Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04097 and MPMX19_04098 are separated by 147 nucleotides MPMX19_04098 and MPMX19_04099 are separated by 259 nucleotides MPMX19_04099 and MPMX19_04100 are separated by 183 nucleotides
MPMX19_04097: MPMX19_04097 - IS5 family transposase ISAzs10, at 402,175 to 403,251
_04097
MPMX19_04098: MPMX19_04098 - Sensor histidine kinase RcsC, at 403,399 to 405,594
_04098
MPMX19_04099: MPMX19_04099 - Chemotaxis protein CheY, at 405,854 to 406,285
_04099
MPMX19_04100: MPMX19_04100 - hypothetical protein, at 406,469 to 407,233
_04100
Position (kb)
403
404
405
406 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 403.376 kb on + strand at 403.376 kb on + strand at 403.376 kb on + strand at 403.376 kb on + strand at 403.376 kb on + strand at 403.376 kb on + strand at 403.400 kb on + strand at 403.428 kb on + strand at 403.428 kb on + strand at 403.889 kb on + strand, within MPMX19_04098 at 403.889 kb on + strand, within MPMX19_04098 at 403.889 kb on + strand, within MPMX19_04098 at 403.889 kb on + strand, within MPMX19_04098 at 403.889 kb on + strand, within MPMX19_04098 at 403.889 kb on + strand, within MPMX19_04098 at 403.889 kb on + strand, within MPMX19_04098 at 403.889 kb on + strand, within MPMX19_04098 at 403.889 kb on + strand, within MPMX19_04098 at 403.890 kb on - strand, within MPMX19_04098 at 403.890 kb on - strand, within MPMX19_04098 at 403.890 kb on - strand, within MPMX19_04098 at 403.890 kb on - strand, within MPMX19_04098 at 404.057 kb on + strand, within MPMX19_04098 at 404.400 kb on - strand, within MPMX19_04098 at 404.400 kb on - strand, within MPMX19_04098 at 404.400 kb on - strand, within MPMX19_04098 at 404.400 kb on - strand, within MPMX19_04098 at 405.266 kb on + strand, within MPMX19_04098 at 405.266 kb on + strand, within MPMX19_04098 at 405.266 kb on + strand, within MPMX19_04098 at 405.266 kb on + strand, within MPMX19_04098 at 405.266 kb on + strand, within MPMX19_04098 at 405.266 kb on + strand, within MPMX19_04098 at 405.267 kb on - strand, within MPMX19_04098 at 405.267 kb on - strand, within MPMX19_04098 at 405.267 kb on - strand, within MPMX19_04098 at 405.267 kb on - strand, within MPMX19_04098 at 405.267 kb on - strand, within MPMX19_04098 at 405.267 kb on - strand, within MPMX19_04098 at 405.267 kb on - strand, within MPMX19_04098 at 405.395 kb on + strand at 405.428 kb on + strand at 405.428 kb on + strand at 405.429 kb on - strand at 405.429 kb on - strand at 405.429 kb on - strand at 405.429 kb on - strand at 405.429 kb on - strand at 405.641 kb on - strand at 405.723 kb on + strand at 405.726 kb on + strand at 405.726 kb on + strand at 405.726 kb on + strand at 405.726 kb on + strand at 405.726 kb on + strand at 405.726 kb on + strand at 405.726 kb on + strand at 405.726 kb on + strand at 405.726 kb on + strand at 405.726 kb on + strand at 405.726 kb on + strand at 405.726 kb on + strand at 405.726 kb on + strand at 405.726 kb on + strand at 405.727 kb on - strand at 405.727 kb on - strand at 405.727 kb on - strand at 405.727 kb on - strand at 405.727 kb on - strand at 405.727 kb on - strand at 405.754 kb on + strand at 405.754 kb on + strand at 405.785 kb on + strand at 405.785 kb on + strand at 405.785 kb on + strand at 405.785 kb on + strand at 405.785 kb on + strand at 405.786 kb on - strand at 405.786 kb on - strand at 405.897 kb on + strand at 405.897 kb on + strand at 405.897 kb on + strand at 405.897 kb on + strand at 405.898 kb on - strand, within MPMX19_04099 at 405.898 kb on - strand, within MPMX19_04099 at 405.898 kb on - strand, within MPMX19_04099 at 405.898 kb on - strand, within MPMX19_04099 at 405.953 kb on + strand, within MPMX19_04099 at 405.953 kb on + strand, within MPMX19_04099 at 405.954 kb on - strand, within MPMX19_04099 at 405.954 kb on - strand, within MPMX19_04099 at 406.202 kb on + strand, within MPMX19_04099 at 406.202 kb on + strand, within MPMX19_04099 at 406.203 kb on - strand, within MPMX19_04099 at 406.203 kb on - strand, within MPMX19_04099 at 406.217 kb on + strand, within MPMX19_04099 at 406.218 kb on - strand, within MPMX19_04099 at 406.369 kb on + strand at 406.369 kb on + strand at 406.369 kb on + strand at 406.369 kb on + strand at 406.369 kb on + strand at 406.369 kb on + strand at 406.370 kb on - strand at 406.370 kb on - strand at 406.370 kb on - strand at 406.370 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 403,376 + +0.3 403,376 + -0.8 403,376 + +0.0 403,376 + -1.1 403,376 + -1.1 403,376 + -1.5 403,400 + +0.1 403,428 + +1.4 403,428 + -1.0 403,889 + MPMX19_04098 0.22 +1.1 403,889 + MPMX19_04098 0.22 +0.5 403,889 + MPMX19_04098 0.22 -0.9 403,889 + MPMX19_04098 0.22 +0.8 403,889 + MPMX19_04098 0.22 +0.7 403,889 + MPMX19_04098 0.22 -2.1 403,889 + MPMX19_04098 0.22 -0.0 403,889 + MPMX19_04098 0.22 -0.2 403,889 + MPMX19_04098 0.22 -1.0 403,890 - MPMX19_04098 0.22 -1.3 403,890 - MPMX19_04098 0.22 +0.7 403,890 - MPMX19_04098 0.22 -0.8 403,890 - MPMX19_04098 0.22 +0.1 404,057 + MPMX19_04098 0.30 -1.1 404,400 - MPMX19_04098 0.46 -1.2 404,400 - MPMX19_04098 0.46 -1.1 404,400 - MPMX19_04098 0.46 -0.2 404,400 - MPMX19_04098 0.46 +0.7 405,266 + MPMX19_04098 0.85 +1.9 405,266 + MPMX19_04098 0.85 -1.0 405,266 + MPMX19_04098 0.85 +0.5 405,266 + MPMX19_04098 0.85 +1.7 405,266 + MPMX19_04098 0.85 -0.5 405,266 + MPMX19_04098 0.85 -1.4 405,267 - MPMX19_04098 0.85 +0.1 405,267 - MPMX19_04098 0.85 -0.2 405,267 - MPMX19_04098 0.85 -0.9 405,267 - MPMX19_04098 0.85 -0.2 405,267 - MPMX19_04098 0.85 +1.7 405,267 - MPMX19_04098 0.85 -0.3 405,267 - MPMX19_04098 0.85 +0.5 405,395 + +0.7 405,428 + -0.1 405,428 + +1.2 405,429 - +0.7 405,429 - +1.1 405,429 - -0.9 405,429 - +0.1 405,429 - -0.3 405,641 - -1.1 405,723 + -1.1 405,726 + -1.4 405,726 + -0.5 405,726 + -0.1 405,726 + -1.2 405,726 + +0.1 405,726 + -0.1 405,726 + +1.0 405,726 + +0.5 405,726 + -0.6 405,726 + +0.2 405,726 + +0.5 405,726 + -1.3 405,726 + -0.2 405,726 + -0.6 405,727 - -0.1 405,727 - -0.7 405,727 - +0.9 405,727 - -1.6 405,727 - -0.0 405,727 - -2.7 405,754 + -0.9 405,754 + -0.5 405,785 + +0.8 405,785 + -1.4 405,785 + -1.3 405,785 + +0.5 405,785 + -0.3 405,786 - -1.3 405,786 - -1.0 405,897 + +0.9 405,897 + +0.8 405,897 + -0.7 405,897 + +0.4 405,898 - MPMX19_04099 0.10 -0.1 405,898 - MPMX19_04099 0.10 -0.5 405,898 - MPMX19_04099 0.10 -0.9 405,898 - MPMX19_04099 0.10 -1.9 405,953 + MPMX19_04099 0.23 -1.6 405,953 + MPMX19_04099 0.23 +1.1 405,954 - MPMX19_04099 0.23 +0.2 405,954 - MPMX19_04099 0.23 -0.1 406,202 + MPMX19_04099 0.81 +0.0 406,202 + MPMX19_04099 0.81 -0.2 406,203 - MPMX19_04099 0.81 -0.1 406,203 - MPMX19_04099 0.81 -1.3 406,217 + MPMX19_04099 0.84 -0.1 406,218 - MPMX19_04099 0.84 +0.2 406,369 + +0.7 406,369 + -1.9 406,369 + -1.9 406,369 + -1.2 406,369 + -0.6 406,369 + +0.3 406,370 - -1.5 406,370 - +0.3 406,370 - -1.7 406,370 - -0.6
Or see this region's nucleotide sequence