Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03837

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03835 and MPMX19_03836 are separated by 131 nucleotidesMPMX19_03836 and MPMX19_03837 are separated by 109 nucleotidesMPMX19_03837 and MPMX19_03838 are separated by 12 nucleotides MPMX19_03835: MPMX19_03835 - Lipoprotein E, at 73,418 to 74,299 _03835 MPMX19_03836: MPMX19_03836 - Disulfide-bond oxidoreductase YfcG, at 74,431 to 75,063 _03836 MPMX19_03837: MPMX19_03837 - HTH-type transcriptional regulator PgrR, at 75,173 to 76,072 _03837 MPMX19_03838: MPMX19_03838 - Hercynine oxygenase, at 76,085 to 77,080 _03838 Position (kb) 75 76 77Strain fitness (log2 ratio) -2 -1 0 1 2at 74.414 kb on + strandat 74.415 kb on - strandat 74.535 kb on + strand, within MPMX19_03836at 74.536 kb on - strand, within MPMX19_03836at 74.561 kb on + strand, within MPMX19_03836at 74.561 kb on + strand, within MPMX19_03836at 74.561 kb on + strand, within MPMX19_03836at 74.561 kb on + strand, within MPMX19_03836at 74.561 kb on + strand, within MPMX19_03836at 74.561 kb on + strand, within MPMX19_03836at 74.561 kb on + strand, within MPMX19_03836at 74.561 kb on + strand, within MPMX19_03836at 74.561 kb on + strand, within MPMX19_03836at 74.561 kb on + strand, within MPMX19_03836at 74.561 kb on + strand, within MPMX19_03836at 74.561 kb on + strand, within MPMX19_03836at 74.561 kb on + strand, within MPMX19_03836at 74.561 kb on + strand, within MPMX19_03836at 74.562 kb on - strand, within MPMX19_03836at 74.562 kb on - strand, within MPMX19_03836at 74.562 kb on - strand, within MPMX19_03836at 74.562 kb on - strand, within MPMX19_03836at 74.562 kb on - strand, within MPMX19_03836at 74.567 kb on + strand, within MPMX19_03836at 74.567 kb on + strand, within MPMX19_03836at 74.567 kb on + strand, within MPMX19_03836at 74.567 kb on + strand, within MPMX19_03836at 74.567 kb on + strand, within MPMX19_03836at 74.567 kb on + strand, within MPMX19_03836at 74.568 kb on - strand, within MPMX19_03836at 74.568 kb on - strand, within MPMX19_03836at 74.568 kb on - strand, within MPMX19_03836at 74.568 kb on - strand, within MPMX19_03836at 74.568 kb on - strand, within MPMX19_03836at 74.568 kb on - strand, within MPMX19_03836at 74.568 kb on - strand, within MPMX19_03836at 74.568 kb on - strand, within MPMX19_03836at 74.820 kb on - strand, within MPMX19_03836at 74.820 kb on - strand, within MPMX19_03836at 74.834 kb on + strand, within MPMX19_03836at 74.834 kb on + strand, within MPMX19_03836at 74.835 kb on - strand, within MPMX19_03836at 74.835 kb on - strand, within MPMX19_03836at 74.835 kb on - strand, within MPMX19_03836at 74.957 kb on + strand, within MPMX19_03836at 74.957 kb on + strand, within MPMX19_03836at 74.957 kb on + strand, within MPMX19_03836at 74.957 kb on + strand, within MPMX19_03836at 74.957 kb on + strand, within MPMX19_03836at 74.957 kb on + strand, within MPMX19_03836at 74.957 kb on + strand, within MPMX19_03836at 74.957 kb on + strand, within MPMX19_03836at 74.957 kb on + strand, within MPMX19_03836at 74.957 kb on + strand, within MPMX19_03836at 74.958 kb on - strand, within MPMX19_03836at 74.958 kb on - strand, within MPMX19_03836at 74.958 kb on - strand, within MPMX19_03836at 74.958 kb on - strand, within MPMX19_03836at 74.958 kb on - strand, within MPMX19_03836at 74.958 kb on - strand, within MPMX19_03836at 74.958 kb on - strand, within MPMX19_03836at 74.958 kb on - strand, within MPMX19_03836at 74.963 kb on + strand, within MPMX19_03836at 74.964 kb on - strand, within MPMX19_03836at 75.029 kb on + strandat 75.029 kb on + strandat 75.029 kb on + strandat 75.029 kb on + strandat 75.029 kb on + strandat 75.030 kb on - strandat 75.030 kb on - strandat 75.030 kb on - strandat 75.030 kb on - strandat 75.130 kb on + strandat 75.130 kb on + strandat 75.131 kb on - strandat 75.131 kb on - strandat 75.173 kb on - strandat 75.173 kb on - strandat 75.398 kb on + strand, within MPMX19_03837at 75.398 kb on + strand, within MPMX19_03837at 75.398 kb on + strand, within MPMX19_03837at 75.399 kb on - strand, within MPMX19_03837at 75.680 kb on + strand, within MPMX19_03837at 75.681 kb on - strand, within MPMX19_03837at 75.681 kb on - strand, within MPMX19_03837at 75.893 kb on + strand, within MPMX19_03837at 75.893 kb on + strand, within MPMX19_03837at 75.893 kb on + strand, within MPMX19_03837at 75.893 kb on + strand, within MPMX19_03837at 75.893 kb on + strand, within MPMX19_03837at 75.893 kb on + strand, within MPMX19_03837at 75.894 kb on - strand, within MPMX19_03837at 75.894 kb on - strand, within MPMX19_03837at 75.894 kb on - strand, within MPMX19_03837at 75.894 kb on - strand, within MPMX19_03837at 75.894 kb on - strand, within MPMX19_03837at 76.113 kb on + strandat 76.113 kb on + strandat 76.113 kb on + strandat 76.122 kb on + strandat 76.122 kb on + strandat 76.122 kb on + strandat 76.122 kb on + strandat 76.123 kb on - strandat 76.167 kb on + strandat 76.167 kb on + strandat 76.167 kb on + strandat 76.167 kb on + strandat 76.167 kb on + strandat 76.167 kb on + strandat 76.167 kb on + strandat 76.167 kb on + strandat 76.167 kb on + strandat 76.167 kb on + strandat 76.167 kb on + strandat 76.167 kb on + strandat 76.168 kb on - strandat 76.168 kb on - strandat 76.168 kb on - strandat 76.168 kb on - strandat 76.284 kb on + strand, within MPMX19_03838at 76.284 kb on + strand, within MPMX19_03838at 76.284 kb on + strand, within MPMX19_03838at 76.284 kb on + strand, within MPMX19_03838at 76.284 kb on + strand, within MPMX19_03838at 76.285 kb on - strand, within MPMX19_03838at 76.285 kb on - strand, within MPMX19_03838at 76.285 kb on - strand, within MPMX19_03838at 76.308 kb on + strand, within MPMX19_03838at 76.309 kb on - strand, within MPMX19_03838at 76.473 kb on + strand, within MPMX19_03838at 76.473 kb on + strand, within MPMX19_03838at 76.473 kb on + strand, within MPMX19_03838at 76.473 kb on + strand, within MPMX19_03838at 76.473 kb on + strand, within MPMX19_03838at 76.473 kb on + strand, within MPMX19_03838at 76.474 kb on - strand, within MPMX19_03838at 76.474 kb on - strand, within MPMX19_03838at 76.503 kb on + strand, within MPMX19_03838at 76.503 kb on + strand, within MPMX19_03838at 76.539 kb on + strand, within MPMX19_03838at 76.539 kb on + strand, within MPMX19_03838at 76.539 kb on + strand, within MPMX19_03838at 76.539 kb on + strand, within MPMX19_03838at 76.539 kb on + strand, within MPMX19_03838at 76.539 kb on + strand, within MPMX19_03838at 76.539 kb on + strand, within MPMX19_03838at 76.539 kb on + strand, within MPMX19_03838at 76.539 kb on + strand, within MPMX19_03838at 76.539 kb on + strand, within MPMX19_03838at 76.539 kb on + strand, within MPMX19_03838at 76.539 kb on + strand, within MPMX19_03838at 76.539 kb on + strand, within MPMX19_03838at 76.539 kb on + strand, within MPMX19_03838at 76.539 kb on + strand, within MPMX19_03838at 76.539 kb on + strand, within MPMX19_03838at 76.539 kb on + strand, within MPMX19_03838at 76.539 kb on + strand, within MPMX19_03838at 76.539 kb on + strand, within MPMX19_03838at 76.539 kb on + strand, within MPMX19_03838at 76.539 kb on + strand, within MPMX19_03838at 76.539 kb on + strand, within MPMX19_03838at 76.539 kb on + strand, within MPMX19_03838at 76.539 kb on + strand, within MPMX19_03838at 76.539 kb on + strand, within MPMX19_03838at 76.539 kb on + strand, within MPMX19_03838at 76.539 kb on + strand, within MPMX19_03838at 76.540 kb on - strand, within MPMX19_03838at 76.540 kb on - strand, within MPMX19_03838at 76.540 kb on - strand, within MPMX19_03838at 76.540 kb on - strand, within MPMX19_03838at 76.540 kb on - strand, within MPMX19_03838at 76.540 kb on - strand, within MPMX19_03838at 76.540 kb on - strand, within MPMX19_03838at 76.540 kb on - strand, within MPMX19_03838at 76.540 kb on - strand, within MPMX19_03838at 76.540 kb on - strand, within MPMX19_03838at 76.540 kb on - strand, within MPMX19_03838at 76.540 kb on - strand, within MPMX19_03838at 76.540 kb on - strand, within MPMX19_03838at 76.540 kb on - strand, within MPMX19_03838at 76.554 kb on + strand, within MPMX19_03838at 76.555 kb on - strand, within MPMX19_03838at 76.654 kb on - strand, within MPMX19_03838at 76.654 kb on - strand, within MPMX19_03838at 76.707 kb on + strand, within MPMX19_03838at 76.707 kb on + strand, within MPMX19_03838at 76.707 kb on + strand, within MPMX19_03838at 76.707 kb on + strand, within MPMX19_03838at 76.707 kb on + strand, within MPMX19_03838at 76.707 kb on + strand, within MPMX19_03838at 76.707 kb on + strand, within MPMX19_03838at 76.708 kb on - strand, within MPMX19_03838at 76.708 kb on - strand, within MPMX19_03838at 76.708 kb on - strand, within MPMX19_03838at 76.708 kb on - strand, within MPMX19_03838at 76.728 kb on + strand, within MPMX19_03838at 76.728 kb on + strand, within MPMX19_03838at 76.728 kb on + strand, within MPMX19_03838at 76.729 kb on - strand, within MPMX19_03838at 76.824 kb on + strand, within MPMX19_03838at 76.824 kb on + strand, within MPMX19_03838at 76.824 kb on + strand, within MPMX19_03838at 76.824 kb on + strand, within MPMX19_03838at 76.824 kb on + strand, within MPMX19_03838at 76.824 kb on + strand, within MPMX19_03838at 76.824 kb on + strand, within MPMX19_03838at 76.824 kb on + strand, within MPMX19_03838at 76.824 kb on + strand, within MPMX19_03838at 76.825 kb on - strand, within MPMX19_03838at 76.825 kb on - strand, within MPMX19_03838at 76.825 kb on - strand, within MPMX19_03838at 76.825 kb on - strand, within MPMX19_03838at 76.825 kb on - strand, within MPMX19_03838at 76.825 kb on - strand, within MPMX19_03838

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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74,414 + -0.3
74,415 - +0.3
74,535 + MPMX19_03836 0.16 -0.4
74,536 - MPMX19_03836 0.17 +0.2
74,561 + MPMX19_03836 0.21 -0.0
74,561 + MPMX19_03836 0.21 -1.0
74,561 + MPMX19_03836 0.21 -1.3
74,561 + MPMX19_03836 0.21 -1.1
74,561 + MPMX19_03836 0.21 -0.8
74,561 + MPMX19_03836 0.21 -0.0
74,561 + MPMX19_03836 0.21 -0.2
74,561 + MPMX19_03836 0.21 +0.3
74,561 + MPMX19_03836 0.21 -0.4
74,561 + MPMX19_03836 0.21 +0.4
74,561 + MPMX19_03836 0.21 -2.4
74,561 + MPMX19_03836 0.21 -0.3
74,561 + MPMX19_03836 0.21 -1.8
74,561 + MPMX19_03836 0.21 -1.4
74,562 - MPMX19_03836 0.21 -1.6
74,562 - MPMX19_03836 0.21 +0.3
74,562 - MPMX19_03836 0.21 -0.2
74,562 - MPMX19_03836 0.21 -1.0
74,562 - MPMX19_03836 0.21 +0.9
74,567 + MPMX19_03836 0.21 +0.2
74,567 + MPMX19_03836 0.21 -1.0
74,567 + MPMX19_03836 0.21 +0.1
74,567 + MPMX19_03836 0.21 -1.0
74,567 + MPMX19_03836 0.21 -1.5
74,567 + MPMX19_03836 0.21 +0.2
74,568 - MPMX19_03836 0.22 -0.8
74,568 - MPMX19_03836 0.22 +0.1
74,568 - MPMX19_03836 0.22 -0.1
74,568 - MPMX19_03836 0.22 +0.7
74,568 - MPMX19_03836 0.22 -0.1
74,568 - MPMX19_03836 0.22 -0.3
74,568 - MPMX19_03836 0.22 +0.5
74,568 - MPMX19_03836 0.22 -0.7
74,820 - MPMX19_03836 0.61 +0.7
74,820 - MPMX19_03836 0.61 -1.6
74,834 + MPMX19_03836 0.64 -0.8
74,834 + MPMX19_03836 0.64 -1.4
74,835 - MPMX19_03836 0.64 +1.9
74,835 - MPMX19_03836 0.64 -2.2
74,835 - MPMX19_03836 0.64 -0.1
74,957 + MPMX19_03836 0.83 -0.4
74,957 + MPMX19_03836 0.83 -1.1
74,957 + MPMX19_03836 0.83 +1.1
74,957 + MPMX19_03836 0.83 -0.4
74,957 + MPMX19_03836 0.83 -1.1
74,957 + MPMX19_03836 0.83 +0.3
74,957 + MPMX19_03836 0.83 -2.7
74,957 + MPMX19_03836 0.83 +0.4
74,957 + MPMX19_03836 0.83 -1.1
74,957 + MPMX19_03836 0.83 -0.2
74,958 - MPMX19_03836 0.83 -1.7
74,958 - MPMX19_03836 0.83 -1.0
74,958 - MPMX19_03836 0.83 -0.1
74,958 - MPMX19_03836 0.83 -1.0
74,958 - MPMX19_03836 0.83 -1.1
74,958 - MPMX19_03836 0.83 +0.4
74,958 - MPMX19_03836 0.83 -0.8
74,958 - MPMX19_03836 0.83 -0.2
74,963 + MPMX19_03836 0.84 -1.4
74,964 - MPMX19_03836 0.84 -0.4
75,029 + -1.6
75,029 + -0.4
75,029 + -0.6
75,029 + -0.4
75,029 + -1.4
75,030 - -1.3
75,030 - +0.7
75,030 - -0.0
75,030 - +1.3
75,130 + -1.6
75,130 + -0.7
75,131 - -0.0
75,131 - -0.3
75,173 - -0.2
75,173 - -0.4
75,398 + MPMX19_03837 0.25 -2.2
75,398 + MPMX19_03837 0.25 -1.4
75,398 + MPMX19_03837 0.25 +0.3
75,399 - MPMX19_03837 0.25 +0.6
75,680 + MPMX19_03837 0.56 -0.3
75,681 - MPMX19_03837 0.56 +1.3
75,681 - MPMX19_03837 0.56 -2.3
75,893 + MPMX19_03837 0.80 -0.4
75,893 + MPMX19_03837 0.80 -1.1
75,893 + MPMX19_03837 0.80 -0.2
75,893 + MPMX19_03837 0.80 -1.8
75,893 + MPMX19_03837 0.80 -1.1
75,893 + MPMX19_03837 0.80 -1.4
75,894 - MPMX19_03837 0.80 -0.2
75,894 - MPMX19_03837 0.80 +0.6
75,894 - MPMX19_03837 0.80 -0.4
75,894 - MPMX19_03837 0.80 -0.2
75,894 - MPMX19_03837 0.80 -0.5
76,113 + -1.3
76,113 + +0.2
76,113 + -0.0
76,122 + +0.3
76,122 + +0.2
76,122 + -1.1
76,122 + +1.2
76,123 - -1.2
76,167 + -0.4
76,167 + -1.3
76,167 + +0.2
76,167 + +0.7
76,167 + -1.3
76,167 + -0.3
76,167 + -0.5
76,167 + -1.4
76,167 + -0.6
76,167 + +0.3
76,167 + -1.1
76,167 + -0.5
76,168 - -0.2
76,168 - -0.3
76,168 - +0.7
76,168 - -0.1
76,284 + MPMX19_03838 0.20 +0.6
76,284 + MPMX19_03838 0.20 -0.1
76,284 + MPMX19_03838 0.20 -0.8
76,284 + MPMX19_03838 0.20 -1.1
76,284 + MPMX19_03838 0.20 -0.8
76,285 - MPMX19_03838 0.20 -0.2
76,285 - MPMX19_03838 0.20 +0.2
76,285 - MPMX19_03838 0.20 -0.7
76,308 + MPMX19_03838 0.22 +2.1
76,309 - MPMX19_03838 0.22 -0.6
76,473 + MPMX19_03838 0.39 -1.1
76,473 + MPMX19_03838 0.39 -1.6
76,473 + MPMX19_03838 0.39 -0.6
76,473 + MPMX19_03838 0.39 +1.9
76,473 + MPMX19_03838 0.39 -1.4
76,473 + MPMX19_03838 0.39 +0.7
76,474 - MPMX19_03838 0.39 -0.6
76,474 - MPMX19_03838 0.39 +0.1
76,503 + MPMX19_03838 0.42 -1.6
76,503 + MPMX19_03838 0.42 -0.2
76,539 + MPMX19_03838 0.46 -0.6
76,539 + MPMX19_03838 0.46 -0.2
76,539 + MPMX19_03838 0.46 -0.5
76,539 + MPMX19_03838 0.46 -0.4
76,539 + MPMX19_03838 0.46 +0.1
76,539 + MPMX19_03838 0.46 -1.6
76,539 + MPMX19_03838 0.46 +0.3
76,539 + MPMX19_03838 0.46 -0.9
76,539 + MPMX19_03838 0.46 -0.7
76,539 + MPMX19_03838 0.46 -1.1
76,539 + MPMX19_03838 0.46 +0.3
76,539 + MPMX19_03838 0.46 +1.1
76,539 + MPMX19_03838 0.46 -0.1
76,539 + MPMX19_03838 0.46 -1.4
76,539 + MPMX19_03838 0.46 -0.3
76,539 + MPMX19_03838 0.46 -0.1
76,539 + MPMX19_03838 0.46 +0.2
76,539 + MPMX19_03838 0.46 -1.3
76,539 + MPMX19_03838 0.46 -1.6
76,539 + MPMX19_03838 0.46 -0.2
76,539 + MPMX19_03838 0.46 -0.4
76,539 + MPMX19_03838 0.46 -0.8
76,539 + MPMX19_03838 0.46 -0.8
76,539 + MPMX19_03838 0.46 +0.3
76,539 + MPMX19_03838 0.46 -0.5
76,539 + MPMX19_03838 0.46 -1.4
76,539 + MPMX19_03838 0.46 +0.1
76,540 - MPMX19_03838 0.46 +0.6
76,540 - MPMX19_03838 0.46 -1.2
76,540 - MPMX19_03838 0.46 -0.4
76,540 - MPMX19_03838 0.46 +1.0
76,540 - MPMX19_03838 0.46 -1.4
76,540 - MPMX19_03838 0.46 -1.0
76,540 - MPMX19_03838 0.46 -0.3
76,540 - MPMX19_03838 0.46 -0.6
76,540 - MPMX19_03838 0.46 +0.1
76,540 - MPMX19_03838 0.46 +0.5
76,540 - MPMX19_03838 0.46 +0.3
76,540 - MPMX19_03838 0.46 +0.3
76,540 - MPMX19_03838 0.46 +0.5
76,540 - MPMX19_03838 0.46 -0.7
76,554 + MPMX19_03838 0.47 -0.2
76,555 - MPMX19_03838 0.47 -0.5
76,654 - MPMX19_03838 0.57 -1.1
76,654 - MPMX19_03838 0.57 +0.0
76,707 + MPMX19_03838 0.62 -0.2
76,707 + MPMX19_03838 0.62 +1.2
76,707 + MPMX19_03838 0.62 -1.3
76,707 + MPMX19_03838 0.62 +0.3
76,707 + MPMX19_03838 0.62 -1.3
76,707 + MPMX19_03838 0.62 +0.3
76,707 + MPMX19_03838 0.62 -0.3
76,708 - MPMX19_03838 0.63 -2.0
76,708 - MPMX19_03838 0.63 -0.4
76,708 - MPMX19_03838 0.63 +0.0
76,708 - MPMX19_03838 0.63 +0.3
76,728 + MPMX19_03838 0.65 -0.3
76,728 + MPMX19_03838 0.65 +0.7
76,728 + MPMX19_03838 0.65 +1.3
76,729 - MPMX19_03838 0.65 +0.2
76,824 + MPMX19_03838 0.74 -0.5
76,824 + MPMX19_03838 0.74 -0.7
76,824 + MPMX19_03838 0.74 -0.8
76,824 + MPMX19_03838 0.74 +0.6
76,824 + MPMX19_03838 0.74 +0.2
76,824 + MPMX19_03838 0.74 -0.1
76,824 + MPMX19_03838 0.74 -0.2
76,824 + MPMX19_03838 0.74 -0.8
76,824 + MPMX19_03838 0.74 -0.6
76,825 - MPMX19_03838 0.74 -1.3
76,825 - MPMX19_03838 0.74 +0.0
76,825 - MPMX19_03838 0.74 -0.2
76,825 - MPMX19_03838 0.74 -1.1
76,825 - MPMX19_03838 0.74 +1.0
76,825 - MPMX19_03838 0.74 -0.1

Or see this region's nucleotide sequence