Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04098

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04097 and MPMX19_04098 are separated by 147 nucleotidesMPMX19_04098 and MPMX19_04099 are separated by 259 nucleotidesMPMX19_04099 and MPMX19_04100 are separated by 183 nucleotides MPMX19_04097: MPMX19_04097 - IS5 family transposase ISAzs10, at 402,175 to 403,251 _04097 MPMX19_04098: MPMX19_04098 - Sensor histidine kinase RcsC, at 403,399 to 405,594 _04098 MPMX19_04099: MPMX19_04099 - Chemotaxis protein CheY, at 405,854 to 406,285 _04099 MPMX19_04100: MPMX19_04100 - hypothetical protein, at 406,469 to 407,233 _04100 Position (kb) 403 404 405 406Strain fitness (log2 ratio) -2 -1 0 1 2at 403.376 kb on + strandat 403.376 kb on + strandat 403.376 kb on + strandat 403.376 kb on + strandat 403.376 kb on + strandat 403.376 kb on + strandat 403.400 kb on + strandat 403.428 kb on + strandat 403.428 kb on + strandat 403.889 kb on + strand, within MPMX19_04098at 403.889 kb on + strand, within MPMX19_04098at 403.889 kb on + strand, within MPMX19_04098at 403.889 kb on + strand, within MPMX19_04098at 403.889 kb on + strand, within MPMX19_04098at 403.889 kb on + strand, within MPMX19_04098at 403.889 kb on + strand, within MPMX19_04098at 403.889 kb on + strand, within MPMX19_04098at 403.889 kb on + strand, within MPMX19_04098at 403.890 kb on - strand, within MPMX19_04098at 403.890 kb on - strand, within MPMX19_04098at 403.890 kb on - strand, within MPMX19_04098at 403.890 kb on - strand, within MPMX19_04098at 404.057 kb on + strand, within MPMX19_04098at 404.400 kb on - strand, within MPMX19_04098at 404.400 kb on - strand, within MPMX19_04098at 404.400 kb on - strand, within MPMX19_04098at 404.400 kb on - strand, within MPMX19_04098at 405.266 kb on + strand, within MPMX19_04098at 405.266 kb on + strand, within MPMX19_04098at 405.266 kb on + strand, within MPMX19_04098at 405.266 kb on + strand, within MPMX19_04098at 405.266 kb on + strand, within MPMX19_04098at 405.266 kb on + strand, within MPMX19_04098at 405.267 kb on - strand, within MPMX19_04098at 405.267 kb on - strand, within MPMX19_04098at 405.267 kb on - strand, within MPMX19_04098at 405.267 kb on - strand, within MPMX19_04098at 405.267 kb on - strand, within MPMX19_04098at 405.267 kb on - strand, within MPMX19_04098at 405.267 kb on - strand, within MPMX19_04098at 405.395 kb on + strandat 405.428 kb on + strandat 405.428 kb on + strandat 405.429 kb on - strandat 405.429 kb on - strandat 405.429 kb on - strandat 405.429 kb on - strandat 405.429 kb on - strandat 405.641 kb on - strandat 405.723 kb on + strandat 405.726 kb on + strandat 405.726 kb on + strandat 405.726 kb on + strandat 405.726 kb on + strandat 405.726 kb on + strandat 405.726 kb on + strandat 405.726 kb on + strandat 405.726 kb on + strandat 405.726 kb on + strandat 405.726 kb on + strandat 405.726 kb on + strandat 405.726 kb on + strandat 405.726 kb on + strandat 405.726 kb on + strandat 405.727 kb on - strandat 405.727 kb on - strandat 405.727 kb on - strandat 405.727 kb on - strandat 405.727 kb on - strandat 405.727 kb on - strandat 405.754 kb on + strandat 405.754 kb on + strandat 405.785 kb on + strandat 405.785 kb on + strandat 405.785 kb on + strandat 405.785 kb on + strandat 405.785 kb on + strandat 405.786 kb on - strandat 405.786 kb on - strandat 405.897 kb on + strandat 405.897 kb on + strandat 405.897 kb on + strandat 405.897 kb on + strandat 405.898 kb on - strand, within MPMX19_04099at 405.898 kb on - strand, within MPMX19_04099at 405.898 kb on - strand, within MPMX19_04099at 405.898 kb on - strand, within MPMX19_04099at 405.953 kb on + strand, within MPMX19_04099at 405.953 kb on + strand, within MPMX19_04099at 405.954 kb on - strand, within MPMX19_04099at 405.954 kb on - strand, within MPMX19_04099at 406.202 kb on + strand, within MPMX19_04099at 406.202 kb on + strand, within MPMX19_04099at 406.203 kb on - strand, within MPMX19_04099at 406.203 kb on - strand, within MPMX19_04099at 406.217 kb on + strand, within MPMX19_04099at 406.218 kb on - strand, within MPMX19_04099at 406.369 kb on + strandat 406.369 kb on + strandat 406.369 kb on + strandat 406.369 kb on + strandat 406.369 kb on + strandat 406.369 kb on + strandat 406.370 kb on - strandat 406.370 kb on - strandat 406.370 kb on - strandat 406.370 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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403,376 + +0.3
403,376 + -0.8
403,376 + +0.0
403,376 + -1.1
403,376 + -1.1
403,376 + -1.5
403,400 + +0.1
403,428 + +1.4
403,428 + -1.0
403,889 + MPMX19_04098 0.22 +1.1
403,889 + MPMX19_04098 0.22 +0.5
403,889 + MPMX19_04098 0.22 -0.9
403,889 + MPMX19_04098 0.22 +0.8
403,889 + MPMX19_04098 0.22 +0.7
403,889 + MPMX19_04098 0.22 -2.1
403,889 + MPMX19_04098 0.22 -0.0
403,889 + MPMX19_04098 0.22 -0.2
403,889 + MPMX19_04098 0.22 -1.0
403,890 - MPMX19_04098 0.22 -1.3
403,890 - MPMX19_04098 0.22 +0.7
403,890 - MPMX19_04098 0.22 -0.8
403,890 - MPMX19_04098 0.22 +0.1
404,057 + MPMX19_04098 0.30 -1.1
404,400 - MPMX19_04098 0.46 -1.2
404,400 - MPMX19_04098 0.46 -1.1
404,400 - MPMX19_04098 0.46 -0.2
404,400 - MPMX19_04098 0.46 +0.7
405,266 + MPMX19_04098 0.85 +1.9
405,266 + MPMX19_04098 0.85 -1.0
405,266 + MPMX19_04098 0.85 +0.5
405,266 + MPMX19_04098 0.85 +1.7
405,266 + MPMX19_04098 0.85 -0.5
405,266 + MPMX19_04098 0.85 -1.4
405,267 - MPMX19_04098 0.85 +0.1
405,267 - MPMX19_04098 0.85 -0.2
405,267 - MPMX19_04098 0.85 -0.9
405,267 - MPMX19_04098 0.85 -0.2
405,267 - MPMX19_04098 0.85 +1.7
405,267 - MPMX19_04098 0.85 -0.3
405,267 - MPMX19_04098 0.85 +0.5
405,395 + +0.7
405,428 + -0.1
405,428 + +1.2
405,429 - +0.7
405,429 - +1.1
405,429 - -0.9
405,429 - +0.1
405,429 - -0.3
405,641 - -1.1
405,723 + -1.1
405,726 + -1.4
405,726 + -0.5
405,726 + -0.1
405,726 + -1.2
405,726 + +0.1
405,726 + -0.1
405,726 + +1.0
405,726 + +0.5
405,726 + -0.6
405,726 + +0.2
405,726 + +0.5
405,726 + -1.3
405,726 + -0.2
405,726 + -0.6
405,727 - -0.1
405,727 - -0.7
405,727 - +0.9
405,727 - -1.6
405,727 - -0.0
405,727 - -2.7
405,754 + -0.9
405,754 + -0.5
405,785 + +0.8
405,785 + -1.4
405,785 + -1.3
405,785 + +0.5
405,785 + -0.3
405,786 - -1.3
405,786 - -1.0
405,897 + +0.9
405,897 + +0.8
405,897 + -0.7
405,897 + +0.4
405,898 - MPMX19_04099 0.10 -0.1
405,898 - MPMX19_04099 0.10 -0.5
405,898 - MPMX19_04099 0.10 -0.9
405,898 - MPMX19_04099 0.10 -1.9
405,953 + MPMX19_04099 0.23 -1.6
405,953 + MPMX19_04099 0.23 +1.1
405,954 - MPMX19_04099 0.23 +0.2
405,954 - MPMX19_04099 0.23 -0.1
406,202 + MPMX19_04099 0.81 +0.0
406,202 + MPMX19_04099 0.81 -0.2
406,203 - MPMX19_04099 0.81 -0.1
406,203 - MPMX19_04099 0.81 -1.3
406,217 + MPMX19_04099 0.84 -0.1
406,218 - MPMX19_04099 0.84 +0.2
406,369 + +0.7
406,369 + -1.9
406,369 + -1.9
406,369 + -1.2
406,369 + -0.6
406,369 + +0.3
406,370 - -1.5
406,370 - +0.3
406,370 - -1.7
406,370 - -0.6

Or see this region's nucleotide sequence