Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04029 and MPMX19_04030 are separated by 103 nucleotides MPMX19_04030 and MPMX19_04031 are separated by 1 nucleotides
MPMX19_04029: MPMX19_04029 - Glycine cleavage system transcriptional activator, at 324,889 to 325,812
_04029
MPMX19_04030: MPMX19_04030 - hypothetical protein, at 325,916 to 327,349
_04030
MPMX19_04031: MPMX19_04031 - hypothetical protein, at 327,351 to 329,189
_04031
Position (kb) 325
326
327
328 Strain fitness (log2 ratio) -2
-1
0
1
2 at 325.099 kb on + strand, within MPMX19_04029 at 325.099 kb on + strand, within MPMX19_04029 at 325.100 kb on - strand, within MPMX19_04029 at 325.100 kb on - strand, within MPMX19_04029 at 325.102 kb on + strand, within MPMX19_04029 at 325.102 kb on + strand, within MPMX19_04029 at 325.102 kb on + strand, within MPMX19_04029 at 325.102 kb on + strand, within MPMX19_04029 at 325.102 kb on + strand, within MPMX19_04029 at 325.102 kb on + strand, within MPMX19_04029 at 325.102 kb on + strand, within MPMX19_04029 at 325.102 kb on + strand, within MPMX19_04029 at 325.102 kb on + strand, within MPMX19_04029 at 325.102 kb on + strand, within MPMX19_04029 at 325.102 kb on + strand, within MPMX19_04029 at 325.103 kb on - strand, within MPMX19_04029 at 325.103 kb on - strand, within MPMX19_04029 at 325.103 kb on - strand, within MPMX19_04029 at 325.103 kb on - strand, within MPMX19_04029 at 325.103 kb on - strand, within MPMX19_04029 at 325.103 kb on - strand, within MPMX19_04029 at 325.103 kb on - strand, within MPMX19_04029 at 325.103 kb on - strand, within MPMX19_04029 at 325.171 kb on + strand, within MPMX19_04029 at 325.693 kb on + strand, within MPMX19_04029 at 325.693 kb on + strand, within MPMX19_04029 at 325.693 kb on + strand, within MPMX19_04029 at 325.693 kb on + strand, within MPMX19_04029 at 325.693 kb on + strand, within MPMX19_04029 at 325.693 kb on + strand, within MPMX19_04029 at 325.693 kb on + strand, within MPMX19_04029 at 325.694 kb on - strand, within MPMX19_04029 at 325.696 kb on + strand, within MPMX19_04029 at 325.696 kb on + strand, within MPMX19_04029 at 325.696 kb on + strand, within MPMX19_04029 at 325.696 kb on + strand, within MPMX19_04029 at 325.696 kb on + strand, within MPMX19_04029 at 325.696 kb on + strand, within MPMX19_04029 at 325.696 kb on + strand, within MPMX19_04029 at 325.696 kb on + strand, within MPMX19_04029 at 325.696 kb on + strand, within MPMX19_04029 at 325.697 kb on - strand, within MPMX19_04029 at 325.697 kb on - strand, within MPMX19_04029 at 325.697 kb on - strand, within MPMX19_04029 at 325.697 kb on - strand, within MPMX19_04029 at 325.697 kb on - strand, within MPMX19_04029 at 325.697 kb on - strand, within MPMX19_04029 at 325.697 kb on - strand, within MPMX19_04029 at 325.697 kb on - strand, within MPMX19_04029 at 325.855 kb on + strand at 325.855 kb on + strand at 325.855 kb on + strand at 325.855 kb on + strand at 325.855 kb on + strand at 325.856 kb on - strand at 325.856 kb on - strand at 325.856 kb on - strand at 325.856 kb on - strand at 325.856 kb on - strand at 325.857 kb on + strand at 325.857 kb on + strand at 325.857 kb on + strand at 325.857 kb on + strand at 325.857 kb on + strand at 325.857 kb on + strand at 325.858 kb on - strand at 325.858 kb on - strand at 325.858 kb on - strand at 325.858 kb on - strand at 325.858 kb on - strand at 325.858 kb on - strand at 325.858 kb on - strand at 325.858 kb on - strand at 325.858 kb on - strand at 325.858 kb on - strand at 325.858 kb on - strand at 326.030 kb on + strand at 326.030 kb on + strand at 326.030 kb on + strand at 326.030 kb on + strand at 326.030 kb on + strand at 326.030 kb on + strand at 326.030 kb on + strand at 326.030 kb on + strand at 326.030 kb on + strand at 326.030 kb on + strand at 326.030 kb on + strand at 326.030 kb on + strand at 326.031 kb on - strand at 326.031 kb on - strand at 326.031 kb on - strand at 326.031 kb on - strand at 326.031 kb on - strand at 326.031 kb on - strand at 326.031 kb on - strand at 326.031 kb on - strand at 326.031 kb on - strand at 326.031 kb on - strand at 326.031 kb on - strand at 326.031 kb on - strand at 326.031 kb on - strand at 326.051 kb on + strand at 326.052 kb on - strand at 326.052 kb on - strand at 326.052 kb on - strand at 326.253 kb on - strand, within MPMX19_04030 at 326.255 kb on + strand, within MPMX19_04030 at 326.255 kb on + strand, within MPMX19_04030 at 326.255 kb on + strand, within MPMX19_04030 at 326.255 kb on + strand, within MPMX19_04030 at 326.256 kb on - strand, within MPMX19_04030 at 326.567 kb on + strand, within MPMX19_04030 at 326.567 kb on + strand, within MPMX19_04030 at 326.567 kb on + strand, within MPMX19_04030 at 326.568 kb on - strand, within MPMX19_04030 at 326.568 kb on - strand, within MPMX19_04030 at 326.568 kb on - strand, within MPMX19_04030 at 326.568 kb on - strand, within MPMX19_04030 at 326.568 kb on - strand, within MPMX19_04030 at 326.568 kb on - strand, within MPMX19_04030 at 326.903 kb on + strand, within MPMX19_04030 at 326.903 kb on + strand, within MPMX19_04030 at 326.903 kb on + strand, within MPMX19_04030 at 326.903 kb on + strand, within MPMX19_04030 at 326.904 kb on - strand, within MPMX19_04030 at 326.904 kb on - strand, within MPMX19_04030 at 326.972 kb on + strand, within MPMX19_04030 at 326.972 kb on + strand, within MPMX19_04030 at 326.972 kb on + strand, within MPMX19_04030 at 326.972 kb on + strand, within MPMX19_04030 at 326.972 kb on + strand, within MPMX19_04030 at 326.972 kb on + strand, within MPMX19_04030 at 326.972 kb on + strand, within MPMX19_04030 at 326.972 kb on + strand, within MPMX19_04030 at 326.972 kb on + strand, within MPMX19_04030 at 326.972 kb on + strand, within MPMX19_04030 at 326.972 kb on + strand, within MPMX19_04030 at 326.972 kb on + strand, within MPMX19_04030 at 326.972 kb on + strand, within MPMX19_04030 at 326.972 kb on + strand, within MPMX19_04030 at 326.972 kb on + strand, within MPMX19_04030 at 326.972 kb on + strand, within MPMX19_04030 at 326.973 kb on - strand, within MPMX19_04030 at 326.973 kb on - strand, within MPMX19_04030 at 326.973 kb on - strand, within MPMX19_04030 at 326.973 kb on - strand, within MPMX19_04030 at 326.973 kb on - strand, within MPMX19_04030 at 326.973 kb on - strand, within MPMX19_04030 at 326.973 kb on - strand, within MPMX19_04030 at 326.973 kb on - strand, within MPMX19_04030 at 326.973 kb on - strand, within MPMX19_04030 at 326.973 kb on - strand, within MPMX19_04030 at 326.973 kb on - strand, within MPMX19_04030 at 326.973 kb on - strand, within MPMX19_04030 at 326.973 kb on - strand, within MPMX19_04030 at 326.973 kb on - strand, within MPMX19_04030 at 326.973 kb on - strand, within MPMX19_04030 at 326.973 kb on - strand, within MPMX19_04030 at 326.973 kb on - strand, within MPMX19_04030 at 326.973 kb on - strand, within MPMX19_04030 at 326.973 kb on - strand, within MPMX19_04030 at 326.973 kb on - strand, within MPMX19_04030 at 326.973 kb on - strand, within MPMX19_04030 at 326.973 kb on - strand, within MPMX19_04030 at 326.974 kb on + strand, within MPMX19_04030 at 326.974 kb on + strand, within MPMX19_04030 at 326.974 kb on + strand, within MPMX19_04030 at 326.974 kb on + strand, within MPMX19_04030 at 326.974 kb on + strand, within MPMX19_04030 at 326.974 kb on + strand, within MPMX19_04030 at 326.974 kb on + strand, within MPMX19_04030 at 326.974 kb on + strand, within MPMX19_04030 at 326.974 kb on + strand, within MPMX19_04030 at 326.974 kb on + strand, within MPMX19_04030 at 326.974 kb on + strand, within MPMX19_04030 at 326.974 kb on + strand, within MPMX19_04030 at 326.974 kb on + strand, within MPMX19_04030 at 326.974 kb on + strand, within MPMX19_04030 at 326.974 kb on + strand, within MPMX19_04030 at 326.975 kb on - strand, within MPMX19_04030 at 326.975 kb on - strand, within MPMX19_04030 at 326.975 kb on - strand, within MPMX19_04030 at 326.975 kb on - strand, within MPMX19_04030 at 326.975 kb on - strand, within MPMX19_04030 at 326.975 kb on - strand, within MPMX19_04030 at 326.975 kb on - strand, within MPMX19_04030 at 326.975 kb on - strand, within MPMX19_04030 at 326.975 kb on - strand, within MPMX19_04030 at 326.975 kb on - strand, within MPMX19_04030 at 326.975 kb on - strand, within MPMX19_04030 at 326.975 kb on - strand, within MPMX19_04030 at 326.975 kb on - strand, within MPMX19_04030 at 327.047 kb on + strand, within MPMX19_04030 at 327.048 kb on - strand, within MPMX19_04030 at 327.048 kb on - strand, within MPMX19_04030 at 327.056 kb on + strand, within MPMX19_04030 at 327.057 kb on - strand, within MPMX19_04030 at 327.057 kb on - strand, within MPMX19_04030 at 327.057 kb on - strand, within MPMX19_04030 at 327.057 kb on - strand, within MPMX19_04030 at 327.156 kb on - strand, within MPMX19_04030 at 327.156 kb on - strand, within MPMX19_04030 at 327.156 kb on - strand, within MPMX19_04030 at 327.156 kb on - strand, within MPMX19_04030 at 327.299 kb on + strand at 327.299 kb on + strand at 327.299 kb on + strand at 327.299 kb on + strand at 327.300 kb on - strand at 327.300 kb on - strand at 327.300 kb on - strand at 327.300 kb on - strand at 327.300 kb on - strand at 327.300 kb on - strand at 327.347 kb on + strand at 327.347 kb on + strand at 327.347 kb on + strand at 327.347 kb on + strand at 327.347 kb on + strand at 327.347 kb on + strand at 327.348 kb on - strand at 327.348 kb on - strand at 327.348 kb on - strand at 327.348 kb on - strand at 327.436 kb on + strand at 327.436 kb on + strand at 327.437 kb on - strand at 327.478 kb on + strand at 327.478 kb on + strand at 327.478 kb on + strand at 327.478 kb on + strand at 327.478 kb on + strand at 327.478 kb on + strand at 327.478 kb on + strand at 327.479 kb on - strand at 327.479 kb on - strand at 327.479 kb on - strand at 327.517 kb on + strand at 327.517 kb on + strand at 327.517 kb on + strand at 327.518 kb on - strand at 327.518 kb on - strand at 327.518 kb on - strand at 327.518 kb on - strand at 327.640 kb on + strand, within MPMX19_04031 at 327.640 kb on + strand, within MPMX19_04031 at 327.640 kb on + strand, within MPMX19_04031 at 327.641 kb on - strand, within MPMX19_04031 at 327.641 kb on - strand, within MPMX19_04031 at 327.641 kb on - strand, within MPMX19_04031 at 328.078 kb on + strand, within MPMX19_04031 at 328.078 kb on + strand, within MPMX19_04031 at 328.078 kb on + strand, within MPMX19_04031 at 328.078 kb on + strand, within MPMX19_04031 at 328.079 kb on - strand, within MPMX19_04031 at 328.079 kb on - strand, within MPMX19_04031 at 328.079 kb on - strand, within MPMX19_04031 at 328.175 kb on - strand, within MPMX19_04031 at 328.175 kb on - strand, within MPMX19_04031 at 328.327 kb on + strand, within MPMX19_04031 at 328.327 kb on + strand, within MPMX19_04031
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 325,099 + MPMX19_04029 0.23 +0.1 325,099 + MPMX19_04029 0.23 +0.5 325,100 - MPMX19_04029 0.23 -0.1 325,100 - MPMX19_04029 0.23 -0.2 325,102 + MPMX19_04029 0.23 +0.8 325,102 + MPMX19_04029 0.23 -0.5 325,102 + MPMX19_04029 0.23 -1.2 325,102 + MPMX19_04029 0.23 -0.3 325,102 + MPMX19_04029 0.23 +1.1 325,102 + MPMX19_04029 0.23 +0.1 325,102 + MPMX19_04029 0.23 +0.7 325,102 + MPMX19_04029 0.23 -0.1 325,102 + MPMX19_04029 0.23 -2.4 325,102 + MPMX19_04029 0.23 +0.3 325,102 + MPMX19_04029 0.23 +1.0 325,103 - MPMX19_04029 0.23 -0.9 325,103 - MPMX19_04029 0.23 -1.6 325,103 - MPMX19_04029 0.23 +0.6 325,103 - MPMX19_04029 0.23 -0.3 325,103 - MPMX19_04029 0.23 -1.1 325,103 - MPMX19_04029 0.23 -0.1 325,103 - MPMX19_04029 0.23 +0.4 325,103 - MPMX19_04029 0.23 -0.5 325,171 + MPMX19_04029 0.31 -0.4 325,693 + MPMX19_04029 0.87 +0.2 325,693 + MPMX19_04029 0.87 -0.9 325,693 + MPMX19_04029 0.87 +2.1 325,693 + MPMX19_04029 0.87 +0.0 325,693 + MPMX19_04029 0.87 +0.7 325,693 + MPMX19_04029 0.87 -1.0 325,693 + MPMX19_04029 0.87 +1.3 325,694 - MPMX19_04029 0.87 -1.6 325,696 + MPMX19_04029 0.87 -1.5 325,696 + MPMX19_04029 0.87 +0.7 325,696 + MPMX19_04029 0.87 +0.0 325,696 + MPMX19_04029 0.87 +0.1 325,696 + MPMX19_04029 0.87 -0.6 325,696 + MPMX19_04029 0.87 -1.6 325,696 + MPMX19_04029 0.87 -1.6 325,696 + MPMX19_04029 0.87 -1.2 325,696 + MPMX19_04029 0.87 +0.1 325,697 - MPMX19_04029 0.87 -2.1 325,697 - MPMX19_04029 0.87 -0.4 325,697 - MPMX19_04029 0.87 +1.0 325,697 - MPMX19_04029 0.87 -0.1 325,697 - MPMX19_04029 0.87 -0.2 325,697 - MPMX19_04029 0.87 -0.5 325,697 - MPMX19_04029 0.87 -1.7 325,697 - MPMX19_04029 0.87 +0.7 325,855 + -0.3 325,855 + -0.2 325,855 + -0.6 325,855 + -1.3 325,855 + -0.3 325,856 - +0.1 325,856 - +0.6 325,856 - -0.8 325,856 - +1.5 325,856 - +0.0 325,857 + -1.5 325,857 + -0.0 325,857 + +0.3 325,857 + -0.6 325,857 + +0.2 325,857 + -1.5 325,858 - -0.2 325,858 - -0.5 325,858 - -0.4 325,858 - -0.9 325,858 - -2.0 325,858 - -1.4 325,858 - -0.8 325,858 - -1.0 325,858 - -0.6 325,858 - -0.2 325,858 - -0.3 326,030 + -0.3 326,030 + -1.9 326,030 + -1.1 326,030 + -0.4 326,030 + +1.4 326,030 + +0.4 326,030 + -1.5 326,030 + +0.2 326,030 + +1.1 326,030 + +0.9 326,030 + -1.9 326,030 + -0.3 326,031 - -0.3 326,031 - -2.0 326,031 - -1.1 326,031 - -0.4 326,031 - -0.6 326,031 - -0.9 326,031 - +0.2 326,031 - -0.0 326,031 - +1.5 326,031 - -2.1 326,031 - -0.3 326,031 - +0.4 326,031 - -1.0 326,051 + -0.8 326,052 - -0.8 326,052 - -1.5 326,052 - +0.2 326,253 - MPMX19_04030 0.24 -0.9 326,255 + MPMX19_04030 0.24 -1.4 326,255 + MPMX19_04030 0.24 +1.2 326,255 + MPMX19_04030 0.24 +1.7 326,255 + MPMX19_04030 0.24 +0.7 326,256 - MPMX19_04030 0.24 +0.7 326,567 + MPMX19_04030 0.45 -0.0 326,567 + MPMX19_04030 0.45 +0.9 326,567 + MPMX19_04030 0.45 -1.2 326,568 - MPMX19_04030 0.45 -0.3 326,568 - MPMX19_04030 0.45 +1.1 326,568 - MPMX19_04030 0.45 +1.0 326,568 - MPMX19_04030 0.45 -0.3 326,568 - MPMX19_04030 0.45 +0.9 326,568 - MPMX19_04030 0.45 -1.1 326,903 + MPMX19_04030 0.69 +0.0 326,903 + MPMX19_04030 0.69 -1.6 326,903 + MPMX19_04030 0.69 -1.8 326,903 + MPMX19_04030 0.69 +0.1 326,904 - MPMX19_04030 0.69 -1.7 326,904 - MPMX19_04030 0.69 -0.7 326,972 + MPMX19_04030 0.74 +0.6 326,972 + MPMX19_04030 0.74 -1.2 326,972 + MPMX19_04030 0.74 -2.2 326,972 + MPMX19_04030 0.74 -1.1 326,972 + MPMX19_04030 0.74 +0.1 326,972 + MPMX19_04030 0.74 -0.5 326,972 + MPMX19_04030 0.74 +0.4 326,972 + MPMX19_04030 0.74 -0.5 326,972 + MPMX19_04030 0.74 -1.0 326,972 + MPMX19_04030 0.74 -0.6 326,972 + MPMX19_04030 0.74 +0.4 326,972 + MPMX19_04030 0.74 -0.0 326,972 + MPMX19_04030 0.74 +0.2 326,972 + MPMX19_04030 0.74 -0.3 326,972 + MPMX19_04030 0.74 -0.7 326,972 + MPMX19_04030 0.74 +1.6 326,973 - MPMX19_04030 0.74 -1.1 326,973 - MPMX19_04030 0.74 +0.8 326,973 - MPMX19_04030 0.74 -0.9 326,973 - MPMX19_04030 0.74 -1.3 326,973 - MPMX19_04030 0.74 +1.2 326,973 - MPMX19_04030 0.74 -0.3 326,973 - MPMX19_04030 0.74 -0.1 326,973 - MPMX19_04030 0.74 +0.3 326,973 - MPMX19_04030 0.74 -0.6 326,973 - MPMX19_04030 0.74 -1.1 326,973 - MPMX19_04030 0.74 +0.3 326,973 - MPMX19_04030 0.74 -0.6 326,973 - MPMX19_04030 0.74 -1.0 326,973 - MPMX19_04030 0.74 -0.9 326,973 - MPMX19_04030 0.74 -0.0 326,973 - MPMX19_04030 0.74 +0.2 326,973 - MPMX19_04030 0.74 -0.5 326,973 - MPMX19_04030 0.74 -0.8 326,973 - MPMX19_04030 0.74 +1.7 326,973 - MPMX19_04030 0.74 +0.6 326,973 - MPMX19_04030 0.74 -0.3 326,973 - MPMX19_04030 0.74 -1.4 326,974 + MPMX19_04030 0.74 +0.2 326,974 + MPMX19_04030 0.74 -2.5 326,974 + MPMX19_04030 0.74 -0.8 326,974 + MPMX19_04030 0.74 +0.4 326,974 + MPMX19_04030 0.74 -1.3 326,974 + MPMX19_04030 0.74 -0.6 326,974 + MPMX19_04030 0.74 +0.0 326,974 + MPMX19_04030 0.74 +0.4 326,974 + MPMX19_04030 0.74 +0.7 326,974 + MPMX19_04030 0.74 -1.3 326,974 + MPMX19_04030 0.74 -0.4 326,974 + MPMX19_04030 0.74 +0.7 326,974 + MPMX19_04030 0.74 +0.3 326,974 + MPMX19_04030 0.74 -1.8 326,974 + MPMX19_04030 0.74 -0.0 326,975 - MPMX19_04030 0.74 -0.1 326,975 - MPMX19_04030 0.74 -0.2 326,975 - MPMX19_04030 0.74 -0.5 326,975 - MPMX19_04030 0.74 -0.1 326,975 - MPMX19_04030 0.74 -0.5 326,975 - MPMX19_04030 0.74 -0.2 326,975 - MPMX19_04030 0.74 -0.5 326,975 - MPMX19_04030 0.74 -0.4 326,975 - MPMX19_04030 0.74 +0.8 326,975 - MPMX19_04030 0.74 -0.8 326,975 - MPMX19_04030 0.74 +1.2 326,975 - MPMX19_04030 0.74 -2.6 326,975 - MPMX19_04030 0.74 -0.3 327,047 + MPMX19_04030 0.79 -1.2 327,048 - MPMX19_04030 0.79 +0.6 327,048 - MPMX19_04030 0.79 -1.1 327,056 + MPMX19_04030 0.79 -0.4 327,057 - MPMX19_04030 0.80 -2.0 327,057 - MPMX19_04030 0.80 -1.7 327,057 - MPMX19_04030 0.80 -0.1 327,057 - MPMX19_04030 0.80 -0.3 327,156 - MPMX19_04030 0.86 +0.1 327,156 - MPMX19_04030 0.86 -0.3 327,156 - MPMX19_04030 0.86 -1.5 327,156 - MPMX19_04030 0.86 -0.5 327,299 + -0.8 327,299 + -2.4 327,299 + -0.1 327,299 + -0.7 327,300 - +0.4 327,300 - -1.5 327,300 - +1.4 327,300 - -0.9 327,300 - -1.0 327,300 - -0.9 327,347 + -1.6 327,347 + -1.4 327,347 + -1.6 327,347 + +0.7 327,347 + +0.4 327,347 + +0.3 327,348 - +0.2 327,348 - -1.1 327,348 - -1.2 327,348 - -1.3 327,436 + +0.5 327,436 + -0.6 327,437 - -0.7 327,478 + +0.4 327,478 + -1.3 327,478 + +1.7 327,478 + +0.4 327,478 + -0.3 327,478 + +0.5 327,478 + -0.3 327,479 - +1.1 327,479 - -0.7 327,479 - +0.5 327,517 + -1.1 327,517 + +0.3 327,517 + +1.1 327,518 - -1.1 327,518 - -0.2 327,518 - -0.4 327,518 - -1.3 327,640 + MPMX19_04031 0.16 +0.7 327,640 + MPMX19_04031 0.16 +1.7 327,640 + MPMX19_04031 0.16 -0.5 327,641 - MPMX19_04031 0.16 +0.2 327,641 - MPMX19_04031 0.16 -0.2 327,641 - MPMX19_04031 0.16 -1.6 328,078 + MPMX19_04031 0.40 -2.1 328,078 + MPMX19_04031 0.40 -0.2 328,078 + MPMX19_04031 0.40 -0.7 328,078 + MPMX19_04031 0.40 +1.7 328,079 - MPMX19_04031 0.40 +0.8 328,079 - MPMX19_04031 0.40 +0.3 328,079 - MPMX19_04031 0.40 -1.2 328,175 - MPMX19_04031 0.45 +0.4 328,175 - MPMX19_04031 0.45 -0.1 328,327 + MPMX19_04031 0.53 -0.4 328,327 + MPMX19_04031 0.53 -2.1
Or see this region's nucleotide sequence