kb on + strand, within MPMX19_04150at 462.103 kb on + strand, within MPMX19_04150at 462.103 kb on + strand, within MPMX19_04150at 462.103 kb on + strand, within MPMX19_04150at 462.103 kb on + strand, within MPMX19_04150at 462.103 kb on + strand, within MPMX19_04150at 462.104 kb on - strand, within MPMX19_04150at 462.104 kb on - strand, within MPMX19_04150at 462.104 kb on - strand, within MPMX19_04150at 462.104 kb on - strand, within MPMX19_04150at 462.104 kb on - strand, within MPMX19_04150at 462.104 kb on - strand, within MPMX19_04150at 462.104 kb on - strand, within MPMX19_04150at 462.104 kb on - strand, within MPMX19_04150at 462.104 kb on - strand, within MPMX19_04150at 462.104 kb on - strand, within MPMX19_04150at 462.104 kb on - strand, within MPMX19_04150at 462.104 kb on - strand, within MPMX19_04150at 462.104 kb on - strand, within MPMX19_04150at 462.104 kb on - strand, within MPMX19_04150at 462.104 kb on - strand, within MPMX19_04150at 462.106 kb on + strand, within MPMX19_04150at 462.107 kb on - strand, within MPMX19_04150at 462.107 kb on - strand, within MPMX19_04150at 462.107 kb on - strand, within MPMX19_04150at 462.107 kb on - strand, within MPMX19_04150at 462.107 kb on - strand, within MPMX19_04150at 462.232 kb on + strand, within MPMX19_04150at 462.232 kb on + strand, within MPMX19_04150at 462.341 kb on + strandat 462.342 kb on - strandat 462.431 kb on - strandat 462.685 kb on + strand, within MPMX19_04151at 462.685 kb on + strand, within MPMX19_04151at 462.685 kb on + strand, within MPMX19_04151at 462.686 kb on - strand, within MPMX19_04151at 462.709 kb on + strand, within MPMX19_04151at 462.709 kb on + strand, within MPMX19_04151at 462.709 kb on + strand, within MPMX19_04151at 462.709 kb on + strand, within MPMX19_04151at 462.710 kb on - strand, within MPMX19_04151at 462.781 kb on + strand, within MPMX19_04151at 462.781 kb on + strand, within MPMX19_04151at 462.781 kb on + strand, within MPMX19_04151at 462.781 kb on + strand, within MPMX19_04151at 462.781 kb on + strand, within MPMX19_04151at 462.781 kb on + strand, within MPMX19_04151at 462.781 kb on + strand, within MPMX19_04151at 462.781 kb on + strand, within MPMX19_04151at 462.782 kb on - strand, within MPMX19_04151at 462.782 kb on - strand, within MPMX19_04151at 462.782 kb on - strand, within MPMX19_04151at 462.782 kb on - strand, within MPMX19_04151at 462.782 kb on - strand, within MPMX19_04151at 462.782 kb on - strand, within MPMX19_04151at 462.782 kb on - strand, within MPMX19_04151at 462.782 kb on - strand, within MPMX19_04151at 462.782 kb on - strand, within MPMX19_04151at 462.782 kb on - strand, within MPMX19_04151at 462.782 kb on - strand, within MPMX19_04151at 462.782 kb on - strand, within MPMX19_04151at 462.782 kb on - strand, within MPMX19_04151at 462.782 kb on - strand, within MPMX19_04151at 462.782 kb on - strand, within MPMX19_04151at 462.782 kb on - strand, within MPMX19_04151at 462.814 kb on + strand, within MPMX19_04151at 462.814 kb on + strand, within MPMX19_04151at 462.814 kb on + strand, within MPMX19_04151at 462.814 kb on + strand, within MPMX19_04151at 462.814 kb on + strand, within MPMX19_04151at 462.815 kb on - strand, within MPMX19_04151at 462.815 kb on - strand, within MPMX19_04151at 462.815 kb on - strand, within MPMX19_04151at 462.815 kb on - strand, within MPMX19_04151at 462.815 kb on - strand, within MPMX19_04151at 462.946 kb on + strand, within MPMX19_04151at 462.946 kb on + strand, within MPMX19_04151at 462.947 kb on - strand, within MPMX19_04151at 462.947 kb on - strand, within MPMX19_04151at 463.183 kb on + strand, within MPMX19_04151at 463.183 kb on + strand, within MPMX19_04151at 463.183 kb on + strand, within MPMX19_04151at 463.183 kb on + strand, within MPMX19_04151at 463.184 kb on - strand, within MPMX19_04151at 463.184 kb on - strand, within MPMX19_04151at 463.184 kb on - strand, within MPMX19_04151at 463.417 kb on + strandat 463.417 kb on + strandat 463.417 kb on + strandat 463.417 kb on + strandat 463.418 kb on - strandat 463.418 kb on - strandat 463.418 kb on - strandat 463.418 kb on - strandat 463.418 kb on - strandat 463.418 kb on - strandat 463.418 kb on - strandat 463.418 kb on - strandat 463.713 kb on + strandat 463.713 kb on + strandat 463.713 kb on + strandat 463.713 kb on + strandat 463.713 kb on + strandat 463.713 kb on + strandat 463.714 kb on - strandat 463.714 kb on - strandat 463.714 kb on - strandat 463.714 kb on - strandat 463.714 kb on - strandat 463.714 kb on - strandat 463.799 kb on - strandat 463.799 kb on - strandat 463.805 kb on + strandat 463.805 kb on + strandat 463.805 kb on + strandat 463.805 kb on + strandat 463.805 kb on + strandat 463.805 kb on + strandat 463.806 kb on - strandat 463.858 kb on + strandat 463.858 kb on + strandat 463.859 kb on - strandat 463.859 kb on - strandat 463.859 kb on - strandat 463.859 kb on - strandat 464.045 kb on + strandat 464.046 kb on - strandat 464.141 kb on + strandat 464.141 kb on + strandat 464.141 kb on + strandat 464.142 kb on - strandat 464.142 kb on - strandat 464.142 kb on - strandat 464.142 kb on - strandat 464.142 kb on - strandat 464.142 kb on - strandat 464.142 kb on - strandat 464.142 kb on - strandat 464.219 kb on + strand, within MPMX19_04152at 464.219 kb on + strand, within MPMX19_04152at 464.219 kb on + strand, within MPMX19_04152at 464.219 kb on + strand, within MPMX19_04152at 464.220 kb on - strand, within MPMX19_04152at 464.220 kb on - strand, within MPMX19_04152

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
remove
461,781 + -1.1
461,782 - +0.8
461,782 - +0.8
461,845 + +0.3
461,846 - -0.4
461,893 + MPMX19_04150 0.12 -1.1
461,893 + MPMX19_04150 0.12 -0.6
461,893 + MPMX19_04150 0.12 +0.8
461,893 + MPMX19_04150 0.12 -1.9
461,893 + MPMX19_04150 0.12 +0.5
461,894 - MPMX19_04150 0.12 -0.7
461,894 - MPMX19_04150 0.12 +0.1
462,052 + MPMX19_04150 0.40 -0.4
462,052 + MPMX19_04150 0.40 +1.0
462,052 + MPMX19_04150 0.40 -0.5
462,052 + MPMX19_04150 0.40 -2.1
462,052 + MPMX19_04150 0.40 -1.1
462,053 - MPMX19_04150 0.40 -1.5
462,053 - MPMX19_04150 0.40 -2.7
462,082 + MPMX19_04150 0.45 +0.6
462,082 + MPMX19_04150 0.45 +1.7
462,082 + MPMX19_04150 0.45 -0.5
462,082 + MPMX19_04150 0.45 -1.0
462,082 + MPMX19_04150 0.45 -0.7
462,083 - MPMX19_04150 0.45 -1.4
462,083 - MPMX19_04150 0.45 -0.2
462,083 - MPMX19_04150 0.45 +1.7
462,083 - MPMX19_04150 0.45 -0.3
462,083 - MPMX19_04150 0.45 -0.9
462,083 - MPMX19_04150 0.45 +0.3
462,103 + MPMX19_04150 0.49 -0.1
462,103 + MPMX19_04150 0.49 +0.7
462,103 + MPMX19_04150 0.49 -0.5
462,103 + MPMX19_04150 0.49 -0.7
462,103 + MPMX19_04150 0.49 -0.8
462,103 + MPMX19_04150 0.49 +0.3
462,103 + MPMX19_04150 0.49 -0.2
462,103 + MPMX19_04150 0.49 -1.5
462,103 + MPMX19_04150 0.49 +0.4
462,103 + MPMX19_04150 0.49 -1.1
462,104 - MPMX19_04150 0.49 -0.3
462,104 - MPMX19_04150 0.49 -0.8
462,104 - MPMX19_04150 0.49 -0.5
462,104 - MPMX19_04150 0.49 +0.1
462,104 - MPMX19_04150 0.49 +0.7
462,104 - MPMX19_04150 0.49 -0.7
462,104 - MPMX19_04150 0.49 +0.2
462,104 - MPMX19_04150 0.49 -0.9
462,104 - MPMX19_04150 0.49 -1.9
462,104 - MPMX19_04150 0.49 +0.3
462,104 - MPMX19_04150 0.49 -0.8
462,104 - MPMX19_04150 0.49 +0.3
462,104 - MPMX19_04150 0.49 -0.5
462,104 - MPMX19_04150 0.49 +0.4
462,104 - MPMX19_04150 0.49 -0.3
462,106 + MPMX19_04150 0.49 +0.5
462,107 - MPMX19_04150 0.50 -1.5
462,107 - MPMX19_04150 0.50 -0.3
462,107 - MPMX19_04150 0.50 -0.3
462,107 - MPMX19_04150 0.50 -1.3
462,107 - MPMX19_04150 0.50 -1.7
462,232 + MPMX19_04150 0.71 -1.2
462,232 + MPMX19_04150 0.71 +0.5
462,341 + -0.7
462,342 - -0.7
462,431 - +0.1
462,685 + MPMX19_04151 0.23 +0.3
462,685 + MPMX19_04151 0.23 +0.7
462,685 + MPMX19_04151 0.23 +0.7
462,686 - MPMX19_04151 0.24 -1.1
462,709 + MPMX19_04151 0.26 -0.1
462,709 + MPMX19_04151 0.26 -2.1
462,709 + MPMX19_04151 0.26 -1.9
462,709 + MPMX19_04151 0.26 -0.5
462,710 - MPMX19_04151 0.26 -1.0
462,781 + MPMX19_04151 0.33 -0.4
462,781 + MPMX19_04151 0.33 +0.1
462,781 + MPMX19_04151 0.33 +0.1
462,781 + MPMX19_04151 0.33 -1.0
462,781 + MPMX19_04151 0.33 -0.1
462,781 + MPMX19_04151 0.33 -1.7
462,781 + MPMX19_04151 0.33 -1.7
462,781 + MPMX19_04151 0.33 +0.8
462,782 - MPMX19_04151 0.33 -0.4
462,782 - MPMX19_04151 0.33 -0.7
462,782 - MPMX19_04151 0.33 -0.3
462,782 - MPMX19_04151 0.33 -2.4
462,782 - MPMX19_04151 0.33 -1.3
462,782 - MPMX19_04151 0.33 -1.4
462,782 - MPMX19_04151 0.33 -1.5
462,782 - MPMX19_04151 0.33 -0.5
462,782 - MPMX19_04151 0.33 -0.9
462,782 - MPMX19_04151 0.33 +0.1
462,782 - MPMX19_04151 0.33 +0.3
462,782 - MPMX19_04151 0.33 +0.3
462,782 - MPMX19_04151 0.33 -0.9
462,782 - MPMX19_04151 0.33 -0.6
462,782 - MPMX19_04151 0.33 -0.0
462,782 - MPMX19_04151 0.33 -1.3
462,814 + MPMX19_04151 0.36 -1.2
462,814 + MPMX19_04151 0.36 -0.7
462,814 + MPMX19_04151 0.36 +0.8
462,814 + MPMX19_04151 0.36 +0.1
462,814 + MPMX19_04151 0.36 -0.2
462,815 - MPMX19_04151 0.36 -0.1
462,815 - MPMX19_04151 0.36 -0.7
462,815 - MPMX19_04151 0.36 +0.5
462,815 - MPMX19_04151 0.36 -1.5
462,815 - MPMX19_04151 0.36 -1.3
462,946 + MPMX19_04151 0.49 +1.1
462,946 + MPMX19_04151 0.49 +0.5
462,947 - MPMX19_04151 0.49 -0.2
462,947 - MPMX19_04151 0.49 -1.4
463,183 + MPMX19_04151 0.73 -0.2
463,183 + MPMX19_04151 0.73 -0.8
463,183 + MPMX19_04151 0.73 -0.7
463,183 + MPMX19_04151 0.73 +0.9
463,184 - MPMX19_04151 0.73 -0.2
463,184 - MPMX19_04151 0.73 +1.1
463,184 - MPMX19_04151 0.73 -2.2
463,417 + -2.1
463,417 + -0.0
463,417 + +0.7
463,417 + -0.6
463,418 - -1.0
463,418 - +0.4
463,418 - -0.2
463,418 - -0.2
463,418 - -1.4
463,418 - +0.3
463,418 - +1.4
463,418 - -0.9
463,713 + +0.3
463,713 + -0.7
463,713 + +0.2
463,713 + -0.2
463,713 + +0.2
463,713 + +0.7
463,714 - -0.6
463,714 - -0.1
463,714 - -0.3
463,714 - -0.9
463,714 - -0.3
463,714 - -1.7
463,799 - +0.3
463,799 - -0.4
463,805 + -0.2
463,805 + -0.7
463,805 + -0.5
463,805 + -0.5
463,805 + +0.8
463,805 + +1.1
463,806 - -0.5
463,858 + +0.6
463,858 + -0.3
463,859 - -0.7
463,859 - -0.3
463,859 - +1.0
463,859 - -0.7
464,045 + -1.9
464,046 - +0.5
464,141 + -0.8
464,141 + -1.0
464,141 + -0.4
464,142 - -0.9
464,142 - -1.0
464,142 - -1.3
464,142 - +0.4
464,142 - +0.7
464,142 - -0.7
464,142 - -0.2
464,142 - -0.3
464,219 + MPMX19_04152 0.12 -0.7
464,219 + MPMX19_04152 0.12 -0.7
464,219 + MPMX19_04152 0.12 -1.0
464,219 + MPMX19_04152 0.12 +1.3
464,220 - MPMX19_04152 0.12 -0.8
464,220 - MPMX19_04152 0.12 -1.7

Or see this region's nucleotide sequence