Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04077

Experiment: NL-CCM, start OD=0.1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_04076 and MPMX19_04077 are separated by 67 nucleotidesMPMX19_04077 and MPMX19_04078 are separated by 22 nucleotidesMPMX19_04078 and MPMX19_04079 are separated by 4 nucleotides MPMX19_04076: MPMX19_04076 - hypothetical protein, at 382,622 to 383,344 _04076 MPMX19_04077: MPMX19_04077 - Adaptive-response sensory-kinase SasA, at 383,412 to 384,773 _04077 MPMX19_04078: MPMX19_04078 - Virulence transcriptional regulatory protein PhoP, at 384,796 to 385,455 _04078 MPMX19_04079: MPMX19_04079 - hypothetical protein, at 385,460 to 385,783 _04079 Position (kb) 383 384 385Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 382.490 kb on - strandat 382.490 kb on - strandat 382.566 kb on + strandat 382.566 kb on + strandat 382.566 kb on + strandat 382.566 kb on + strandat 382.566 kb on + strandat 382.567 kb on - strandat 382.567 kb on - strandat 382.567 kb on - strandat 382.567 kb on - strandat 382.567 kb on - strandat 382.567 kb on - strandat 382.567 kb on - strandat 382.567 kb on - strandat 382.567 kb on - strandat 382.567 kb on - strandat 382.567 kb on - strandat 382.567 kb on - strandat 383.082 kb on + strand, within MPMX19_04076at 383.082 kb on + strand, within MPMX19_04076at 383.082 kb on + strand, within MPMX19_04076at 383.082 kb on + strand, within MPMX19_04076at 383.082 kb on + strand, within MPMX19_04076at 383.082 kb on + strand, within MPMX19_04076at 383.082 kb on + strand, within MPMX19_04076at 383.083 kb on - strand, within MPMX19_04076at 383.083 kb on - strand, within MPMX19_04076at 383.097 kb on + strand, within MPMX19_04076at 383.097 kb on + strand, within MPMX19_04076at 383.098 kb on - strand, within MPMX19_04076at 383.098 kb on - strand, within MPMX19_04076at 383.190 kb on + strand, within MPMX19_04076at 383.190 kb on + strand, within MPMX19_04076at 383.190 kb on + strand, within MPMX19_04076at 383.190 kb on + strand, within MPMX19_04076at 383.190 kb on + strand, within MPMX19_04076at 383.190 kb on + strand, within MPMX19_04076at 383.190 kb on + strand, within MPMX19_04076at 383.190 kb on + strand, within MPMX19_04076at 383.190 kb on + strand, within MPMX19_04076at 383.190 kb on + strand, within MPMX19_04076at 383.190 kb on + strand, within MPMX19_04076at 383.190 kb on + strand, within MPMX19_04076at 383.190 kb on + strand, within MPMX19_04076at 383.190 kb on + strand, within MPMX19_04076at 383.190 kb on + strand, within MPMX19_04076at 383.190 kb on + strand, within MPMX19_04076at 383.190 kb on + strand, within MPMX19_04076at 383.190 kb on + strand, within MPMX19_04076at 383.190 kb on + strand, within MPMX19_04076at 383.190 kb on + strand, within MPMX19_04076at 383.190 kb on + strand, within MPMX19_04076at 383.190 kb on + strand, within MPMX19_04076at 383.190 kb on - strand, within MPMX19_04076at 383.191 kb on - strand, within MPMX19_04076at 383.191 kb on - strand, within MPMX19_04076at 383.191 kb on - strand, within MPMX19_04076at 383.191 kb on - strand, within MPMX19_04076at 383.191 kb on - strand, within MPMX19_04076at 383.191 kb on - strand, within MPMX19_04076at 383.191 kb on - strand, within MPMX19_04076at 383.191 kb on - strand, within MPMX19_04076at 383.191 kb on - strand, within MPMX19_04076at 383.191 kb on - strand, within MPMX19_04076at 383.191 kb on - strand, within MPMX19_04076at 383.191 kb on - strand, within MPMX19_04076at 383.191 kb on - strand, within MPMX19_04076at 383.191 kb on - strand, within MPMX19_04076at 383.191 kb on - strand, within MPMX19_04076at 383.191 kb on - strand, within MPMX19_04076at 383.191 kb on - strand, within MPMX19_04076at 383.191 kb on - strand, within MPMX19_04076at 383.191 kb on - strand, within MPMX19_04076at 383.191 kb on - strand, within MPMX19_04076at 383.191 kb on - strand, within MPMX19_04076at 383.191 kb on - strand, within MPMX19_04076at 383.191 kb on - strand, within MPMX19_04076at 383.191 kb on - strand, within MPMX19_04076at 383.191 kb on - strand, within MPMX19_04076at 383.191 kb on - strand, within MPMX19_04076at 383.191 kb on - strand, within MPMX19_04076at 383.191 kb on - strand, within MPMX19_04076at 383.191 kb on - strand, within MPMX19_04076at 383.191 kb on - strand, within MPMX19_04076at 383.191 kb on - strand, within MPMX19_04076at 383.191 kb on - strand, within MPMX19_04076at 383.388 kb on + strandat 383.389 kb on - strandat 383.389 kb on - strandat 383.389 kb on - strandat 383.491 kb on + strandat 383.491 kb on + strandat 383.491 kb on + strandat 383.491 kb on + strandat 383.491 kb on + strandat 383.492 kb on - strandat 383.492 kb on - strandat 383.492 kb on - strandat 383.897 kb on + strand, within MPMX19_04077at 383.897 kb on + strand, within MPMX19_04077at 383.897 kb on + strand, within MPMX19_04077at 383.897 kb on + strand, within MPMX19_04077at 383.897 kb on + strand, within MPMX19_04077at 383.897 kb on + strand, within MPMX19_04077at 383.897 kb on + strand, within MPMX19_04077at 383.897 kb on + strand, within MPMX19_04077at 383.897 kb on + strand, within MPMX19_04077at 383.897 kb on + strand, within MPMX19_04077at 383.897 kb on + strand, within MPMX19_04077at 383.897 kb on + strand, within MPMX19_04077at 383.897 kb on + strand, within MPMX19_04077at 383.897 kb on + strand, within MPMX19_04077at 383.898 kb on - strand, within MPMX19_04077at 383.898 kb on - strand, within MPMX19_04077at 383.898 kb on - strand, within MPMX19_04077at 383.898 kb on - strand, within MPMX19_04077at 383.898 kb on - strand, within MPMX19_04077at 384.523 kb on + strand, within MPMX19_04077at 384.523 kb on + strand, within MPMX19_04077at 384.523 kb on + strand, within MPMX19_04077at 384.524 kb on - strand, within MPMX19_04077at 384.524 kb on - strand, within MPMX19_04077at 384.524 kb on - strand, within MPMX19_04077at 384.524 kb on - strand, within MPMX19_04077at 384.815 kb on + strandat 384.920 kb on + strand, within MPMX19_04078at 384.920 kb on + strand, within MPMX19_04078at 384.920 kb on + strand, within MPMX19_04078at 384.920 kb on + strand, within MPMX19_04078at 384.920 kb on + strand, within MPMX19_04078at 384.920 kb on + strand, within MPMX19_04078at 384.920 kb on + strand, within MPMX19_04078at 384.920 kb on + strand, within MPMX19_04078at 384.920 kb on + strand, within MPMX19_04078at 384.921 kb on - strand, within MPMX19_04078at 384.921 kb on - strand, within MPMX19_04078at 384.921 kb on - strand, within MPMX19_04078at 384.921 kb on - strand, within MPMX19_04078at 384.921 kb on - strand, within MPMX19_04078at 384.921 kb on - strand, within MPMX19_04078at 384.921 kb on - strand, within MPMX19_04078at 384.977 kb on + strand, within MPMX19_04078at 384.977 kb on + strand, within MPMX19_04078at 384.977 kb on + strand, within MPMX19_04078at 384.977 kb on + strand, within MPMX19_04078at 384.977 kb on + strand, within MPMX19_04078at 384.978 kb on - strand, within MPMX19_04078at 384.978 kb on - strand, within MPMX19_04078at 384.978 kb on - strand, within MPMX19_04078at 384.978 kb on - strand, within MPMX19_04078at 384.978 kb on - strand, within MPMX19_04078at 384.978 kb on - strand, within MPMX19_04078at 384.978 kb on - strand, within MPMX19_04078at 384.978 kb on - strand, within MPMX19_04078at 384.978 kb on - strand, within MPMX19_04078at 385.163 kb on + strand, within MPMX19_04078at 385.164 kb on - strand, within MPMX19_04078at 385.164 kb on - strand, within MPMX19_04078at 385.322 kb on + strand, within MPMX19_04078at 385.322 kb on + strand, within MPMX19_04078at 385.322 kb on + strand, within MPMX19_04078at 385.323 kb on - strand, within MPMX19_04078at 385.323 kb on - strand, within MPMX19_04078at 385.323 kb on - strand, within MPMX19_04078at 385.323 kb on - strand, within MPMX19_04078at 385.323 kb on - strand, within MPMX19_04078at 385.323 kb on - strand, within MPMX19_04078at 385.323 kb on - strand, within MPMX19_04078at 385.382 kb on + strand, within MPMX19_04078at 385.382 kb on + strand, within MPMX19_04078at 385.383 kb on - strand, within MPMX19_04078at 385.383 kb on - strand, within MPMX19_04078at 385.383 kb on - strand, within MPMX19_04078at 385.383 kb on - strand, within MPMX19_04078at 385.461 kb on + strandat 385.461 kb on + strandat 385.461 kb on + strandat 385.461 kb on + strandat 385.461 kb on + strandat 385.461 kb on + strandat 385.461 kb on + strandat 385.461 kb on + strandat 385.461 kb on + strandat 385.462 kb on - strandat 385.462 kb on - strandat 385.462 kb on - strandat 385.462 kb on - strandat 385.462 kb on - strandat 385.462 kb on - strandat 385.462 kb on - strandat 385.462 kb on - strandat 385.462 kb on - strandat 385.527 kb on + strand, within MPMX19_04079at 385.527 kb on + strand, within MPMX19_04079at 385.527 kb on + strand, within MPMX19_04079at 385.527 kb on + strand, within MPMX19_04079

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
remove
382,490 - -0.9
382,490 - -0.8
382,566 + -0.1
382,566 + -1.1
382,566 + -0.9
382,566 + -0.7
382,566 + -0.5
382,567 - -1.2
382,567 - -0.6
382,567 - -0.7
382,567 - +1.4
382,567 - +0.2
382,567 - -0.4
382,567 - +1.7
382,567 - -1.9
382,567 - -0.5
382,567 - -0.8
382,567 - -1.1
382,567 - +1.4
383,082 + MPMX19_04076 0.64 -0.6
383,082 + MPMX19_04076 0.64 -1.6
383,082 + MPMX19_04076 0.64 +0.6
383,082 + MPMX19_04076 0.64 -1.0
383,082 + MPMX19_04076 0.64 +0.2
383,082 + MPMX19_04076 0.64 -0.7
383,082 + MPMX19_04076 0.64 +1.2
383,083 - MPMX19_04076 0.64 +0.5
383,083 - MPMX19_04076 0.64 -0.3
383,097 + MPMX19_04076 0.66 -1.6
383,097 + MPMX19_04076 0.66 -1.0
383,098 - MPMX19_04076 0.66 +0.3
383,098 - MPMX19_04076 0.66 -0.9
383,190 + MPMX19_04076 0.79 -0.5
383,190 + MPMX19_04076 0.79 -0.3
383,190 + MPMX19_04076 0.79 -0.1
383,190 + MPMX19_04076 0.79 +0.1
383,190 + MPMX19_04076 0.79 -0.3
383,190 + MPMX19_04076 0.79 -0.4
383,190 + MPMX19_04076 0.79 -0.5
383,190 + MPMX19_04076 0.79 -0.3
383,190 + MPMX19_04076 0.79 +0.8
383,190 + MPMX19_04076 0.79 -0.1
383,190 + MPMX19_04076 0.79 -0.2
383,190 + MPMX19_04076 0.79 -0.2
383,190 + MPMX19_04076 0.79 -0.5
383,190 + MPMX19_04076 0.79 -1.8
383,190 + MPMX19_04076 0.79 +0.5
383,190 + MPMX19_04076 0.79 +0.0
383,190 + MPMX19_04076 0.79 +0.7
383,190 + MPMX19_04076 0.79 +0.4
383,190 + MPMX19_04076 0.79 +0.0
383,190 + MPMX19_04076 0.79 -0.8
383,190 + MPMX19_04076 0.79 +1.4
383,190 + MPMX19_04076 0.79 -0.8
383,190 - MPMX19_04076 0.79 +1.1
383,191 - MPMX19_04076 0.79 -0.6
383,191 - MPMX19_04076 0.79 +0.7
383,191 - MPMX19_04076 0.79 -0.2
383,191 - MPMX19_04076 0.79 +0.4
383,191 - MPMX19_04076 0.79 +0.0
383,191 - MPMX19_04076 0.79 -1.3
383,191 - MPMX19_04076 0.79 +1.3
383,191 - MPMX19_04076 0.79 -1.0
383,191 - MPMX19_04076 0.79 -2.4
383,191 - MPMX19_04076 0.79 +0.3
383,191 - MPMX19_04076 0.79 -1.2
383,191 - MPMX19_04076 0.79 -1.1
383,191 - MPMX19_04076 0.79 +0.1
383,191 - MPMX19_04076 0.79 +1.3
383,191 - MPMX19_04076 0.79 -0.6
383,191 - MPMX19_04076 0.79 -0.4
383,191 - MPMX19_04076 0.79 +1.7
383,191 - MPMX19_04076 0.79 -0.3
383,191 - MPMX19_04076 0.79 -0.2
383,191 - MPMX19_04076 0.79 -0.4
383,191 - MPMX19_04076 0.79 -1.5
383,191 - MPMX19_04076 0.79 +1.0
383,191 - MPMX19_04076 0.79 -1.5
383,191 - MPMX19_04076 0.79 -0.5
383,191 - MPMX19_04076 0.79 -0.4
383,191 - MPMX19_04076 0.79 -0.2
383,191 - MPMX19_04076 0.79 -0.4
383,191 - MPMX19_04076 0.79 +0.7
383,191 - MPMX19_04076 0.79 -1.8
383,191 - MPMX19_04076 0.79 +1.9
383,191 - MPMX19_04076 0.79 -0.6
383,191 - MPMX19_04076 0.79 -0.9
383,388 + -0.8
383,389 - -1.3
383,389 - +0.3
383,389 - -1.8
383,491 + -0.9
383,491 + +0.3
383,491 + +2.0
383,491 + -0.4
383,491 + -2.4
383,492 - -1.6
383,492 - -0.2
383,492 - -1.7
383,897 + MPMX19_04077 0.36 +0.7
383,897 + MPMX19_04077 0.36 +1.3
383,897 + MPMX19_04077 0.36 -0.3
383,897 + MPMX19_04077 0.36 +0.1
383,897 + MPMX19_04077 0.36 +0.7
383,897 + MPMX19_04077 0.36 -0.3
383,897 + MPMX19_04077 0.36 -2.0
383,897 + MPMX19_04077 0.36 +0.7
383,897 + MPMX19_04077 0.36 +0.3
383,897 + MPMX19_04077 0.36 -0.9
383,897 + MPMX19_04077 0.36 +0.6
383,897 + MPMX19_04077 0.36 -0.7
383,897 + MPMX19_04077 0.36 +0.1
383,897 + MPMX19_04077 0.36 -0.8
383,898 - MPMX19_04077 0.36 +0.1
383,898 - MPMX19_04077 0.36 +0.4
383,898 - MPMX19_04077 0.36 -1.1
383,898 - MPMX19_04077 0.36 -0.5
383,898 - MPMX19_04077 0.36 +0.4
384,523 + MPMX19_04077 0.82 -1.5
384,523 + MPMX19_04077 0.82 -0.4
384,523 + MPMX19_04077 0.82 +0.0
384,524 - MPMX19_04077 0.82 +1.1
384,524 - MPMX19_04077 0.82 -0.0
384,524 - MPMX19_04077 0.82 +0.9
384,524 - MPMX19_04077 0.82 -1.1
384,815 + -0.2
384,920 + MPMX19_04078 0.19 -0.3
384,920 + MPMX19_04078 0.19 -1.6
384,920 + MPMX19_04078 0.19 -1.3
384,920 + MPMX19_04078 0.19 -0.3
384,920 + MPMX19_04078 0.19 +1.4
384,920 + MPMX19_04078 0.19 -0.5
384,920 + MPMX19_04078 0.19 -0.2
384,920 + MPMX19_04078 0.19 +0.4
384,920 + MPMX19_04078 0.19 -0.2
384,921 - MPMX19_04078 0.19 +0.4
384,921 - MPMX19_04078 0.19 +0.9
384,921 - MPMX19_04078 0.19 +1.0
384,921 - MPMX19_04078 0.19 +0.5
384,921 - MPMX19_04078 0.19 +0.8
384,921 - MPMX19_04078 0.19 -0.2
384,921 - MPMX19_04078 0.19 -1.2
384,977 + MPMX19_04078 0.27 -0.1
384,977 + MPMX19_04078 0.27 +0.1
384,977 + MPMX19_04078 0.27 -1.5
384,977 + MPMX19_04078 0.27 +1.1
384,977 + MPMX19_04078 0.27 -2.8
384,978 - MPMX19_04078 0.28 -0.9
384,978 - MPMX19_04078 0.28 -1.0
384,978 - MPMX19_04078 0.28 +0.1
384,978 - MPMX19_04078 0.28 -1.0
384,978 - MPMX19_04078 0.28 -0.3
384,978 - MPMX19_04078 0.28 +0.7
384,978 - MPMX19_04078 0.28 -0.8
384,978 - MPMX19_04078 0.28 -0.1
384,978 - MPMX19_04078 0.28 -0.4
385,163 + MPMX19_04078 0.56 -1.1
385,164 - MPMX19_04078 0.56 -0.6
385,164 - MPMX19_04078 0.56 -0.3
385,322 + MPMX19_04078 0.80 +1.5
385,322 + MPMX19_04078 0.80 +0.3
385,322 + MPMX19_04078 0.80 -0.6
385,323 - MPMX19_04078 0.80 -1.6
385,323 - MPMX19_04078 0.80 +0.5
385,323 - MPMX19_04078 0.80 -0.6
385,323 - MPMX19_04078 0.80 +1.1
385,323 - MPMX19_04078 0.80 +0.4
385,323 - MPMX19_04078 0.80 +0.3
385,323 - MPMX19_04078 0.80 -1.6
385,382 + MPMX19_04078 0.89 -0.3
385,382 + MPMX19_04078 0.89 -0.5
385,383 - MPMX19_04078 0.89 -1.8
385,383 - MPMX19_04078 0.89 -0.0
385,383 - MPMX19_04078 0.89 -0.2
385,383 - MPMX19_04078 0.89 -1.1
385,461 + +0.7
385,461 + +1.0
385,461 + -1.3
385,461 + -1.8
385,461 + -1.2
385,461 + -0.5
385,461 + -2.4
385,461 + +0.1
385,461 + -0.4
385,462 - -1.8
385,462 - +1.1
385,462 - +0.3
385,462 - +1.0
385,462 - -0.1
385,462 - -1.4
385,462 - +0.0
385,462 - -0.3
385,462 - +0.6
385,527 + MPMX19_04079 0.21 -0.6
385,527 + MPMX19_04079 0.21 -1.8
385,527 + MPMX19_04079 0.21 -0.0
385,527 + MPMX19_04079 0.21 -2.8

Or see this region's nucleotide sequence