Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03798

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03797 and MPMX19_03798 are separated by 125 nucleotidesMPMX19_03798 and MPMX19_03799 are separated by 383 nucleotides MPMX19_03797: MPMX19_03797 - hypothetical protein, at 32,110 to 33,336 _03797 MPMX19_03798: MPMX19_03798 - hypothetical protein, at 33,462 to 34,343 _03798 MPMX19_03799: MPMX19_03799 - hypothetical protein, at 34,727 to 35,869 _03799 Position (kb) 33 34 35Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 32.473 kb on + strand, within MPMX19_03797at 32.473 kb on + strand, within MPMX19_03797at 32.473 kb on + strand, within MPMX19_03797at 32.473 kb on + strand, within MPMX19_03797at 32.473 kb on + strand, within MPMX19_03797at 32.473 kb on + strand, within MPMX19_03797at 32.473 kb on + strand, within MPMX19_03797at 32.474 kb on - strand, within MPMX19_03797at 32.474 kb on - strand, within MPMX19_03797at 32.474 kb on - strand, within MPMX19_03797at 32.474 kb on - strand, within MPMX19_03797at 32.474 kb on - strand, within MPMX19_03797at 32.761 kb on + strand, within MPMX19_03797at 32.761 kb on + strand, within MPMX19_03797at 32.761 kb on + strand, within MPMX19_03797at 32.761 kb on + strand, within MPMX19_03797at 32.762 kb on - strand, within MPMX19_03797at 32.762 kb on - strand, within MPMX19_03797at 32.762 kb on - strand, within MPMX19_03797at 32.762 kb on - strand, within MPMX19_03797at 32.783 kb on + strand, within MPMX19_03797at 32.827 kb on + strand, within MPMX19_03797at 32.827 kb on + strand, within MPMX19_03797at 32.827 kb on + strand, within MPMX19_03797at 32.827 kb on + strand, within MPMX19_03797at 32.827 kb on + strand, within MPMX19_03797at 32.827 kb on + strand, within MPMX19_03797at 32.827 kb on + strand, within MPMX19_03797at 32.828 kb on - strand, within MPMX19_03797at 32.828 kb on - strand, within MPMX19_03797at 32.828 kb on - strand, within MPMX19_03797at 32.828 kb on - strand, within MPMX19_03797at 32.828 kb on - strand, within MPMX19_03797at 32.828 kb on - strand, within MPMX19_03797at 32.828 kb on - strand, within MPMX19_03797at 32.828 kb on - strand, within MPMX19_03797at 32.864 kb on + strand, within MPMX19_03797at 32.864 kb on + strand, within MPMX19_03797at 32.864 kb on + strand, within MPMX19_03797at 32.865 kb on - strand, within MPMX19_03797at 32.932 kb on + strand, within MPMX19_03797at 32.932 kb on + strand, within MPMX19_03797at 32.932 kb on + strand, within MPMX19_03797at 32.932 kb on + strand, within MPMX19_03797at 32.932 kb on + strand, within MPMX19_03797at 32.932 kb on + strand, within MPMX19_03797at 32.932 kb on + strand, within MPMX19_03797at 32.932 kb on + strand, within MPMX19_03797at 32.933 kb on - strand, within MPMX19_03797at 32.933 kb on - strand, within MPMX19_03797at 32.933 kb on - strand, within MPMX19_03797at 32.933 kb on - strand, within MPMX19_03797at 32.933 kb on - strand, within MPMX19_03797at 32.933 kb on - strand, within MPMX19_03797at 33.003 kb on + strand, within MPMX19_03797at 33.003 kb on + strand, within MPMX19_03797at 33.004 kb on - strand, within MPMX19_03797at 33.011 kb on + strand, within MPMX19_03797at 33.082 kb on + strand, within MPMX19_03797at 33.082 kb on + strand, within MPMX19_03797at 33.083 kb on - strand, within MPMX19_03797at 33.083 kb on - strand, within MPMX19_03797at 33.175 kb on + strand, within MPMX19_03797at 33.175 kb on + strand, within MPMX19_03797at 33.175 kb on + strand, within MPMX19_03797at 33.176 kb on - strand, within MPMX19_03797at 33.176 kb on - strand, within MPMX19_03797at 33.176 kb on - strand, within MPMX19_03797at 33.214 kb on + strandat 33.214 kb on + strandat 33.214 kb on + strandat 33.214 kb on + strandat 33.214 kb on + strandat 33.214 kb on + strandat 33.215 kb on - strandat 33.215 kb on - strandat 33.215 kb on - strandat 33.284 kb on - strandat 33.284 kb on - strandat 33.334 kb on + strandat 33.418 kb on - strandat 33.419 kb on + strandat 33.612 kb on - strand, within MPMX19_03798at 33.630 kb on - strand, within MPMX19_03798at 33.716 kb on + strand, within MPMX19_03798at 33.717 kb on - strand, within MPMX19_03798at 33.792 kb on + strand, within MPMX19_03798at 33.792 kb on + strand, within MPMX19_03798at 33.795 kb on - strand, within MPMX19_03798at 33.795 kb on - strand, within MPMX19_03798at 33.804 kb on + strand, within MPMX19_03798at 33.805 kb on - strand, within MPMX19_03798at 33.807 kb on - strand, within MPMX19_03798at 33.826 kb on + strand, within MPMX19_03798at 33.983 kb on + strand, within MPMX19_03798at 34.347 kb on + strandat 34.404 kb on + strandat 34.412 kb on + strandat 34.413 kb on - strandat 34.414 kb on + strandat 34.414 kb on + strandat 34.414 kb on + strandat 34.414 kb on + strandat 34.414 kb on + strandat 34.414 kb on + strandat 34.414 kb on + strandat 34.414 kb on + strandat 34.415 kb on - strandat 34.415 kb on - strandat 34.569 kb on + strandat 34.570 kb on - strandat 34.570 kb on - strandat 34.651 kb on + strandat 34.652 kb on - strandat 34.652 kb on - strandat 34.652 kb on - strandat 34.652 kb on - strandat 34.654 kb on - strandat 34.654 kb on - strandat 34.654 kb on - strandat 34.654 kb on - strandat 34.685 kb on + strandat 34.847 kb on + strand, within MPMX19_03799at 34.847 kb on + strand, within MPMX19_03799at 34.847 kb on + strand, within MPMX19_03799at 34.847 kb on + strand, within MPMX19_03799at 34.847 kb on + strand, within MPMX19_03799at 34.847 kb on + strand, within MPMX19_03799at 34.847 kb on + strand, within MPMX19_03799at 34.847 kb on + strand, within MPMX19_03799at 34.847 kb on + strand, within MPMX19_03799at 34.848 kb on - strand, within MPMX19_03799at 34.848 kb on - strand, within MPMX19_03799at 34.848 kb on - strand, within MPMX19_03799at 34.848 kb on - strand, within MPMX19_03799at 34.848 kb on - strand, within MPMX19_03799at 34.848 kb on - strand, within MPMX19_03799at 34.848 kb on - strand, within MPMX19_03799at 34.848 kb on - strand, within MPMX19_03799at 34.848 kb on - strand, within MPMX19_03799at 34.848 kb on - strand, within MPMX19_03799at 34.848 kb on - strand, within MPMX19_03799at 34.848 kb on - strand, within MPMX19_03799at 34.848 kb on - strand, within MPMX19_03799at 34.848 kb on - strand, within MPMX19_03799at 34.848 kb on - strand, within MPMX19_03799at 34.848 kb on - strand, within MPMX19_03799at 34.848 kb on - strand, within MPMX19_03799at 34.848 kb on - strand, within MPMX19_03799at 34.848 kb on - strand, within MPMX19_03799at 34.848 kb on - strand, within MPMX19_03799at 34.849 kb on - strand, within MPMX19_03799at 34.910 kb on + strand, within MPMX19_03799at 34.910 kb on + strand, within MPMX19_03799at 34.910 kb on + strand, within MPMX19_03799at 34.910 kb on + strand, within MPMX19_03799at 34.910 kb on + strand, within MPMX19_03799at 34.910 kb on + strand, within MPMX19_03799at 34.910 kb on + strand, within MPMX19_03799at 34.911 kb on - strand, within MPMX19_03799at 34.911 kb on - strand, within MPMX19_03799at 34.911 kb on - strand, within MPMX19_03799at 35.075 kb on + strand, within MPMX19_03799at 35.075 kb on + strand, within MPMX19_03799at 35.075 kb on + strand, within MPMX19_03799at 35.075 kb on + strand, within MPMX19_03799at 35.075 kb on + strand, within MPMX19_03799at 35.075 kb on + strand, within MPMX19_03799at 35.075 kb on + strand, within MPMX19_03799at 35.075 kb on + strand, within MPMX19_03799at 35.075 kb on + strand, within MPMX19_03799at 35.075 kb on + strand, within MPMX19_03799at 35.076 kb on - strand, within MPMX19_03799at 35.076 kb on - strand, within MPMX19_03799at 35.076 kb on - strand, within MPMX19_03799at 35.076 kb on - strand, within MPMX19_03799at 35.076 kb on - strand, within MPMX19_03799at 35.076 kb on - strand, within MPMX19_03799at 35.076 kb on - strand, within MPMX19_03799at 35.076 kb on - strand, within MPMX19_03799at 35.076 kb on - strand, within MPMX19_03799at 35.246 kb on + strand, within MPMX19_03799at 35.246 kb on + strand, within MPMX19_03799at 35.246 kb on + strand, within MPMX19_03799at 35.247 kb on - strand, within MPMX19_03799at 35.247 kb on - strand, within MPMX19_03799

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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32,473 + MPMX19_03797 0.30 +0.7
32,473 + MPMX19_03797 0.30 -0.3
32,473 + MPMX19_03797 0.30 -0.0
32,473 + MPMX19_03797 0.30 +0.4
32,473 + MPMX19_03797 0.30 -0.7
32,473 + MPMX19_03797 0.30 +1.3
32,473 + MPMX19_03797 0.30 -0.1
32,474 - MPMX19_03797 0.30 +0.2
32,474 - MPMX19_03797 0.30 +0.0
32,474 - MPMX19_03797 0.30 -2.7
32,474 - MPMX19_03797 0.30 +0.2
32,474 - MPMX19_03797 0.30 -1.5
32,761 + MPMX19_03797 0.53 -0.2
32,761 + MPMX19_03797 0.53 -0.6
32,761 + MPMX19_03797 0.53 +1.2
32,761 + MPMX19_03797 0.53 -0.0
32,762 - MPMX19_03797 0.53 -2.2
32,762 - MPMX19_03797 0.53 +0.3
32,762 - MPMX19_03797 0.53 -2.2
32,762 - MPMX19_03797 0.53 +1.3
32,783 + MPMX19_03797 0.55 -1.0
32,827 + MPMX19_03797 0.58 -0.1
32,827 + MPMX19_03797 0.58 -0.5
32,827 + MPMX19_03797 0.58 -0.1
32,827 + MPMX19_03797 0.58 +0.0
32,827 + MPMX19_03797 0.58 -0.8
32,827 + MPMX19_03797 0.58 +1.9
32,827 + MPMX19_03797 0.58 +0.0
32,828 - MPMX19_03797 0.59 +0.0
32,828 - MPMX19_03797 0.59 -1.2
32,828 - MPMX19_03797 0.59 -0.6
32,828 - MPMX19_03797 0.59 +1.2
32,828 - MPMX19_03797 0.59 -0.3
32,828 - MPMX19_03797 0.59 -0.0
32,828 - MPMX19_03797 0.59 +0.9
32,828 - MPMX19_03797 0.59 +0.3
32,864 + MPMX19_03797 0.61 -0.8
32,864 + MPMX19_03797 0.61 +0.4
32,864 + MPMX19_03797 0.61 +0.2
32,865 - MPMX19_03797 0.62 -0.6
32,932 + MPMX19_03797 0.67 +0.6
32,932 + MPMX19_03797 0.67 -0.4
32,932 + MPMX19_03797 0.67 -1.6
32,932 + MPMX19_03797 0.67 +0.2
32,932 + MPMX19_03797 0.67 -0.5
32,932 + MPMX19_03797 0.67 -1.5
32,932 + MPMX19_03797 0.67 +1.5
32,932 + MPMX19_03797 0.67 -0.6
32,933 - MPMX19_03797 0.67 -0.8
32,933 - MPMX19_03797 0.67 +1.1
32,933 - MPMX19_03797 0.67 -1.6
32,933 - MPMX19_03797 0.67 +1.7
32,933 - MPMX19_03797 0.67 -1.0
32,933 - MPMX19_03797 0.67 -2.5
33,003 + MPMX19_03797 0.73 +0.4
33,003 + MPMX19_03797 0.73 +0.1
33,004 - MPMX19_03797 0.73 +0.4
33,011 + MPMX19_03797 0.73 +1.2
33,082 + MPMX19_03797 0.79 -0.6
33,082 + MPMX19_03797 0.79 -0.3
33,083 - MPMX19_03797 0.79 -1.7
33,083 - MPMX19_03797 0.79 -2.0
33,175 + MPMX19_03797 0.87 +1.1
33,175 + MPMX19_03797 0.87 -0.8
33,175 + MPMX19_03797 0.87 -0.2
33,176 - MPMX19_03797 0.87 -1.1
33,176 - MPMX19_03797 0.87 -0.8
33,176 - MPMX19_03797 0.87 -0.5
33,214 + -0.3
33,214 + -0.4
33,214 + -0.4
33,214 + -0.3
33,214 + +0.4
33,214 + +1.5
33,215 - -1.4
33,215 - -0.8
33,215 - -0.3
33,284 - +0.2
33,284 - -0.6
33,334 + +0.4
33,418 - -2.3
33,419 + +1.7
33,612 - MPMX19_03798 0.17 -0.8
33,630 - MPMX19_03798 0.19 -0.3
33,716 + MPMX19_03798 0.29 -1.3
33,717 - MPMX19_03798 0.29 -1.4
33,792 + MPMX19_03798 0.37 +0.2
33,792 + MPMX19_03798 0.37 -1.1
33,795 - MPMX19_03798 0.38 +1.0
33,795 - MPMX19_03798 0.38 -1.1
33,804 + MPMX19_03798 0.39 -1.2
33,805 - MPMX19_03798 0.39 +0.2
33,807 - MPMX19_03798 0.39 +0.7
33,826 + MPMX19_03798 0.41 -0.1
33,983 + MPMX19_03798 0.59 -1.4
34,347 + -1.3
34,404 + -1.1
34,412 + +0.5
34,413 - +0.3
34,414 + -1.3
34,414 + -1.0
34,414 + -0.8
34,414 + -0.6
34,414 + -0.7
34,414 + +1.5
34,414 + -2.7
34,414 + -0.6
34,415 - +0.4
34,415 - +0.4
34,569 + +0.9
34,570 - -0.5
34,570 - -1.3
34,651 + -0.6
34,652 - -1.4
34,652 - -1.7
34,652 - +0.0
34,652 - -0.6
34,654 - -0.8
34,654 - -0.8
34,654 - +0.3
34,654 - -0.3
34,685 + -0.8
34,847 + MPMX19_03799 0.10 +0.1
34,847 + MPMX19_03799 0.10 -0.5
34,847 + MPMX19_03799 0.10 -2.3
34,847 + MPMX19_03799 0.10 +0.2
34,847 + MPMX19_03799 0.10 -0.1
34,847 + MPMX19_03799 0.10 +1.7
34,847 + MPMX19_03799 0.10 -1.2
34,847 + MPMX19_03799 0.10 +0.0
34,847 + MPMX19_03799 0.10 +0.8
34,848 - MPMX19_03799 0.11 +0.1
34,848 - MPMX19_03799 0.11 +0.4
34,848 - MPMX19_03799 0.11 -1.1
34,848 - MPMX19_03799 0.11 +0.1
34,848 - MPMX19_03799 0.11 +0.4
34,848 - MPMX19_03799 0.11 -0.8
34,848 - MPMX19_03799 0.11 +0.7
34,848 - MPMX19_03799 0.11 -0.1
34,848 - MPMX19_03799 0.11 -0.1
34,848 - MPMX19_03799 0.11 -1.3
34,848 - MPMX19_03799 0.11 +1.4
34,848 - MPMX19_03799 0.11 -0.6
34,848 - MPMX19_03799 0.11 -0.5
34,848 - MPMX19_03799 0.11 +0.2
34,848 - MPMX19_03799 0.11 +0.9
34,848 - MPMX19_03799 0.11 -2.2
34,848 - MPMX19_03799 0.11 +0.3
34,848 - MPMX19_03799 0.11 +1.2
34,848 - MPMX19_03799 0.11 -0.5
34,848 - MPMX19_03799 0.11 -1.3
34,849 - MPMX19_03799 0.11 +0.7
34,910 + MPMX19_03799 0.16 -3.0
34,910 + MPMX19_03799 0.16 +0.4
34,910 + MPMX19_03799 0.16 +0.3
34,910 + MPMX19_03799 0.16 -0.8
34,910 + MPMX19_03799 0.16 -0.6
34,910 + MPMX19_03799 0.16 -0.7
34,910 + MPMX19_03799 0.16 +0.2
34,911 - MPMX19_03799 0.16 -1.1
34,911 - MPMX19_03799 0.16 +0.0
34,911 - MPMX19_03799 0.16 -0.3
35,075 + MPMX19_03799 0.30 -0.4
35,075 + MPMX19_03799 0.30 +0.2
35,075 + MPMX19_03799 0.30 +0.1
35,075 + MPMX19_03799 0.30 -0.5
35,075 + MPMX19_03799 0.30 -0.5
35,075 + MPMX19_03799 0.30 -0.8
35,075 + MPMX19_03799 0.30 -0.1
35,075 + MPMX19_03799 0.30 -0.1
35,075 + MPMX19_03799 0.30 -0.4
35,075 + MPMX19_03799 0.30 -0.5
35,076 - MPMX19_03799 0.31 -1.1
35,076 - MPMX19_03799 0.31 -0.1
35,076 - MPMX19_03799 0.31 -1.7
35,076 - MPMX19_03799 0.31 +1.7
35,076 - MPMX19_03799 0.31 -1.2
35,076 - MPMX19_03799 0.31 +0.7
35,076 - MPMX19_03799 0.31 +0.3
35,076 - MPMX19_03799 0.31 +0.3
35,076 - MPMX19_03799 0.31 -0.3
35,246 + MPMX19_03799 0.45 +0.2
35,246 + MPMX19_03799 0.45 +0.2
35,246 + MPMX19_03799 0.45 +0.1
35,247 - MPMX19_03799 0.45 -0.3
35,247 - MPMX19_03799 0.45 -1.1

Or see this region's nucleotide sequence