Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03924

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03921 and MPMX19_03922 are separated by 72 nucleotidesMPMX19_03922 and MPMX19_03923 overlap by 4 nucleotidesMPMX19_03923 and MPMX19_03924 are separated by 178 nucleotidesMPMX19_03924 and MPMX19_03925 are separated by 12 nucleotidesMPMX19_03925 and MPMX19_03926 are separated by 5 nucleotides MPMX19_03921: MPMX19_03921 - hypothetical protein, at 201,215 to 202,282 _03921 MPMX19_03922: MPMX19_03922 - Transcriptional activator HlyU, at 202,355 to 202,702 _03922 MPMX19_03923: MPMX19_03923 - hypothetical protein, at 202,699 to 202,902 _03923 MPMX19_03924: MPMX19_03924 - hypothetical protein, at 203,081 to 203,332 _03924 MPMX19_03925: MPMX19_03925 - L-methionine sulfoximine/L-methionine sulfone acetyltransferase, at 203,345 to 203,890 _03925 MPMX19_03926: MPMX19_03926 - hypothetical protein, at 203,896 to 205,149 _03926 Position (kb) 203 204Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 202.580 kb on + strand, within MPMX19_03922at 202.580 kb on + strand, within MPMX19_03922at 202.580 kb on + strand, within MPMX19_03922at 202.580 kb on + strand, within MPMX19_03922at 202.581 kb on - strand, within MPMX19_03922at 202.581 kb on - strand, within MPMX19_03922at 202.581 kb on - strand, within MPMX19_03922at 202.581 kb on - strand, within MPMX19_03922at 202.581 kb on - strand, within MPMX19_03922at 202.581 kb on - strand, within MPMX19_03922at 202.634 kb on + strand, within MPMX19_03922at 202.634 kb on + strand, within MPMX19_03922at 202.634 kb on + strand, within MPMX19_03922at 202.634 kb on + strand, within MPMX19_03922at 202.634 kb on + strand, within MPMX19_03922at 202.634 kb on + strand, within MPMX19_03922at 202.634 kb on + strand, within MPMX19_03922at 202.634 kb on + strand, within MPMX19_03922at 202.634 kb on + strand, within MPMX19_03922at 202.634 kb on + strand, within MPMX19_03922at 202.634 kb on + strand, within MPMX19_03922at 202.634 kb on + strand, within MPMX19_03922at 202.634 kb on + strand, within MPMX19_03922at 202.635 kb on - strand, within MPMX19_03922at 202.635 kb on - strand, within MPMX19_03922at 202.635 kb on - strand, within MPMX19_03922at 202.635 kb on - strand, within MPMX19_03922at 202.635 kb on - strand, within MPMX19_03922at 202.951 kb on + strandat 202.951 kb on + strandat 202.951 kb on + strandat 202.951 kb on + strandat 202.951 kb on + strandat 202.952 kb on - strandat 202.952 kb on - strandat 203.050 kb on + strandat 203.050 kb on + strandat 203.050 kb on + strandat 203.050 kb on + strandat 203.051 kb on - strandat 203.051 kb on - strandat 203.051 kb on - strandat 203.259 kb on + strand, within MPMX19_03924at 203.260 kb on - strand, within MPMX19_03924at 203.260 kb on - strand, within MPMX19_03924at 203.260 kb on - strand, within MPMX19_03924at 203.260 kb on - strand, within MPMX19_03924at 203.596 kb on + strand, within MPMX19_03925at 203.597 kb on - strand, within MPMX19_03925at 203.597 kb on - strand, within MPMX19_03925at 203.597 kb on - strand, within MPMX19_03925at 203.610 kb on + strand, within MPMX19_03925at 203.610 kb on + strand, within MPMX19_03925at 203.610 kb on + strand, within MPMX19_03925at 203.610 kb on + strand, within MPMX19_03925at 203.610 kb on + strand, within MPMX19_03925at 203.610 kb on + strand, within MPMX19_03925at 203.610 kb on + strand, within MPMX19_03925at 203.610 kb on + strand, within MPMX19_03925at 203.610 kb on + strand, within MPMX19_03925at 203.611 kb on - strand, within MPMX19_03925at 203.611 kb on - strand, within MPMX19_03925at 203.611 kb on - strand, within MPMX19_03925at 203.611 kb on - strand, within MPMX19_03925at 203.611 kb on - strand, within MPMX19_03925at 203.611 kb on - strand, within MPMX19_03925at 203.611 kb on - strand, within MPMX19_03925at 203.611 kb on - strand, within MPMX19_03925at 203.611 kb on - strand, within MPMX19_03925at 203.611 kb on - strand, within MPMX19_03925at 203.611 kb on - strand, within MPMX19_03925at 203.611 kb on - strand, within MPMX19_03925at 203.611 kb on - strand, within MPMX19_03925at 203.611 kb on - strand, within MPMX19_03925at 203.611 kb on - strand, within MPMX19_03925at 203.637 kb on + strand, within MPMX19_03925at 203.638 kb on - strand, within MPMX19_03925at 203.655 kb on + strand, within MPMX19_03925at 203.656 kb on - strand, within MPMX19_03925at 203.667 kb on + strand, within MPMX19_03925at 203.667 kb on + strand, within MPMX19_03925at 203.667 kb on + strand, within MPMX19_03925at 203.667 kb on + strand, within MPMX19_03925at 203.667 kb on + strand, within MPMX19_03925at 203.667 kb on + strand, within MPMX19_03925at 203.667 kb on + strand, within MPMX19_03925at 203.668 kb on - strand, within MPMX19_03925at 203.668 kb on - strand, within MPMX19_03925at 203.668 kb on - strand, within MPMX19_03925at 203.668 kb on - strand, within MPMX19_03925at 203.668 kb on - strand, within MPMX19_03925at 203.668 kb on - strand, within MPMX19_03925at 203.668 kb on - strand, within MPMX19_03925at 203.668 kb on - strand, within MPMX19_03925at 203.673 kb on + strand, within MPMX19_03925at 203.673 kb on + strand, within MPMX19_03925at 203.674 kb on - strand, within MPMX19_03925at 203.709 kb on + strand, within MPMX19_03925at 203.709 kb on + strand, within MPMX19_03925at 203.709 kb on + strand, within MPMX19_03925at 203.710 kb on - strand, within MPMX19_03925at 203.710 kb on - strand, within MPMX19_03925at 203.729 kb on + strand, within MPMX19_03925at 203.729 kb on + strand, within MPMX19_03925at 203.729 kb on + strand, within MPMX19_03925at 203.729 kb on + strand, within MPMX19_03925at 203.729 kb on + strand, within MPMX19_03925at 203.730 kb on - strand, within MPMX19_03925at 203.730 kb on - strand, within MPMX19_03925at 203.730 kb on - strand, within MPMX19_03925at 203.730 kb on - strand, within MPMX19_03925at 203.730 kb on - strand, within MPMX19_03925at 203.730 kb on - strand, within MPMX19_03925at 203.730 kb on - strand, within MPMX19_03925at 203.730 kb on - strand, within MPMX19_03925at 203.730 kb on - strand, within MPMX19_03925at 203.730 kb on - strand, within MPMX19_03925at 203.730 kb on - strand, within MPMX19_03925at 203.730 kb on - strand, within MPMX19_03925at 203.730 kb on - strand, within MPMX19_03925at 203.814 kb on + strand, within MPMX19_03925at 203.814 kb on + strand, within MPMX19_03925at 203.815 kb on - strand, within MPMX19_03925at 203.815 kb on - strand, within MPMX19_03925at 203.815 kb on - strand, within MPMX19_03925at 203.815 kb on - strand, within MPMX19_03925at 204.170 kb on + strand, within MPMX19_03926at 204.171 kb on - strand, within MPMX19_03926at 204.171 kb on - strand, within MPMX19_03926at 204.171 kb on - strand, within MPMX19_03926at 204.171 kb on - strand, within MPMX19_03926

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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202,580 + MPMX19_03922 0.65 +0.6
202,580 + MPMX19_03922 0.65 -0.6
202,580 + MPMX19_03922 0.65 +0.0
202,580 + MPMX19_03922 0.65 -0.1
202,581 - MPMX19_03922 0.65 -1.1
202,581 - MPMX19_03922 0.65 +0.3
202,581 - MPMX19_03922 0.65 +2.2
202,581 - MPMX19_03922 0.65 +1.0
202,581 - MPMX19_03922 0.65 -0.1
202,581 - MPMX19_03922 0.65 -1.1
202,634 + MPMX19_03922 0.80 -1.6
202,634 + MPMX19_03922 0.80 -0.4
202,634 + MPMX19_03922 0.80 -0.9
202,634 + MPMX19_03922 0.80 -0.6
202,634 + MPMX19_03922 0.80 -0.6
202,634 + MPMX19_03922 0.80 -1.7
202,634 + MPMX19_03922 0.80 +0.5
202,634 + MPMX19_03922 0.80 -0.8
202,634 + MPMX19_03922 0.80 -1.1
202,634 + MPMX19_03922 0.80 -0.5
202,634 + MPMX19_03922 0.80 -0.1
202,634 + MPMX19_03922 0.80 +0.4
202,634 + MPMX19_03922 0.80 -0.3
202,635 - MPMX19_03922 0.80 -2.2
202,635 - MPMX19_03922 0.80 -0.3
202,635 - MPMX19_03922 0.80 -0.6
202,635 - MPMX19_03922 0.80 +2.0
202,635 - MPMX19_03922 0.80 -0.9
202,951 + -2.3
202,951 + +0.5
202,951 + +0.7
202,951 + +1.7
202,951 + -0.0
202,952 - -0.6
202,952 - -0.2
203,050 + +1.5
203,050 + -0.3
203,050 + +0.1
203,050 + -0.9
203,051 - -0.4
203,051 - +0.2
203,051 - +0.0
203,259 + MPMX19_03924 0.71 +1.1
203,260 - MPMX19_03924 0.71 +0.1
203,260 - MPMX19_03924 0.71 -0.4
203,260 - MPMX19_03924 0.71 -0.0
203,260 - MPMX19_03924 0.71 -0.3
203,596 + MPMX19_03925 0.46 +1.0
203,597 - MPMX19_03925 0.46 -0.4
203,597 - MPMX19_03925 0.46 +0.1
203,597 - MPMX19_03925 0.46 -0.6
203,610 + MPMX19_03925 0.49 +0.7
203,610 + MPMX19_03925 0.49 -0.6
203,610 + MPMX19_03925 0.49 -0.6
203,610 + MPMX19_03925 0.49 -0.5
203,610 + MPMX19_03925 0.49 +1.1
203,610 + MPMX19_03925 0.49 +1.2
203,610 + MPMX19_03925 0.49 -0.3
203,610 + MPMX19_03925 0.49 -0.6
203,610 + MPMX19_03925 0.49 -2.2
203,611 - MPMX19_03925 0.49 -0.4
203,611 - MPMX19_03925 0.49 +0.1
203,611 - MPMX19_03925 0.49 +0.8
203,611 - MPMX19_03925 0.49 -0.1
203,611 - MPMX19_03925 0.49 +1.2
203,611 - MPMX19_03925 0.49 -0.9
203,611 - MPMX19_03925 0.49 -1.0
203,611 - MPMX19_03925 0.49 -0.7
203,611 - MPMX19_03925 0.49 +0.7
203,611 - MPMX19_03925 0.49 -0.4
203,611 - MPMX19_03925 0.49 +0.4
203,611 - MPMX19_03925 0.49 +0.1
203,611 - MPMX19_03925 0.49 -0.3
203,611 - MPMX19_03925 0.49 +2.0
203,611 - MPMX19_03925 0.49 -1.3
203,637 + MPMX19_03925 0.53 -0.4
203,638 - MPMX19_03925 0.54 -0.8
203,655 + MPMX19_03925 0.57 -0.7
203,656 - MPMX19_03925 0.57 -1.9
203,667 + MPMX19_03925 0.59 -1.0
203,667 + MPMX19_03925 0.59 -0.8
203,667 + MPMX19_03925 0.59 +1.1
203,667 + MPMX19_03925 0.59 -0.2
203,667 + MPMX19_03925 0.59 -0.4
203,667 + MPMX19_03925 0.59 -0.2
203,667 + MPMX19_03925 0.59 -0.5
203,668 - MPMX19_03925 0.59 -0.4
203,668 - MPMX19_03925 0.59 -0.5
203,668 - MPMX19_03925 0.59 -0.6
203,668 - MPMX19_03925 0.59 -0.6
203,668 - MPMX19_03925 0.59 -0.4
203,668 - MPMX19_03925 0.59 -0.2
203,668 - MPMX19_03925 0.59 +0.3
203,668 - MPMX19_03925 0.59 -0.5
203,673 + MPMX19_03925 0.60 +0.2
203,673 + MPMX19_03925 0.60 +0.0
203,674 - MPMX19_03925 0.60 -0.5
203,709 + MPMX19_03925 0.67 -1.4
203,709 + MPMX19_03925 0.67 +1.0
203,709 + MPMX19_03925 0.67 +0.1
203,710 - MPMX19_03925 0.67 +0.7
203,710 - MPMX19_03925 0.67 -0.3
203,729 + MPMX19_03925 0.70 -0.0
203,729 + MPMX19_03925 0.70 -0.5
203,729 + MPMX19_03925 0.70 -0.4
203,729 + MPMX19_03925 0.70 -1.9
203,729 + MPMX19_03925 0.70 +0.3
203,730 - MPMX19_03925 0.71 -2.2
203,730 - MPMX19_03925 0.71 -0.2
203,730 - MPMX19_03925 0.71 -3.0
203,730 - MPMX19_03925 0.71 -0.9
203,730 - MPMX19_03925 0.71 +1.6
203,730 - MPMX19_03925 0.71 +0.1
203,730 - MPMX19_03925 0.71 -2.1
203,730 - MPMX19_03925 0.71 +0.4
203,730 - MPMX19_03925 0.71 -0.3
203,730 - MPMX19_03925 0.71 -0.5
203,730 - MPMX19_03925 0.71 -0.7
203,730 - MPMX19_03925 0.71 -0.8
203,730 - MPMX19_03925 0.71 +0.7
203,814 + MPMX19_03925 0.86 +0.4
203,814 + MPMX19_03925 0.86 -0.4
203,815 - MPMX19_03925 0.86 -1.7
203,815 - MPMX19_03925 0.86 -0.7
203,815 - MPMX19_03925 0.86 -0.4
203,815 - MPMX19_03925 0.86 +0.0
204,170 + MPMX19_03926 0.22 -1.1
204,171 - MPMX19_03926 0.22 -0.0
204,171 - MPMX19_03926 0.22 -0.8
204,171 - MPMX19_03926 0.22 -0.8
204,171 - MPMX19_03926 0.22 -0.3

Or see this region's nucleotide sequence