Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03927

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03926 and MPMX19_03927 are separated by 75 nucleotidesMPMX19_03927 and MPMX19_03928 are separated by 121 nucleotides MPMX19_03926: MPMX19_03926 - hypothetical protein, at 203,896 to 205,149 _03926 MPMX19_03927: MPMX19_03927 - HTH-type transcriptional activator CmpR, at 205,225 to 206,112 _03927 MPMX19_03928: MPMX19_03928 - Sensor histidine kinase RcsC, at 206,234 to 208,693 _03928 Position (kb) 205 206 207Strain fitness (log2 ratio) -2 -1 0 1 2at 204.333 kb on + strand, within MPMX19_03926at 204.333 kb on + strand, within MPMX19_03926at 204.333 kb on + strand, within MPMX19_03926at 204.333 kb on + strand, within MPMX19_03926at 204.333 kb on + strand, within MPMX19_03926at 204.333 kb on + strand, within MPMX19_03926at 204.334 kb on - strand, within MPMX19_03926at 204.334 kb on - strand, within MPMX19_03926at 204.630 kb on - strand, within MPMX19_03926at 204.630 kb on - strand, within MPMX19_03926at 204.677 kb on + strand, within MPMX19_03926at 204.677 kb on + strand, within MPMX19_03926at 204.770 kb on + strand, within MPMX19_03926at 204.770 kb on + strand, within MPMX19_03926at 204.770 kb on + strand, within MPMX19_03926at 204.770 kb on + strand, within MPMX19_03926at 204.770 kb on + strand, within MPMX19_03926at 204.770 kb on + strand, within MPMX19_03926at 204.770 kb on + strand, within MPMX19_03926at 204.770 kb on + strand, within MPMX19_03926at 204.770 kb on + strand, within MPMX19_03926at 204.770 kb on + strand, within MPMX19_03926at 204.770 kb on + strand, within MPMX19_03926at 204.770 kb on + strand, within MPMX19_03926at 204.770 kb on + strand, within MPMX19_03926at 204.770 kb on + strand, within MPMX19_03926at 204.770 kb on + strand, within MPMX19_03926at 204.770 kb on + strand, within MPMX19_03926at 204.770 kb on + strand, within MPMX19_03926at 204.770 kb on + strand, within MPMX19_03926at 204.770 kb on + strand, within MPMX19_03926at 204.770 kb on + strand, within MPMX19_03926at 204.770 kb on + strand, within MPMX19_03926at 204.770 kb on + strand, within MPMX19_03926at 204.770 kb on + strand, within MPMX19_03926at 204.770 kb on + strand, within MPMX19_03926at 204.770 kb on + strand, within MPMX19_03926at 204.771 kb on - strand, within MPMX19_03926at 204.771 kb on - strand, within MPMX19_03926at 204.771 kb on - strand, within MPMX19_03926at 204.771 kb on - strand, within MPMX19_03926at 204.771 kb on - strand, within MPMX19_03926at 204.771 kb on - strand, within MPMX19_03926at 204.771 kb on - strand, within MPMX19_03926at 204.771 kb on - strand, within MPMX19_03926at 204.771 kb on - strand, within MPMX19_03926at 204.771 kb on - strand, within MPMX19_03926at 204.771 kb on - strand, within MPMX19_03926at 204.771 kb on - strand, within MPMX19_03926at 204.771 kb on - strand, within MPMX19_03926at 204.771 kb on - strand, within MPMX19_03926at 204.771 kb on - strand, within MPMX19_03926at 204.771 kb on - strand, within MPMX19_03926at 204.771 kb on - strand, within MPMX19_03926at 204.771 kb on - strand, within MPMX19_03926at 204.771 kb on - strand, within MPMX19_03926at 204.771 kb on - strand, within MPMX19_03926at 204.771 kb on - strand, within MPMX19_03926at 204.771 kb on - strand, within MPMX19_03926at 204.771 kb on - strand, within MPMX19_03926at 204.771 kb on - strand, within MPMX19_03926at 204.948 kb on - strand, within MPMX19_03926at 205.034 kb on + strandat 205.034 kb on + strandat 205.034 kb on + strandat 205.034 kb on + strandat 205.034 kb on + strandat 205.034 kb on + strandat 205.034 kb on + strandat 205.034 kb on + strandat 205.035 kb on - strandat 205.035 kb on - strandat 205.035 kb on - strandat 205.035 kb on - strandat 205.035 kb on - strandat 205.208 kb on + strandat 205.209 kb on - strandat 205.539 kb on + strand, within MPMX19_03927at 205.539 kb on + strand, within MPMX19_03927at 205.539 kb on + strand, within MPMX19_03927at 205.539 kb on + strand, within MPMX19_03927at 205.539 kb on + strand, within MPMX19_03927at 205.539 kb on + strand, within MPMX19_03927at 205.539 kb on + strand, within MPMX19_03927at 205.539 kb on + strand, within MPMX19_03927at 205.539 kb on + strand, within MPMX19_03927at 205.539 kb on + strand, within MPMX19_03927at 205.539 kb on + strand, within MPMX19_03927at 205.539 kb on + strand, within MPMX19_03927at 205.539 kb on + strand, within MPMX19_03927at 205.540 kb on - strand, within MPMX19_03927at 205.540 kb on - strand, within MPMX19_03927at 205.540 kb on - strand, within MPMX19_03927at 205.540 kb on - strand, within MPMX19_03927at 205.540 kb on - strand, within MPMX19_03927at 205.540 kb on - strand, within MPMX19_03927at 205.540 kb on - strand, within MPMX19_03927at 205.540 kb on - strand, within MPMX19_03927at 205.540 kb on - strand, within MPMX19_03927at 205.540 kb on - strand, within MPMX19_03927at 205.540 kb on - strand, within MPMX19_03927at 205.543 kb on + strand, within MPMX19_03927at 205.543 kb on + strand, within MPMX19_03927at 205.543 kb on + strand, within MPMX19_03927at 205.543 kb on + strand, within MPMX19_03927at 205.544 kb on - strand, within MPMX19_03927at 205.813 kb on + strand, within MPMX19_03927at 205.814 kb on - strand, within MPMX19_03927at 205.814 kb on - strand, within MPMX19_03927at 206.064 kb on + strandat 206.065 kb on - strandat 206.065 kb on - strandat 206.105 kb on + strandat 206.105 kb on + strandat 206.105 kb on + strandat 206.105 kb on + strandat 206.106 kb on - strandat 206.106 kb on - strandat 206.106 kb on - strandat 206.123 kb on + strandat 206.171 kb on + strandat 206.172 kb on - strandat 206.176 kb on + strandat 206.233 kb on + strandat 206.233 kb on + strandat 206.234 kb on - strandat 206.234 kb on - strandat 206.234 kb on - strandat 206.234 kb on - strandat 206.307 kb on + strandat 206.928 kb on - strand, within MPMX19_03928at 206.939 kb on + strand, within MPMX19_03928at 206.939 kb on + strand, within MPMX19_03928at 206.939 kb on + strand, within MPMX19_03928at 206.939 kb on + strand, within MPMX19_03928at 206.939 kb on + strand, within MPMX19_03928at 206.939 kb on + strand, within MPMX19_03928at 206.939 kb on + strand, within MPMX19_03928at 206.939 kb on + strand, within MPMX19_03928at 206.940 kb on - strand, within MPMX19_03928at 206.940 kb on - strand, within MPMX19_03928at 206.940 kb on - strand, within MPMX19_03928at 206.940 kb on - strand, within MPMX19_03928at 206.940 kb on - strand, within MPMX19_03928at 206.940 kb on - strand, within MPMX19_03928at 206.940 kb on - strand, within MPMX19_03928at 207.056 kb on - strand, within MPMX19_03928

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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204,333 + MPMX19_03926 0.35 -1.2
204,333 + MPMX19_03926 0.35 +0.6
204,333 + MPMX19_03926 0.35 -2.7
204,333 + MPMX19_03926 0.35 -0.1
204,333 + MPMX19_03926 0.35 -0.3
204,333 + MPMX19_03926 0.35 +0.7
204,334 - MPMX19_03926 0.35 -1.4
204,334 - MPMX19_03926 0.35 -0.1
204,630 - MPMX19_03926 0.59 -1.7
204,630 - MPMX19_03926 0.59 +1.3
204,677 + MPMX19_03926 0.62 +0.9
204,677 + MPMX19_03926 0.62 -0.6
204,770 + MPMX19_03926 0.70 -0.6
204,770 + MPMX19_03926 0.70 -1.9
204,770 + MPMX19_03926 0.70 +0.1
204,770 + MPMX19_03926 0.70 -1.3
204,770 + MPMX19_03926 0.70 +1.0
204,770 + MPMX19_03926 0.70 -0.1
204,770 + MPMX19_03926 0.70 -0.9
204,770 + MPMX19_03926 0.70 +0.5
204,770 + MPMX19_03926 0.70 -1.0
204,770 + MPMX19_03926 0.70 -0.7
204,770 + MPMX19_03926 0.70 -0.4
204,770 + MPMX19_03926 0.70 +0.6
204,770 + MPMX19_03926 0.70 -0.3
204,770 + MPMX19_03926 0.70 -1.5
204,770 + MPMX19_03926 0.70 -0.3
204,770 + MPMX19_03926 0.70 +0.6
204,770 + MPMX19_03926 0.70 -0.6
204,770 + MPMX19_03926 0.70 +1.7
204,770 + MPMX19_03926 0.70 +0.3
204,770 + MPMX19_03926 0.70 -0.6
204,770 + MPMX19_03926 0.70 +0.7
204,770 + MPMX19_03926 0.70 +1.7
204,770 + MPMX19_03926 0.70 +0.4
204,770 + MPMX19_03926 0.70 -0.2
204,770 + MPMX19_03926 0.70 +0.2
204,771 - MPMX19_03926 0.70 +1.7
204,771 - MPMX19_03926 0.70 +0.3
204,771 - MPMX19_03926 0.70 +0.0
204,771 - MPMX19_03926 0.70 -0.7
204,771 - MPMX19_03926 0.70 +0.6
204,771 - MPMX19_03926 0.70 -0.2
204,771 - MPMX19_03926 0.70 -0.3
204,771 - MPMX19_03926 0.70 -0.9
204,771 - MPMX19_03926 0.70 +0.1
204,771 - MPMX19_03926 0.70 +0.6
204,771 - MPMX19_03926 0.70 +0.8
204,771 - MPMX19_03926 0.70 +0.4
204,771 - MPMX19_03926 0.70 -2.2
204,771 - MPMX19_03926 0.70 -0.3
204,771 - MPMX19_03926 0.70 -0.7
204,771 - MPMX19_03926 0.70 +0.4
204,771 - MPMX19_03926 0.70 +1.1
204,771 - MPMX19_03926 0.70 +0.3
204,771 - MPMX19_03926 0.70 -1.3
204,771 - MPMX19_03926 0.70 -0.7
204,771 - MPMX19_03926 0.70 -0.2
204,771 - MPMX19_03926 0.70 -0.9
204,771 - MPMX19_03926 0.70 -0.4
204,771 - MPMX19_03926 0.70 -0.6
204,948 - MPMX19_03926 0.84 +0.6
205,034 + +0.7
205,034 + +0.1
205,034 + -1.0
205,034 + +0.5
205,034 + -0.3
205,034 + -0.1
205,034 + +0.3
205,034 + +0.3
205,035 - +0.1
205,035 - -0.4
205,035 - +0.6
205,035 - +1.7
205,035 - +0.2
205,208 + -0.9
205,209 - -1.0
205,539 + MPMX19_03927 0.35 +0.5
205,539 + MPMX19_03927 0.35 -0.0
205,539 + MPMX19_03927 0.35 -1.0
205,539 + MPMX19_03927 0.35 +1.0
205,539 + MPMX19_03927 0.35 -1.3
205,539 + MPMX19_03927 0.35 -0.4
205,539 + MPMX19_03927 0.35 +0.6
205,539 + MPMX19_03927 0.35 +0.7
205,539 + MPMX19_03927 0.35 +0.1
205,539 + MPMX19_03927 0.35 -0.0
205,539 + MPMX19_03927 0.35 +2.7
205,539 + MPMX19_03927 0.35 -0.3
205,539 + MPMX19_03927 0.35 +2.2
205,540 - MPMX19_03927 0.35 -2.7
205,540 - MPMX19_03927 0.35 -0.6
205,540 - MPMX19_03927 0.35 -2.4
205,540 - MPMX19_03927 0.35 -0.3
205,540 - MPMX19_03927 0.35 -0.5
205,540 - MPMX19_03927 0.35 -0.1
205,540 - MPMX19_03927 0.35 +0.8
205,540 - MPMX19_03927 0.35 +0.2
205,540 - MPMX19_03927 0.35 -0.1
205,540 - MPMX19_03927 0.35 +0.7
205,540 - MPMX19_03927 0.35 -0.7
205,543 + MPMX19_03927 0.36 +1.3
205,543 + MPMX19_03927 0.36 -1.2
205,543 + MPMX19_03927 0.36 +0.6
205,543 + MPMX19_03927 0.36 -1.1
205,544 - MPMX19_03927 0.36 +0.2
205,813 + MPMX19_03927 0.66 -0.6
205,814 - MPMX19_03927 0.66 -0.6
205,814 - MPMX19_03927 0.66 -0.1
206,064 + +0.7
206,065 - -1.7
206,065 - -0.4
206,105 + -0.0
206,105 + -1.6
206,105 + -0.7
206,105 + -0.6
206,106 - +0.5
206,106 - -1.6
206,106 - -1.7
206,123 + -0.3
206,171 + +0.6
206,172 - -0.4
206,176 + +0.1
206,233 + -0.6
206,233 + +0.4
206,234 - -1.0
206,234 - +0.4
206,234 - +0.8
206,234 - -0.1
206,307 + -0.7
206,928 - MPMX19_03928 0.28 -1.3
206,939 + MPMX19_03928 0.29 +0.0
206,939 + MPMX19_03928 0.29 +0.7
206,939 + MPMX19_03928 0.29 -1.6
206,939 + MPMX19_03928 0.29 +0.4
206,939 + MPMX19_03928 0.29 -1.4
206,939 + MPMX19_03928 0.29 -0.9
206,939 + MPMX19_03928 0.29 -0.2
206,939 + MPMX19_03928 0.29 +0.2
206,940 - MPMX19_03928 0.29 -1.6
206,940 - MPMX19_03928 0.29 -1.1
206,940 - MPMX19_03928 0.29 -0.1
206,940 - MPMX19_03928 0.29 -1.0
206,940 - MPMX19_03928 0.29 -1.0
206,940 - MPMX19_03928 0.29 +1.0
206,940 - MPMX19_03928 0.29 +0.1
207,056 - MPMX19_03928 0.33 -0.8

Or see this region's nucleotide sequence