Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03958

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03957 and MPMX19_03958 are separated by 71 nucleotidesMPMX19_03958 and MPMX19_03959 are separated by 120 nucleotidesMPMX19_03959 and MPMX19_03960 are separated by 184 nucleotides MPMX19_03957: MPMX19_03957 - Phenylacetate-coenzyme A ligase, at 245,984 to 247,213 _03957 MPMX19_03958: MPMX19_03958 - Disulfide-bond oxidoreductase YfcG, at 247,285 to 247,908 _03958 MPMX19_03959: MPMX19_03959 - hypothetical protein, at 248,029 to 248,265 _03959 MPMX19_03960: MPMX19_03960 - Beta-lactamase OXY-2, at 248,450 to 249,355 _03960 Position (kb) 247 248Strain fitness (log2 ratio) -2 -1 0 1at 246.378 kb on - strand, within MPMX19_03957at 246.378 kb on - strand, within MPMX19_03957at 246.506 kb on + strand, within MPMX19_03957at 246.506 kb on + strand, within MPMX19_03957at 246.507 kb on - strand, within MPMX19_03957at 246.507 kb on - strand, within MPMX19_03957at 246.507 kb on - strand, within MPMX19_03957at 246.608 kb on + strand, within MPMX19_03957at 246.608 kb on + strand, within MPMX19_03957at 246.608 kb on + strand, within MPMX19_03957at 246.608 kb on + strand, within MPMX19_03957at 246.609 kb on - strand, within MPMX19_03957at 246.609 kb on - strand, within MPMX19_03957at 246.609 kb on - strand, within MPMX19_03957at 246.609 kb on - strand, within MPMX19_03957at 246.609 kb on - strand, within MPMX19_03957at 246.609 kb on - strand, within MPMX19_03957at 246.609 kb on - strand, within MPMX19_03957at 246.632 kb on + strand, within MPMX19_03957at 246.632 kb on + strand, within MPMX19_03957at 246.632 kb on + strand, within MPMX19_03957at 246.632 kb on + strand, within MPMX19_03957at 246.632 kb on + strand, within MPMX19_03957at 246.632 kb on + strand, within MPMX19_03957at 246.632 kb on + strand, within MPMX19_03957at 246.632 kb on + strand, within MPMX19_03957at 246.633 kb on - strand, within MPMX19_03957at 246.633 kb on - strand, within MPMX19_03957at 246.633 kb on - strand, within MPMX19_03957at 246.633 kb on - strand, within MPMX19_03957at 246.633 kb on - strand, within MPMX19_03957at 246.633 kb on - strand, within MPMX19_03957at 246.633 kb on - strand, within MPMX19_03957at 246.633 kb on - strand, within MPMX19_03957at 246.633 kb on - strand, within MPMX19_03957at 246.633 kb on - strand, within MPMX19_03957at 246.633 kb on - strand, within MPMX19_03957at 246.633 kb on - strand, within MPMX19_03957at 246.633 kb on - strand, within MPMX19_03957at 246.633 kb on - strand, within MPMX19_03957at 246.633 kb on - strand, within MPMX19_03957at 246.633 kb on - strand, within MPMX19_03957at 246.665 kb on + strand, within MPMX19_03957at 246.695 kb on + strand, within MPMX19_03957at 246.695 kb on + strand, within MPMX19_03957at 246.827 kb on + strand, within MPMX19_03957at 246.828 kb on - strand, within MPMX19_03957at 246.828 kb on - strand, within MPMX19_03957at 247.281 kb on + strandat 247.281 kb on + strandat 247.281 kb on + strandat 247.281 kb on + strandat 247.281 kb on + strandat 247.281 kb on + strandat 247.281 kb on + strandat 247.281 kb on + strandat 247.281 kb on + strandat 247.281 kb on + strandat 247.282 kb on - strandat 247.319 kb on + strandat 247.319 kb on + strandat 247.319 kb on + strandat 247.319 kb on + strandat 247.319 kb on + strandat 247.319 kb on + strandat 247.319 kb on + strandat 247.319 kb on + strandat 247.319 kb on + strandat 247.319 kb on + strandat 247.319 kb on + strandat 247.319 kb on + strandat 247.320 kb on - strandat 247.320 kb on - strandat 247.320 kb on - strandat 247.320 kb on - strandat 247.320 kb on - strandat 247.320 kb on - strandat 247.320 kb on - strandat 247.320 kb on - strandat 247.320 kb on - strandat 247.320 kb on - strandat 247.320 kb on - strandat 247.331 kb on + strandat 247.332 kb on - strandat 247.332 kb on - strandat 247.332 kb on - strandat 247.332 kb on - strandat 247.379 kb on + strand, within MPMX19_03958at 247.380 kb on - strand, within MPMX19_03958at 247.380 kb on - strand, within MPMX19_03958at 247.469 kb on + strand, within MPMX19_03958at 247.469 kb on + strand, within MPMX19_03958at 247.469 kb on + strand, within MPMX19_03958at 247.469 kb on + strand, within MPMX19_03958at 247.469 kb on + strand, within MPMX19_03958at 247.469 kb on + strand, within MPMX19_03958at 247.469 kb on + strand, within MPMX19_03958at 247.469 kb on + strand, within MPMX19_03958at 247.469 kb on + strand, within MPMX19_03958at 247.469 kb on + strand, within MPMX19_03958at 247.469 kb on + strand, within MPMX19_03958at 247.469 kb on + strand, within MPMX19_03958at 247.469 kb on + strand, within MPMX19_03958at 247.469 kb on + strand, within MPMX19_03958at 247.469 kb on + strand, within MPMX19_03958at 247.469 kb on + strand, within MPMX19_03958at 247.469 kb on + strand, within MPMX19_03958at 247.469 kb on + strand, within MPMX19_03958at 247.469 kb on + strand, within MPMX19_03958at 247.469 kb on + strand, within MPMX19_03958at 247.469 kb on + strand, within MPMX19_03958at 247.470 kb on - strand, within MPMX19_03958at 247.470 kb on - strand, within MPMX19_03958at 247.470 kb on - strand, within MPMX19_03958at 247.470 kb on - strand, within MPMX19_03958at 247.470 kb on - strand, within MPMX19_03958at 247.470 kb on - strand, within MPMX19_03958at 247.470 kb on - strand, within MPMX19_03958at 247.470 kb on - strand, within MPMX19_03958at 247.470 kb on - strand, within MPMX19_03958at 247.470 kb on - strand, within MPMX19_03958at 247.685 kb on + strand, within MPMX19_03958at 247.685 kb on + strand, within MPMX19_03958at 247.685 kb on + strand, within MPMX19_03958at 247.685 kb on + strand, within MPMX19_03958at 247.685 kb on + strand, within MPMX19_03958at 247.685 kb on + strand, within MPMX19_03958at 247.685 kb on + strand, within MPMX19_03958at 247.686 kb on - strand, within MPMX19_03958at 247.686 kb on - strand, within MPMX19_03958at 247.686 kb on - strand, within MPMX19_03958at 247.686 kb on - strand, within MPMX19_03958at 247.686 kb on - strand, within MPMX19_03958at 247.686 kb on - strand, within MPMX19_03958at 247.686 kb on - strand, within MPMX19_03958at 247.686 kb on - strand, within MPMX19_03958at 247.770 kb on - strand, within MPMX19_03958at 247.770 kb on - strand, within MPMX19_03958at 247.770 kb on - strand, within MPMX19_03958at 247.770 kb on - strand, within MPMX19_03958at 247.815 kb on - strand, within MPMX19_03958at 247.886 kb on + strandat 247.887 kb on - strandat 248.120 kb on + strand, within MPMX19_03959at 248.121 kb on - strand, within MPMX19_03959at 248.121 kb on - strand, within MPMX19_03959at 248.175 kb on + strand, within MPMX19_03959at 248.175 kb on + strand, within MPMX19_03959at 248.321 kb on + strandat 248.321 kb on + strandat 248.322 kb on - strandat 248.352 kb on + strandat 248.352 kb on + strandat 248.352 kb on + strandat 248.358 kb on + strandat 248.359 kb on - strandat 248.359 kb on - strandat 248.411 kb on + strandat 248.411 kb on + strandat 248.412 kb on - strandat 248.548 kb on + strand, within MPMX19_03960at 248.549 kb on - strand, within MPMX19_03960

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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246,378 - MPMX19_03957 0.32 -1.6
246,378 - MPMX19_03957 0.32 -1.1
246,506 + MPMX19_03957 0.42 -1.3
246,506 + MPMX19_03957 0.42 -0.9
246,507 - MPMX19_03957 0.43 -0.2
246,507 - MPMX19_03957 0.43 -0.2
246,507 - MPMX19_03957 0.43 +0.7
246,608 + MPMX19_03957 0.51 +0.5
246,608 + MPMX19_03957 0.51 -0.1
246,608 + MPMX19_03957 0.51 -0.6
246,608 + MPMX19_03957 0.51 -0.4
246,609 - MPMX19_03957 0.51 -0.9
246,609 - MPMX19_03957 0.51 +0.6
246,609 - MPMX19_03957 0.51 -1.0
246,609 - MPMX19_03957 0.51 -1.3
246,609 - MPMX19_03957 0.51 -1.4
246,609 - MPMX19_03957 0.51 -0.6
246,609 - MPMX19_03957 0.51 -0.2
246,632 + MPMX19_03957 0.53 -0.5
246,632 + MPMX19_03957 0.53 -0.9
246,632 + MPMX19_03957 0.53 -1.3
246,632 + MPMX19_03957 0.53 -0.3
246,632 + MPMX19_03957 0.53 -1.1
246,632 + MPMX19_03957 0.53 -0.6
246,632 + MPMX19_03957 0.53 -1.9
246,632 + MPMX19_03957 0.53 -0.6
246,633 - MPMX19_03957 0.53 +1.2
246,633 - MPMX19_03957 0.53 -0.3
246,633 - MPMX19_03957 0.53 +0.6
246,633 - MPMX19_03957 0.53 -0.2
246,633 - MPMX19_03957 0.53 -1.6
246,633 - MPMX19_03957 0.53 -1.0
246,633 - MPMX19_03957 0.53 -1.4
246,633 - MPMX19_03957 0.53 -2.0
246,633 - MPMX19_03957 0.53 +0.3
246,633 - MPMX19_03957 0.53 -2.1
246,633 - MPMX19_03957 0.53 -0.0
246,633 - MPMX19_03957 0.53 +0.1
246,633 - MPMX19_03957 0.53 -0.6
246,633 - MPMX19_03957 0.53 -1.1
246,633 - MPMX19_03957 0.53 +0.4
246,633 - MPMX19_03957 0.53 +0.1
246,665 + MPMX19_03957 0.55 -0.6
246,695 + MPMX19_03957 0.58 -0.6
246,695 + MPMX19_03957 0.58 -0.3
246,827 + MPMX19_03957 0.69 +0.4
246,828 - MPMX19_03957 0.69 +1.2
246,828 - MPMX19_03957 0.69 -0.5
247,281 + +0.5
247,281 + +0.0
247,281 + +0.5
247,281 + +0.5
247,281 + -0.6
247,281 + -0.3
247,281 + -0.9
247,281 + -0.9
247,281 + -0.3
247,281 + -0.4
247,282 - -0.3
247,319 + -0.1
247,319 + +0.6
247,319 + -0.9
247,319 + -0.3
247,319 + -0.3
247,319 + -1.2
247,319 + -0.1
247,319 + -0.2
247,319 + -0.5
247,319 + -1.1
247,319 + +1.0
247,319 + +0.2
247,320 - -1.3
247,320 - -0.6
247,320 - -0.7
247,320 - +1.1
247,320 - -0.4
247,320 - +0.1
247,320 - +0.1
247,320 - -0.6
247,320 - -0.4
247,320 - -0.6
247,320 - +0.1
247,331 + +0.5
247,332 - -0.6
247,332 - +0.1
247,332 - -1.3
247,332 - +0.5
247,379 + MPMX19_03958 0.15 +0.1
247,380 - MPMX19_03958 0.15 -1.6
247,380 - MPMX19_03958 0.15 -1.0
247,469 + MPMX19_03958 0.29 +0.7
247,469 + MPMX19_03958 0.29 -0.9
247,469 + MPMX19_03958 0.29 +0.1
247,469 + MPMX19_03958 0.29 +0.5
247,469 + MPMX19_03958 0.29 -1.4
247,469 + MPMX19_03958 0.29 -1.4
247,469 + MPMX19_03958 0.29 +0.0
247,469 + MPMX19_03958 0.29 -0.2
247,469 + MPMX19_03958 0.29 -0.7
247,469 + MPMX19_03958 0.29 -0.5
247,469 + MPMX19_03958 0.29 -1.6
247,469 + MPMX19_03958 0.29 +0.9
247,469 + MPMX19_03958 0.29 +0.7
247,469 + MPMX19_03958 0.29 -0.6
247,469 + MPMX19_03958 0.29 -0.5
247,469 + MPMX19_03958 0.29 -1.3
247,469 + MPMX19_03958 0.29 -2.2
247,469 + MPMX19_03958 0.29 -0.5
247,469 + MPMX19_03958 0.29 -0.2
247,469 + MPMX19_03958 0.29 -1.3
247,469 + MPMX19_03958 0.29 +0.4
247,470 - MPMX19_03958 0.30 -1.3
247,470 - MPMX19_03958 0.30 +0.7
247,470 - MPMX19_03958 0.30 -0.4
247,470 - MPMX19_03958 0.30 -1.2
247,470 - MPMX19_03958 0.30 -0.3
247,470 - MPMX19_03958 0.30 -1.5
247,470 - MPMX19_03958 0.30 -0.3
247,470 - MPMX19_03958 0.30 +0.1
247,470 - MPMX19_03958 0.30 -1.1
247,470 - MPMX19_03958 0.30 -0.1
247,685 + MPMX19_03958 0.64 +0.1
247,685 + MPMX19_03958 0.64 -1.6
247,685 + MPMX19_03958 0.64 -0.7
247,685 + MPMX19_03958 0.64 -1.7
247,685 + MPMX19_03958 0.64 -0.7
247,685 + MPMX19_03958 0.64 -2.3
247,685 + MPMX19_03958 0.64 -0.4
247,686 - MPMX19_03958 0.64 -1.9
247,686 - MPMX19_03958 0.64 +0.6
247,686 - MPMX19_03958 0.64 -0.7
247,686 - MPMX19_03958 0.64 -0.2
247,686 - MPMX19_03958 0.64 +0.1
247,686 - MPMX19_03958 0.64 +1.1
247,686 - MPMX19_03958 0.64 -0.3
247,686 - MPMX19_03958 0.64 +0.9
247,770 - MPMX19_03958 0.78 +0.2
247,770 - MPMX19_03958 0.78 -1.0
247,770 - MPMX19_03958 0.78 -0.9
247,770 - MPMX19_03958 0.78 -0.0
247,815 - MPMX19_03958 0.85 -1.3
247,886 + -0.5
247,887 - -0.3
248,120 + MPMX19_03959 0.38 -0.9
248,121 - MPMX19_03959 0.39 -0.8
248,121 - MPMX19_03959 0.39 -0.1
248,175 + MPMX19_03959 0.62 -1.1
248,175 + MPMX19_03959 0.62 +0.7
248,321 + -1.3
248,321 + +0.1
248,322 - -0.9
248,352 + -0.7
248,352 + +0.5
248,352 + -1.1
248,358 + +1.1
248,359 - +0.3
248,359 - +0.5
248,411 + -2.5
248,411 + +0.4
248,412 - -0.1
248,548 + MPMX19_03960 0.11 -0.7
248,549 - MPMX19_03960 0.11 -1.3

Or see this region's nucleotide sequence