Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04050

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04049 and MPMX19_04050 are separated by 209 nucleotidesMPMX19_04050 and MPMX19_04051 are separated by 180 nucleotides MPMX19_04049: MPMX19_04049 - Aldose sugar dehydrogenase YliI, at 351,188 to 352,369 _04049 MPMX19_04050: MPMX19_04050 - hypothetical protein, at 352,579 to 353,613 _04050 MPMX19_04051: MPMX19_04051 - Alcohol dehydrogenase, at 353,794 to 354,867 _04051 Position (kb) 352 353 354Strain fitness (log2 ratio) -2 -1 0 1 2at 351.660 kb on + strand, within MPMX19_04049at 351.661 kb on - strand, within MPMX19_04049at 351.661 kb on - strand, within MPMX19_04049at 351.661 kb on - strand, within MPMX19_04049at 351.789 kb on + strand, within MPMX19_04049at 351.789 kb on + strand, within MPMX19_04049at 351.976 kb on - strand, within MPMX19_04049at 351.976 kb on - strand, within MPMX19_04049at 351.984 kb on + strand, within MPMX19_04049at 351.984 kb on + strand, within MPMX19_04049at 351.984 kb on + strand, within MPMX19_04049at 351.984 kb on + strand, within MPMX19_04049at 351.984 kb on + strand, within MPMX19_04049at 351.984 kb on + strand, within MPMX19_04049at 351.984 kb on + strand, within MPMX19_04049at 351.985 kb on - strand, within MPMX19_04049at 351.985 kb on - strand, within MPMX19_04049at 351.985 kb on - strand, within MPMX19_04049at 351.985 kb on - strand, within MPMX19_04049at 351.985 kb on - strand, within MPMX19_04049at 351.985 kb on - strand, within MPMX19_04049at 351.985 kb on - strand, within MPMX19_04049at 351.985 kb on - strand, within MPMX19_04049at 351.985 kb on - strand, within MPMX19_04049at 352.163 kb on + strand, within MPMX19_04049at 352.163 kb on + strand, within MPMX19_04049at 352.163 kb on + strand, within MPMX19_04049at 352.164 kb on - strand, within MPMX19_04049at 352.164 kb on - strand, within MPMX19_04049at 352.164 kb on - strand, within MPMX19_04049at 352.164 kb on - strand, within MPMX19_04049at 352.164 kb on - strand, within MPMX19_04049at 352.243 kb on + strand, within MPMX19_04049at 352.243 kb on + strand, within MPMX19_04049at 352.244 kb on - strand, within MPMX19_04049at 352.244 kb on - strand, within MPMX19_04049at 352.244 kb on - strand, within MPMX19_04049at 352.508 kb on + strandat 352.509 kb on - strandat 352.509 kb on - strandat 352.529 kb on + strandat 352.529 kb on + strandat 352.529 kb on + strandat 352.529 kb on + strandat 352.529 kb on + strandat 352.529 kb on + strandat 352.529 kb on + strandat 352.530 kb on - strandat 352.530 kb on - strandat 352.530 kb on - strandat 352.530 kb on - strandat 352.530 kb on - strandat 352.530 kb on - strandat 352.530 kb on - strandat 352.541 kb on + strandat 352.541 kb on + strandat 352.541 kb on + strandat 352.541 kb on + strandat 352.541 kb on + strandat 352.541 kb on + strandat 352.542 kb on - strandat 352.578 kb on + strandat 352.636 kb on + strandat 352.636 kb on + strandat 352.636 kb on + strandat 352.636 kb on + strandat 352.636 kb on + strandat 352.636 kb on + strandat 352.636 kb on + strandat 352.636 kb on + strandat 352.636 kb on + strandat 352.637 kb on - strandat 352.637 kb on - strandat 352.637 kb on - strandat 352.637 kb on - strandat 352.637 kb on - strandat 352.637 kb on - strandat 352.637 kb on - strandat 352.637 kb on - strandat 352.681 kb on + strandat 352.681 kb on + strandat 352.682 kb on - strandat 352.709 kb on - strand, within MPMX19_04050at 352.709 kb on - strand, within MPMX19_04050at 352.709 kb on - strand, within MPMX19_04050at 352.709 kb on - strand, within MPMX19_04050at 352.775 kb on - strand, within MPMX19_04050at 352.775 kb on - strand, within MPMX19_04050at 352.775 kb on - strand, within MPMX19_04050at 352.879 kb on + strand, within MPMX19_04050at 352.879 kb on + strand, within MPMX19_04050at 352.879 kb on + strand, within MPMX19_04050at 352.879 kb on + strand, within MPMX19_04050at 352.879 kb on + strand, within MPMX19_04050at 352.879 kb on + strand, within MPMX19_04050at 352.879 kb on + strand, within MPMX19_04050at 352.879 kb on + strand, within MPMX19_04050at 352.879 kb on + strand, within MPMX19_04050at 352.879 kb on + strand, within MPMX19_04050at 352.879 kb on + strand, within MPMX19_04050at 352.879 kb on + strand, within MPMX19_04050at 352.879 kb on + strand, within MPMX19_04050at 352.879 kb on + strand, within MPMX19_04050at 352.879 kb on + strand, within MPMX19_04050at 352.879 kb on + strand, within MPMX19_04050at 352.879 kb on + strand, within MPMX19_04050at 352.879 kb on + strand, within MPMX19_04050at 352.879 kb on + strand, within MPMX19_04050at 352.879 kb on + strand, within MPMX19_04050at 352.879 kb on + strand, within MPMX19_04050at 352.879 kb on + strand, within MPMX19_04050at 352.879 kb on + strand, within MPMX19_04050at 352.879 kb on + strand, within MPMX19_04050at 352.879 kb on + strand, within MPMX19_04050at 352.879 kb on + strand, within MPMX19_04050at 352.879 kb on + strand, within MPMX19_04050at 352.879 kb on + strand, within MPMX19_04050at 352.879 kb on + strand, within MPMX19_04050at 352.879 kb on + strand, within MPMX19_04050at 352.880 kb on - strand, within MPMX19_04050at 352.880 kb on - strand, within MPMX19_04050at 352.880 kb on - strand, within MPMX19_04050at 352.880 kb on - strand, within MPMX19_04050at 352.880 kb on - strand, within MPMX19_04050at 352.880 kb on - strand, within MPMX19_04050at 352.880 kb on - strand, within MPMX19_04050at 352.880 kb on - strand, within MPMX19_04050at 352.880 kb on - strand, within MPMX19_04050at 352.880 kb on - strand, within MPMX19_04050at 352.880 kb on - strand, within MPMX19_04050at 352.880 kb on - strand, within MPMX19_04050at 352.880 kb on - strand, within MPMX19_04050at 352.880 kb on - strand, within MPMX19_04050at 352.880 kb on - strand, within MPMX19_04050at 352.880 kb on - strand, within MPMX19_04050at 352.880 kb on - strand, within MPMX19_04050at 352.880 kb on - strand, within MPMX19_04050at 352.880 kb on - strand, within MPMX19_04050at 352.880 kb on - strand, within MPMX19_04050at 352.880 kb on - strand, within MPMX19_04050at 352.880 kb on - strand, within MPMX19_04050at 352.880 kb on - strand, within MPMX19_04050at 352.880 kb on - strand, within MPMX19_04050at 352.880 kb on - strand, within MPMX19_04050at 352.880 kb on - strand, within MPMX19_04050at 352.880 kb on - strand, within MPMX19_04050at 352.880 kb on - strand, within MPMX19_04050at 352.880 kb on - strand, within MPMX19_04050at 352.880 kb on - strand, within MPMX19_04050at 352.880 kb on - strand, within MPMX19_04050at 352.880 kb on - strand, within MPMX19_04050at 352.881 kb on + strand, within MPMX19_04050at 352.881 kb on + strand, within MPMX19_04050at 352.881 kb on + strand, within MPMX19_04050at 352.881 kb on + strand, within MPMX19_04050at 352.881 kb on + strand, within MPMX19_04050at 352.881 kb on + strand, within MPMX19_04050at 352.882 kb on - strand, within MPMX19_04050at 352.882 kb on - strand, within MPMX19_04050at 352.882 kb on - strand, within MPMX19_04050at 352.951 kb on + strand, within MPMX19_04050at 352.952 kb on - strand, within MPMX19_04050at 353.134 kb on + strand, within MPMX19_04050at 353.134 kb on + strand, within MPMX19_04050at 353.134 kb on + strand, within MPMX19_04050at 353.134 kb on + strand, within MPMX19_04050at 353.134 kb on + strand, within MPMX19_04050at 353.134 kb on + strand, within MPMX19_04050at 353.134 kb on + strand, within MPMX19_04050at 353.134 kb on + strand, within MPMX19_04050at 353.134 kb on + strand, within MPMX19_04050at 353.134 kb on + strand, within MPMX19_04050at 353.134 kb on + strand, within MPMX19_04050at 353.134 kb on + strand, within MPMX19_04050at 353.135 kb on - strand, within MPMX19_04050at 353.135 kb on - strand, within MPMX19_04050at 353.135 kb on - strand, within MPMX19_04050at 353.135 kb on - strand, within MPMX19_04050at 353.135 kb on - strand, within MPMX19_04050at 353.135 kb on - strand, within MPMX19_04050at 353.135 kb on - strand, within MPMX19_04050at 353.135 kb on - strand, within MPMX19_04050at 353.135 kb on - strand, within MPMX19_04050at 353.135 kb on - strand, within MPMX19_04050at 353.135 kb on - strand, within MPMX19_04050at 353.135 kb on - strand, within MPMX19_04050at 353.135 kb on - strand, within MPMX19_04050at 353.135 kb on - strand, within MPMX19_04050at 353.338 kb on + strand, within MPMX19_04050at 353.338 kb on + strand, within MPMX19_04050at 353.338 kb on + strand, within MPMX19_04050at 353.338 kb on + strand, within MPMX19_04050at 353.338 kb on + strand, within MPMX19_04050at 353.338 kb on + strand, within MPMX19_04050at 353.338 kb on + strand, within MPMX19_04050at 353.338 kb on + strand, within MPMX19_04050at 353.339 kb on - strand, within MPMX19_04050at 353.339 kb on - strand, within MPMX19_04050at 353.339 kb on - strand, within MPMX19_04050at 353.339 kb on - strand, within MPMX19_04050at 353.583 kb on - strandat 353.583 kb on - strandat 353.660 kb on + strandat 353.660 kb on + strandat 353.661 kb on - strandat 353.778 kb on + strandat 353.778 kb on + strandat 353.779 kb on + strandat 353.779 kb on - strandat 353.779 kb on - strandat 353.779 kb on - strandat 353.779 kb on - strandat 353.779 kb on - strandat 353.944 kb on + strand, within MPMX19_04051at 353.945 kb on - strand, within MPMX19_04051at 354.187 kb on + strand, within MPMX19_04051at 354.187 kb on + strand, within MPMX19_04051at 354.187 kb on + strand, within MPMX19_04051at 354.188 kb on - strand, within MPMX19_04051at 354.188 kb on - strand, within MPMX19_04051

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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351,660 + MPMX19_04049 0.40 +0.6
351,661 - MPMX19_04049 0.40 +0.3
351,661 - MPMX19_04049 0.40 -0.7
351,661 - MPMX19_04049 0.40 -0.3
351,789 + MPMX19_04049 0.51 +1.4
351,789 + MPMX19_04049 0.51 +0.1
351,976 - MPMX19_04049 0.67 +0.0
351,976 - MPMX19_04049 0.67 -0.5
351,984 + MPMX19_04049 0.67 -0.7
351,984 + MPMX19_04049 0.67 +1.1
351,984 + MPMX19_04049 0.67 +1.4
351,984 + MPMX19_04049 0.67 -2.4
351,984 + MPMX19_04049 0.67 -0.3
351,984 + MPMX19_04049 0.67 -1.3
351,984 + MPMX19_04049 0.67 -0.7
351,985 - MPMX19_04049 0.67 -2.3
351,985 - MPMX19_04049 0.67 -0.0
351,985 - MPMX19_04049 0.67 +0.1
351,985 - MPMX19_04049 0.67 -1.6
351,985 - MPMX19_04049 0.67 -0.5
351,985 - MPMX19_04049 0.67 +0.0
351,985 - MPMX19_04049 0.67 -0.7
351,985 - MPMX19_04049 0.67 -0.1
351,985 - MPMX19_04049 0.67 -0.8
352,163 + MPMX19_04049 0.82 +0.4
352,163 + MPMX19_04049 0.82 -1.6
352,163 + MPMX19_04049 0.82 -0.9
352,164 - MPMX19_04049 0.83 -0.4
352,164 - MPMX19_04049 0.83 -1.1
352,164 - MPMX19_04049 0.83 +0.1
352,164 - MPMX19_04049 0.83 +1.1
352,164 - MPMX19_04049 0.83 -2.2
352,243 + MPMX19_04049 0.89 -1.3
352,243 + MPMX19_04049 0.89 +0.1
352,244 - MPMX19_04049 0.89 -1.8
352,244 - MPMX19_04049 0.89 -0.5
352,244 - MPMX19_04049 0.89 -0.9
352,508 + +1.2
352,509 - -0.9
352,509 - +0.1
352,529 + -0.8
352,529 + +0.3
352,529 + +0.7
352,529 + +0.4
352,529 + -1.1
352,529 + -1.0
352,529 + -0.5
352,530 - +0.1
352,530 - -1.0
352,530 - -0.7
352,530 - -0.7
352,530 - +0.7
352,530 - +0.9
352,530 - +0.1
352,541 + +0.1
352,541 + +0.9
352,541 + -1.8
352,541 + +0.8
352,541 + +0.1
352,541 + -1.3
352,542 - -1.3
352,578 + -1.3
352,636 + -1.3
352,636 + -2.0
352,636 + -1.8
352,636 + +0.4
352,636 + +0.6
352,636 + -1.5
352,636 + +1.1
352,636 + -0.1
352,636 + -0.3
352,637 - -0.4
352,637 - +0.6
352,637 - -0.4
352,637 - -1.0
352,637 - +0.5
352,637 - -1.2
352,637 - -0.7
352,637 - -0.4
352,681 + +0.1
352,681 + -1.1
352,682 - +0.7
352,709 - MPMX19_04050 0.13 -1.8
352,709 - MPMX19_04050 0.13 +0.7
352,709 - MPMX19_04050 0.13 -0.5
352,709 - MPMX19_04050 0.13 +0.7
352,775 - MPMX19_04050 0.19 -0.5
352,775 - MPMX19_04050 0.19 -1.1
352,775 - MPMX19_04050 0.19 -0.9
352,879 + MPMX19_04050 0.29 +0.3
352,879 + MPMX19_04050 0.29 -0.8
352,879 + MPMX19_04050 0.29 -0.3
352,879 + MPMX19_04050 0.29 -0.5
352,879 + MPMX19_04050 0.29 -0.5
352,879 + MPMX19_04050 0.29 +0.7
352,879 + MPMX19_04050 0.29 +0.3
352,879 + MPMX19_04050 0.29 -1.3
352,879 + MPMX19_04050 0.29 +0.5
352,879 + MPMX19_04050 0.29 -0.2
352,879 + MPMX19_04050 0.29 +0.2
352,879 + MPMX19_04050 0.29 -0.5
352,879 + MPMX19_04050 0.29 -0.3
352,879 + MPMX19_04050 0.29 -0.3
352,879 + MPMX19_04050 0.29 -1.5
352,879 + MPMX19_04050 0.29 -0.4
352,879 + MPMX19_04050 0.29 -0.5
352,879 + MPMX19_04050 0.29 +0.2
352,879 + MPMX19_04050 0.29 +0.1
352,879 + MPMX19_04050 0.29 -0.0
352,879 + MPMX19_04050 0.29 +1.3
352,879 + MPMX19_04050 0.29 -0.5
352,879 + MPMX19_04050 0.29 -0.0
352,879 + MPMX19_04050 0.29 +0.5
352,879 + MPMX19_04050 0.29 -0.1
352,879 + MPMX19_04050 0.29 +0.8
352,879 + MPMX19_04050 0.29 +1.0
352,879 + MPMX19_04050 0.29 -0.7
352,879 + MPMX19_04050 0.29 +0.6
352,879 + MPMX19_04050 0.29 +0.1
352,880 - MPMX19_04050 0.29 -0.1
352,880 - MPMX19_04050 0.29 -0.6
352,880 - MPMX19_04050 0.29 -0.3
352,880 - MPMX19_04050 0.29 -0.1
352,880 - MPMX19_04050 0.29 -1.8
352,880 - MPMX19_04050 0.29 +0.3
352,880 - MPMX19_04050 0.29 -0.5
352,880 - MPMX19_04050 0.29 -2.0
352,880 - MPMX19_04050 0.29 -1.6
352,880 - MPMX19_04050 0.29 +0.9
352,880 - MPMX19_04050 0.29 +1.5
352,880 - MPMX19_04050 0.29 +2.0
352,880 - MPMX19_04050 0.29 -0.0
352,880 - MPMX19_04050 0.29 -0.7
352,880 - MPMX19_04050 0.29 -0.5
352,880 - MPMX19_04050 0.29 +1.0
352,880 - MPMX19_04050 0.29 -1.1
352,880 - MPMX19_04050 0.29 -0.5
352,880 - MPMX19_04050 0.29 +0.4
352,880 - MPMX19_04050 0.29 -0.7
352,880 - MPMX19_04050 0.29 +0.6
352,880 - MPMX19_04050 0.29 +1.2
352,880 - MPMX19_04050 0.29 -0.6
352,880 - MPMX19_04050 0.29 -2.0
352,880 - MPMX19_04050 0.29 -1.0
352,880 - MPMX19_04050 0.29 -0.8
352,880 - MPMX19_04050 0.29 -0.9
352,880 - MPMX19_04050 0.29 +0.5
352,880 - MPMX19_04050 0.29 -0.3
352,880 - MPMX19_04050 0.29 +0.4
352,880 - MPMX19_04050 0.29 -0.5
352,880 - MPMX19_04050 0.29 -2.0
352,881 + MPMX19_04050 0.29 -0.4
352,881 + MPMX19_04050 0.29 -0.6
352,881 + MPMX19_04050 0.29 +0.6
352,881 + MPMX19_04050 0.29 +0.3
352,881 + MPMX19_04050 0.29 -0.3
352,881 + MPMX19_04050 0.29 -1.6
352,882 - MPMX19_04050 0.29 +0.3
352,882 - MPMX19_04050 0.29 -0.9
352,882 - MPMX19_04050 0.29 +1.6
352,951 + MPMX19_04050 0.36 +0.1
352,952 - MPMX19_04050 0.36 +0.7
353,134 + MPMX19_04050 0.54 -0.5
353,134 + MPMX19_04050 0.54 +0.9
353,134 + MPMX19_04050 0.54 +0.3
353,134 + MPMX19_04050 0.54 -2.0
353,134 + MPMX19_04050 0.54 +0.0
353,134 + MPMX19_04050 0.54 +1.4
353,134 + MPMX19_04050 0.54 -0.5
353,134 + MPMX19_04050 0.54 -0.1
353,134 + MPMX19_04050 0.54 -0.2
353,134 + MPMX19_04050 0.54 -1.8
353,134 + MPMX19_04050 0.54 +0.6
353,134 + MPMX19_04050 0.54 -1.0
353,135 - MPMX19_04050 0.54 -2.2
353,135 - MPMX19_04050 0.54 +0.2
353,135 - MPMX19_04050 0.54 -1.0
353,135 - MPMX19_04050 0.54 +0.3
353,135 - MPMX19_04050 0.54 +0.1
353,135 - MPMX19_04050 0.54 +0.2
353,135 - MPMX19_04050 0.54 +0.5
353,135 - MPMX19_04050 0.54 -0.1
353,135 - MPMX19_04050 0.54 -0.6
353,135 - MPMX19_04050 0.54 -0.6
353,135 - MPMX19_04050 0.54 -0.4
353,135 - MPMX19_04050 0.54 +0.9
353,135 - MPMX19_04050 0.54 -0.4
353,135 - MPMX19_04050 0.54 -0.7
353,338 + MPMX19_04050 0.73 -1.3
353,338 + MPMX19_04050 0.73 -0.4
353,338 + MPMX19_04050 0.73 +0.5
353,338 + MPMX19_04050 0.73 +0.9
353,338 + MPMX19_04050 0.73 +1.7
353,338 + MPMX19_04050 0.73 -0.4
353,338 + MPMX19_04050 0.73 +0.9
353,338 + MPMX19_04050 0.73 -0.1
353,339 - MPMX19_04050 0.73 -0.5
353,339 - MPMX19_04050 0.73 -2.7
353,339 - MPMX19_04050 0.73 +0.4
353,339 - MPMX19_04050 0.73 +0.5
353,583 - +0.7
353,583 - +1.0
353,660 + -0.6
353,660 + -1.4
353,661 - -0.8
353,778 + -1.1
353,778 + -0.3
353,779 + -1.6
353,779 - -2.2
353,779 - +1.3
353,779 - +0.0
353,779 - -2.0
353,779 - -2.5
353,944 + MPMX19_04051 0.14 +0.1
353,945 - MPMX19_04051 0.14 +1.1
354,187 + MPMX19_04051 0.37 +1.3
354,187 + MPMX19_04051 0.37 -0.7
354,187 + MPMX19_04051 0.37 -0.8
354,188 - MPMX19_04051 0.37 +1.7
354,188 - MPMX19_04051 0.37 -1.0

Or see this region's nucleotide sequence