Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03815

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03814 and MPMX19_03815 are separated by 11 nucleotidesMPMX19_03815 and MPMX19_03816 are separated by 89 nucleotidesMPMX19_03816 and MPMX19_03817 are separated by 172 nucleotides MPMX19_03814: MPMX19_03814 - hypothetical protein, at 51,338 to 52,486 _03814 MPMX19_03815: MPMX19_03815 - hypothetical protein, at 52,498 to 52,992 _03815 MPMX19_03816: MPMX19_03816 - hypothetical protein, at 53,082 to 53,720 _03816 MPMX19_03817: MPMX19_03817 - 6-deoxy-6-sulfogluconolactonase, at 53,893 to 54,786 _03817 Position (kb) 52 53Strain fitness (log2 ratio) -2 -1 0 1 2 3at 51.512 kb on + strand, within MPMX19_03814at 51.512 kb on + strand, within MPMX19_03814at 51.512 kb on + strand, within MPMX19_03814at 51.512 kb on + strand, within MPMX19_03814at 51.512 kb on + strand, within MPMX19_03814at 51.512 kb on + strand, within MPMX19_03814at 51.513 kb on - strand, within MPMX19_03814at 51.513 kb on - strand, within MPMX19_03814at 51.513 kb on - strand, within MPMX19_03814at 51.513 kb on - strand, within MPMX19_03814at 51.513 kb on - strand, within MPMX19_03814at 51.636 kb on + strand, within MPMX19_03814at 51.636 kb on + strand, within MPMX19_03814at 51.636 kb on + strand, within MPMX19_03814at 51.637 kb on - strand, within MPMX19_03814at 51.637 kb on - strand, within MPMX19_03814at 51.637 kb on - strand, within MPMX19_03814at 51.637 kb on - strand, within MPMX19_03814at 51.997 kb on + strand, within MPMX19_03814at 51.997 kb on + strand, within MPMX19_03814at 51.997 kb on + strand, within MPMX19_03814at 51.997 kb on + strand, within MPMX19_03814at 51.997 kb on + strand, within MPMX19_03814at 51.998 kb on - strand, within MPMX19_03814at 51.998 kb on - strand, within MPMX19_03814at 52.076 kb on + strand, within MPMX19_03814at 52.077 kb on - strand, within MPMX19_03814at 52.077 kb on - strand, within MPMX19_03814at 52.077 kb on - strand, within MPMX19_03814at 52.079 kb on + strand, within MPMX19_03814at 52.079 kb on + strand, within MPMX19_03814at 52.080 kb on - strand, within MPMX19_03814at 52.080 kb on - strand, within MPMX19_03814at 52.117 kb on + strand, within MPMX19_03814at 52.117 kb on + strand, within MPMX19_03814at 52.117 kb on + strand, within MPMX19_03814at 52.118 kb on - strand, within MPMX19_03814at 52.118 kb on - strand, within MPMX19_03814at 52.118 kb on - strand, within MPMX19_03814at 52.118 kb on - strand, within MPMX19_03814at 52.118 kb on - strand, within MPMX19_03814at 52.118 kb on - strand, within MPMX19_03814at 52.118 kb on - strand, within MPMX19_03814at 52.118 kb on - strand, within MPMX19_03814at 52.118 kb on - strand, within MPMX19_03814at 52.184 kb on + strand, within MPMX19_03814at 52.185 kb on - strand, within MPMX19_03814at 52.185 kb on - strand, within MPMX19_03814at 52.232 kb on + strand, within MPMX19_03814at 52.233 kb on - strand, within MPMX19_03814at 52.233 kb on - strand, within MPMX19_03814at 52.233 kb on - strand, within MPMX19_03814at 52.258 kb on + strand, within MPMX19_03814at 52.259 kb on - strand, within MPMX19_03814at 52.259 kb on - strand, within MPMX19_03814at 52.361 kb on + strand, within MPMX19_03814at 52.361 kb on + strand, within MPMX19_03814at 52.361 kb on + strand, within MPMX19_03814at 52.361 kb on + strand, within MPMX19_03814at 52.361 kb on + strand, within MPMX19_03814at 52.362 kb on - strand, within MPMX19_03814at 52.362 kb on - strand, within MPMX19_03814at 52.362 kb on - strand, within MPMX19_03814at 52.363 kb on + strand, within MPMX19_03814at 52.364 kb on - strand, within MPMX19_03814at 52.386 kb on - strandat 52.386 kb on - strandat 52.386 kb on - strandat 52.558 kb on + strand, within MPMX19_03815at 52.558 kb on + strand, within MPMX19_03815at 52.558 kb on + strand, within MPMX19_03815at 52.558 kb on + strand, within MPMX19_03815at 52.558 kb on + strand, within MPMX19_03815at 52.559 kb on - strand, within MPMX19_03815at 52.559 kb on - strand, within MPMX19_03815at 52.559 kb on - strand, within MPMX19_03815at 52.559 kb on - strand, within MPMX19_03815at 52.559 kb on - strand, within MPMX19_03815at 52.559 kb on - strand, within MPMX19_03815at 52.673 kb on - strand, within MPMX19_03815at 52.673 kb on - strand, within MPMX19_03815at 52.708 kb on - strand, within MPMX19_03815at 52.708 kb on - strand, within MPMX19_03815at 52.757 kb on - strand, within MPMX19_03815at 52.920 kb on + strand, within MPMX19_03815at 52.920 kb on + strand, within MPMX19_03815at 52.920 kb on + strand, within MPMX19_03815at 52.920 kb on + strand, within MPMX19_03815at 52.920 kb on + strand, within MPMX19_03815at 52.920 kb on + strand, within MPMX19_03815at 52.921 kb on - strand, within MPMX19_03815at 52.921 kb on - strand, within MPMX19_03815at 52.997 kb on + strandat 53.009 kb on + strandat 53.009 kb on + strandat 53.009 kb on + strandat 53.009 kb on + strandat 53.009 kb on + strandat 53.009 kb on + strandat 53.010 kb on - strandat 53.010 kb on - strandat 53.010 kb on - strandat 53.058 kb on + strandat 53.058 kb on + strandat 53.058 kb on + strandat 53.058 kb on + strandat 53.058 kb on + strandat 53.058 kb on + strandat 53.058 kb on + strandat 53.632 kb on - strand, within MPMX19_03816at 53.632 kb on - strand, within MPMX19_03816at 53.646 kb on + strand, within MPMX19_03816at 53.646 kb on + strand, within MPMX19_03816at 53.646 kb on + strand, within MPMX19_03816at 53.655 kb on + strand, within MPMX19_03816

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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51,512 + MPMX19_03814 0.15 -0.8
51,512 + MPMX19_03814 0.15 -0.4
51,512 + MPMX19_03814 0.15 -2.0
51,512 + MPMX19_03814 0.15 +0.2
51,512 + MPMX19_03814 0.15 -1.7
51,512 + MPMX19_03814 0.15 +0.3
51,513 - MPMX19_03814 0.15 +0.7
51,513 - MPMX19_03814 0.15 +0.7
51,513 - MPMX19_03814 0.15 -0.4
51,513 - MPMX19_03814 0.15 -0.7
51,513 - MPMX19_03814 0.15 +0.2
51,636 + MPMX19_03814 0.26 -1.1
51,636 + MPMX19_03814 0.26 -0.1
51,636 + MPMX19_03814 0.26 -0.3
51,637 - MPMX19_03814 0.26 -0.3
51,637 - MPMX19_03814 0.26 -1.4
51,637 - MPMX19_03814 0.26 -0.1
51,637 - MPMX19_03814 0.26 +0.2
51,997 + MPMX19_03814 0.57 -1.0
51,997 + MPMX19_03814 0.57 -1.0
51,997 + MPMX19_03814 0.57 +0.7
51,997 + MPMX19_03814 0.57 -0.1
51,997 + MPMX19_03814 0.57 -1.6
51,998 - MPMX19_03814 0.57 +1.2
51,998 - MPMX19_03814 0.57 -0.5
52,076 + MPMX19_03814 0.64 -0.5
52,077 - MPMX19_03814 0.64 -0.4
52,077 - MPMX19_03814 0.64 +0.4
52,077 - MPMX19_03814 0.64 +0.2
52,079 + MPMX19_03814 0.64 -2.1
52,079 + MPMX19_03814 0.64 +0.7
52,080 - MPMX19_03814 0.65 -0.6
52,080 - MPMX19_03814 0.65 +0.3
52,117 + MPMX19_03814 0.68 -0.6
52,117 + MPMX19_03814 0.68 -1.0
52,117 + MPMX19_03814 0.68 -1.1
52,118 - MPMX19_03814 0.68 -0.3
52,118 - MPMX19_03814 0.68 -0.8
52,118 - MPMX19_03814 0.68 +0.5
52,118 - MPMX19_03814 0.68 -1.7
52,118 - MPMX19_03814 0.68 -1.4
52,118 - MPMX19_03814 0.68 -1.0
52,118 - MPMX19_03814 0.68 +0.7
52,118 - MPMX19_03814 0.68 -1.4
52,118 - MPMX19_03814 0.68 -0.1
52,184 + MPMX19_03814 0.74 +0.0
52,185 - MPMX19_03814 0.74 +0.8
52,185 - MPMX19_03814 0.74 +3.3
52,232 + MPMX19_03814 0.78 -2.2
52,233 - MPMX19_03814 0.78 -1.1
52,233 - MPMX19_03814 0.78 +0.1
52,233 - MPMX19_03814 0.78 +1.0
52,258 + MPMX19_03814 0.80 +0.1
52,259 - MPMX19_03814 0.80 -0.7
52,259 - MPMX19_03814 0.80 -0.3
52,361 + MPMX19_03814 0.89 -1.3
52,361 + MPMX19_03814 0.89 -0.2
52,361 + MPMX19_03814 0.89 +0.1
52,361 + MPMX19_03814 0.89 -0.6
52,361 + MPMX19_03814 0.89 -0.6
52,362 - MPMX19_03814 0.89 -0.5
52,362 - MPMX19_03814 0.89 +0.4
52,362 - MPMX19_03814 0.89 +2.2
52,363 + MPMX19_03814 0.89 -0.1
52,364 - MPMX19_03814 0.89 -0.3
52,386 - -0.4
52,386 - -0.7
52,386 - +0.6
52,558 + MPMX19_03815 0.12 +0.3
52,558 + MPMX19_03815 0.12 -1.0
52,558 + MPMX19_03815 0.12 +0.5
52,558 + MPMX19_03815 0.12 -0.8
52,558 + MPMX19_03815 0.12 +0.0
52,559 - MPMX19_03815 0.12 -0.1
52,559 - MPMX19_03815 0.12 -1.0
52,559 - MPMX19_03815 0.12 -1.3
52,559 - MPMX19_03815 0.12 +0.8
52,559 - MPMX19_03815 0.12 +0.7
52,559 - MPMX19_03815 0.12 -0.4
52,673 - MPMX19_03815 0.35 -0.3
52,673 - MPMX19_03815 0.35 -0.1
52,708 - MPMX19_03815 0.42 -1.2
52,708 - MPMX19_03815 0.42 -0.4
52,757 - MPMX19_03815 0.52 +0.2
52,920 + MPMX19_03815 0.85 -0.1
52,920 + MPMX19_03815 0.85 +0.6
52,920 + MPMX19_03815 0.85 -2.0
52,920 + MPMX19_03815 0.85 -0.3
52,920 + MPMX19_03815 0.85 -0.5
52,920 + MPMX19_03815 0.85 -1.8
52,921 - MPMX19_03815 0.85 -0.6
52,921 - MPMX19_03815 0.85 -0.2
52,997 + +1.7
53,009 + +0.9
53,009 + -0.7
53,009 + +2.3
53,009 + -0.1
53,009 + -0.5
53,009 + -1.0
53,010 - +1.0
53,010 - -2.3
53,010 - -1.0
53,058 + -0.5
53,058 + +0.0
53,058 + -0.5
53,058 + -1.1
53,058 + -2.1
53,058 + -1.7
53,058 + -1.3
53,632 - MPMX19_03816 0.86 +0.4
53,632 - MPMX19_03816 0.86 -0.7
53,646 + MPMX19_03816 0.88 +0.5
53,646 + MPMX19_03816 0.88 +0.9
53,646 + MPMX19_03816 0.88 -1.0
53,655 + MPMX19_03816 0.90 +0.2

Or see this region's nucleotide sequence