Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03912

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03911 and MPMX19_03912 are separated by 111 nucleotidesMPMX19_03912 and MPMX19_03913 overlap by 4 nucleotides MPMX19_03911: MPMX19_03911 - Crotonobetaine/carnitine--CoA ligase, at 188,692 to 190,230 _03911 MPMX19_03912: MPMX19_03912 - 6-deoxy-6-sulfogluconolactonase, at 190,342 to 191,256 _03912 MPMX19_03913: MPMX19_03913 - hypothetical protein, at 191,253 to 192,770 _03913 Position (kb) 190 191 192Strain fitness (log2 ratio) -2 -1 0 1 2at 189.433 kb on + strand, within MPMX19_03911at 189.433 kb on + strand, within MPMX19_03911at 189.433 kb on + strand, within MPMX19_03911at 189.454 kb on + strand, within MPMX19_03911at 189.454 kb on + strand, within MPMX19_03911at 189.454 kb on + strand, within MPMX19_03911at 189.455 kb on - strand, within MPMX19_03911at 189.455 kb on - strand, within MPMX19_03911at 189.604 kb on + strand, within MPMX19_03911at 189.604 kb on + strand, within MPMX19_03911at 189.604 kb on + strand, within MPMX19_03911at 189.604 kb on + strand, within MPMX19_03911at 189.604 kb on + strand, within MPMX19_03911at 189.605 kb on - strand, within MPMX19_03911at 189.605 kb on - strand, within MPMX19_03911at 189.605 kb on - strand, within MPMX19_03911at 189.651 kb on + strand, within MPMX19_03911at 189.762 kb on + strand, within MPMX19_03911at 189.788 kb on - strand, within MPMX19_03911at 189.788 kb on - strand, within MPMX19_03911at 189.788 kb on - strand, within MPMX19_03911at 189.788 kb on - strand, within MPMX19_03911at 189.788 kb on - strand, within MPMX19_03911at 190.123 kb on + strandat 190.123 kb on + strandat 190.123 kb on + strandat 190.123 kb on + strandat 190.123 kb on + strandat 190.123 kb on + strandat 190.123 kb on + strandat 190.123 kb on + strandat 190.123 kb on + strandat 190.124 kb on - strandat 190.124 kb on - strandat 190.124 kb on - strandat 190.124 kb on - strandat 190.124 kb on - strandat 190.124 kb on - strandat 190.124 kb on - strandat 190.228 kb on + strandat 190.281 kb on + strandat 190.281 kb on + strandat 190.281 kb on + strandat 190.281 kb on + strandat 190.281 kb on + strandat 190.281 kb on + strandat 190.281 kb on + strandat 190.281 kb on + strandat 190.281 kb on + strandat 190.282 kb on - strandat 190.282 kb on - strandat 190.282 kb on - strandat 190.282 kb on - strandat 190.282 kb on - strandat 190.282 kb on - strandat 190.282 kb on - strandat 190.589 kb on + strand, within MPMX19_03912at 190.589 kb on + strand, within MPMX19_03912at 190.590 kb on - strand, within MPMX19_03912at 190.590 kb on - strand, within MPMX19_03912at 190.590 kb on - strand, within MPMX19_03912at 190.590 kb on - strand, within MPMX19_03912at 190.590 kb on - strand, within MPMX19_03912at 190.691 kb on + strand, within MPMX19_03912at 190.691 kb on + strand, within MPMX19_03912at 190.692 kb on - strand, within MPMX19_03912at 190.740 kb on - strand, within MPMX19_03912at 190.829 kb on + strand, within MPMX19_03912at 190.829 kb on + strand, within MPMX19_03912at 190.829 kb on + strand, within MPMX19_03912at 190.829 kb on + strand, within MPMX19_03912at 190.830 kb on - strand, within MPMX19_03912at 190.830 kb on - strand, within MPMX19_03912at 190.830 kb on - strand, within MPMX19_03912at 190.836 kb on - strand, within MPMX19_03912at 191.283 kb on + strandat 191.377 kb on + strandat 191.377 kb on + strandat 191.377 kb on + strandat 191.377 kb on + strandat 191.377 kb on + strandat 191.378 kb on - strandat 191.378 kb on - strandat 191.389 kb on + strandat 191.389 kb on + strandat 191.389 kb on + strandat 191.389 kb on + strandat 191.389 kb on + strandat 191.390 kb on - strandat 191.390 kb on - strandat 191.390 kb on - strandat 191.390 kb on - strandat 191.390 kb on - strandat 191.390 kb on - strandat 191.390 kb on - strandat 191.390 kb on - strandat 191.390 kb on - strandat 191.500 kb on + strand, within MPMX19_03913at 191.500 kb on + strand, within MPMX19_03913at 191.500 kb on + strand, within MPMX19_03913at 191.500 kb on + strand, within MPMX19_03913at 191.501 kb on - strand, within MPMX19_03913at 191.501 kb on - strand, within MPMX19_03913at 191.560 kb on + strand, within MPMX19_03913at 191.560 kb on + strand, within MPMX19_03913at 191.560 kb on + strand, within MPMX19_03913at 191.560 kb on + strand, within MPMX19_03913at 191.561 kb on - strand, within MPMX19_03913at 191.561 kb on - strand, within MPMX19_03913at 191.561 kb on - strand, within MPMX19_03913at 191.561 kb on - strand, within MPMX19_03913at 191.561 kb on - strand, within MPMX19_03913at 191.561 kb on - strand, within MPMX19_03913at 191.561 kb on - strand, within MPMX19_03913at 191.561 kb on - strand, within MPMX19_03913at 191.674 kb on + strand, within MPMX19_03913at 191.674 kb on + strand, within MPMX19_03913at 191.674 kb on + strand, within MPMX19_03913at 191.674 kb on + strand, within MPMX19_03913at 191.674 kb on + strand, within MPMX19_03913at 191.674 kb on + strand, within MPMX19_03913at 191.674 kb on + strand, within MPMX19_03913at 191.674 kb on + strand, within MPMX19_03913at 191.675 kb on - strand, within MPMX19_03913at 191.675 kb on - strand, within MPMX19_03913at 191.675 kb on - strand, within MPMX19_03913at 191.675 kb on - strand, within MPMX19_03913at 191.675 kb on - strand, within MPMX19_03913at 191.675 kb on - strand, within MPMX19_03913at 191.675 kb on - strand, within MPMX19_03913at 191.675 kb on - strand, within MPMX19_03913at 191.896 kb on + strand, within MPMX19_03913at 191.896 kb on + strand, within MPMX19_03913at 191.896 kb on + strand, within MPMX19_03913at 191.897 kb on - strand, within MPMX19_03913at 191.935 kb on + strand, within MPMX19_03913at 191.935 kb on + strand, within MPMX19_03913at 191.936 kb on - strand, within MPMX19_03913at 191.936 kb on - strand, within MPMX19_03913at 191.936 kb on - strand, within MPMX19_03913at 191.944 kb on + strand, within MPMX19_03913at 191.944 kb on + strand, within MPMX19_03913at 191.945 kb on - strand, within MPMX19_03913at 191.945 kb on - strand, within MPMX19_03913at 191.945 kb on - strand, within MPMX19_03913at 192.034 kb on + strand, within MPMX19_03913at 192.034 kb on + strand, within MPMX19_03913at 192.034 kb on + strand, within MPMX19_03913at 192.034 kb on + strand, within MPMX19_03913at 192.034 kb on + strand, within MPMX19_03913at 192.034 kb on + strand, within MPMX19_03913at 192.034 kb on + strand, within MPMX19_03913at 192.034 kb on + strand, within MPMX19_03913at 192.034 kb on + strand, within MPMX19_03913at 192.035 kb on - strand, within MPMX19_03913at 192.035 kb on - strand, within MPMX19_03913at 192.035 kb on - strand, within MPMX19_03913at 192.035 kb on - strand, within MPMX19_03913at 192.035 kb on - strand, within MPMX19_03913at 192.035 kb on - strand, within MPMX19_03913at 192.035 kb on - strand, within MPMX19_03913at 192.035 kb on - strand, within MPMX19_03913at 192.035 kb on - strand, within MPMX19_03913at 192.035 kb on - strand, within MPMX19_03913at 192.035 kb on - strand, within MPMX19_03913at 192.035 kb on - strand, within MPMX19_03913at 192.035 kb on - strand, within MPMX19_03913at 192.178 kb on + strand, within MPMX19_03913at 192.178 kb on + strand, within MPMX19_03913

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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189,433 + MPMX19_03911 0.48 +0.3
189,433 + MPMX19_03911 0.48 +1.2
189,433 + MPMX19_03911 0.48 -2.5
189,454 + MPMX19_03911 0.50 -0.4
189,454 + MPMX19_03911 0.50 -0.3
189,454 + MPMX19_03911 0.50 +0.2
189,455 - MPMX19_03911 0.50 +0.3
189,455 - MPMX19_03911 0.50 -0.3
189,604 + MPMX19_03911 0.59 -1.1
189,604 + MPMX19_03911 0.59 -0.8
189,604 + MPMX19_03911 0.59 -0.2
189,604 + MPMX19_03911 0.59 +0.2
189,604 + MPMX19_03911 0.59 +0.2
189,605 - MPMX19_03911 0.59 +0.2
189,605 - MPMX19_03911 0.59 +0.2
189,605 - MPMX19_03911 0.59 +0.2
189,651 + MPMX19_03911 0.62 +0.5
189,762 + MPMX19_03911 0.70 -0.6
189,788 - MPMX19_03911 0.71 -0.6
189,788 - MPMX19_03911 0.71 -0.4
189,788 - MPMX19_03911 0.71 -2.2
189,788 - MPMX19_03911 0.71 -0.4
189,788 - MPMX19_03911 0.71 -1.6
190,123 + -0.4
190,123 + +0.6
190,123 + +0.6
190,123 + -0.3
190,123 + +1.3
190,123 + -2.7
190,123 + +0.2
190,123 + -0.8
190,123 + -0.7
190,124 - -0.2
190,124 - +0.0
190,124 - -0.8
190,124 - -0.1
190,124 - +0.2
190,124 - -0.8
190,124 - -1.8
190,228 + -0.0
190,281 + -1.4
190,281 + +0.2
190,281 + +0.1
190,281 + +0.1
190,281 + +0.2
190,281 + -2.3
190,281 + -0.5
190,281 + -0.8
190,281 + +0.2
190,282 - -0.4
190,282 - +1.3
190,282 - +0.9
190,282 - -0.1
190,282 - -0.3
190,282 - -0.3
190,282 - -0.3
190,589 + MPMX19_03912 0.27 +0.0
190,589 + MPMX19_03912 0.27 +0.6
190,590 - MPMX19_03912 0.27 -0.1
190,590 - MPMX19_03912 0.27 -1.5
190,590 - MPMX19_03912 0.27 -1.4
190,590 - MPMX19_03912 0.27 -0.9
190,590 - MPMX19_03912 0.27 -1.8
190,691 + MPMX19_03912 0.38 -0.1
190,691 + MPMX19_03912 0.38 -2.1
190,692 - MPMX19_03912 0.38 -0.9
190,740 - MPMX19_03912 0.43 +0.5
190,829 + MPMX19_03912 0.53 +1.3
190,829 + MPMX19_03912 0.53 -2.3
190,829 + MPMX19_03912 0.53 -2.2
190,829 + MPMX19_03912 0.53 +0.1
190,830 - MPMX19_03912 0.53 -0.5
190,830 - MPMX19_03912 0.53 -1.5
190,830 - MPMX19_03912 0.53 -0.3
190,836 - MPMX19_03912 0.54 -0.5
191,283 + -0.1
191,377 + +0.7
191,377 + -0.4
191,377 + +0.0
191,377 + +0.7
191,377 + -1.2
191,378 - +0.2
191,378 - +1.7
191,389 + -0.7
191,389 + +0.3
191,389 + -1.1
191,389 + -0.1
191,389 + -0.4
191,390 - +1.2
191,390 - -1.6
191,390 - +0.0
191,390 - -0.7
191,390 - +0.1
191,390 - -1.7
191,390 - -0.7
191,390 - -1.1
191,390 - +0.6
191,500 + MPMX19_03913 0.16 -1.7
191,500 + MPMX19_03913 0.16 +0.2
191,500 + MPMX19_03913 0.16 -0.0
191,500 + MPMX19_03913 0.16 +0.7
191,501 - MPMX19_03913 0.16 +0.2
191,501 - MPMX19_03913 0.16 -0.3
191,560 + MPMX19_03913 0.20 -0.3
191,560 + MPMX19_03913 0.20 -2.0
191,560 + MPMX19_03913 0.20 -1.1
191,560 + MPMX19_03913 0.20 -0.1
191,561 - MPMX19_03913 0.20 -0.1
191,561 - MPMX19_03913 0.20 -0.3
191,561 - MPMX19_03913 0.20 -0.1
191,561 - MPMX19_03913 0.20 -0.7
191,561 - MPMX19_03913 0.20 -0.3
191,561 - MPMX19_03913 0.20 -1.6
191,561 - MPMX19_03913 0.20 -1.4
191,561 - MPMX19_03913 0.20 -0.6
191,674 + MPMX19_03913 0.28 +0.9
191,674 + MPMX19_03913 0.28 -1.8
191,674 + MPMX19_03913 0.28 -1.8
191,674 + MPMX19_03913 0.28 -1.1
191,674 + MPMX19_03913 0.28 +0.7
191,674 + MPMX19_03913 0.28 -1.7
191,674 + MPMX19_03913 0.28 -0.8
191,674 + MPMX19_03913 0.28 -0.4
191,675 - MPMX19_03913 0.28 -0.1
191,675 - MPMX19_03913 0.28 +0.2
191,675 - MPMX19_03913 0.28 -0.3
191,675 - MPMX19_03913 0.28 -0.5
191,675 - MPMX19_03913 0.28 -0.1
191,675 - MPMX19_03913 0.28 +0.1
191,675 - MPMX19_03913 0.28 -0.8
191,675 - MPMX19_03913 0.28 +1.3
191,896 + MPMX19_03913 0.42 -2.1
191,896 + MPMX19_03913 0.42 -0.8
191,896 + MPMX19_03913 0.42 -0.8
191,897 - MPMX19_03913 0.42 -1.2
191,935 + MPMX19_03913 0.45 -2.0
191,935 + MPMX19_03913 0.45 -0.7
191,936 - MPMX19_03913 0.45 -1.0
191,936 - MPMX19_03913 0.45 +0.5
191,936 - MPMX19_03913 0.45 +0.1
191,944 + MPMX19_03913 0.46 -2.1
191,944 + MPMX19_03913 0.46 +0.0
191,945 - MPMX19_03913 0.46 -0.4
191,945 - MPMX19_03913 0.46 -0.3
191,945 - MPMX19_03913 0.46 -2.0
192,034 + MPMX19_03913 0.51 +1.3
192,034 + MPMX19_03913 0.51 +0.0
192,034 + MPMX19_03913 0.51 +0.1
192,034 + MPMX19_03913 0.51 +0.3
192,034 + MPMX19_03913 0.51 +0.4
192,034 + MPMX19_03913 0.51 +1.2
192,034 + MPMX19_03913 0.51 -1.7
192,034 + MPMX19_03913 0.51 -0.2
192,034 + MPMX19_03913 0.51 -1.3
192,035 - MPMX19_03913 0.52 +0.0
192,035 - MPMX19_03913 0.52 -1.3
192,035 - MPMX19_03913 0.52 -1.3
192,035 - MPMX19_03913 0.52 +0.7
192,035 - MPMX19_03913 0.52 -0.3
192,035 - MPMX19_03913 0.52 -0.8
192,035 - MPMX19_03913 0.52 +0.0
192,035 - MPMX19_03913 0.52 -1.2
192,035 - MPMX19_03913 0.52 -0.6
192,035 - MPMX19_03913 0.52 -0.4
192,035 - MPMX19_03913 0.52 -0.8
192,035 - MPMX19_03913 0.52 +2.5
192,035 - MPMX19_03913 0.52 +1.0
192,178 + MPMX19_03913 0.61 -0.0
192,178 + MPMX19_03913 0.61 -0.4

Or see this region's nucleotide sequence