Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03767 and MPMX19_03768 are separated by 45 nucleotides MPMX19_03768 and MPMX19_03769 are separated by 284 nucleotides
MPMX19_03767: MPMX19_03767 - Sensor histidine kinase RcsC, at 8,093 to 11,275
_03767
MPMX19_03768: MPMX19_03768 - hypothetical protein, at 11,321 to 12,223
_03768
MPMX19_03769: MPMX19_03769 - hypothetical protein, at 12,508 to 13,458
_03769
Position (kb) 11
12
13 Strain fitness (log2 ratio) -2
-1
0
1 at 10.592 kb on + strand, within MPMX19_03767 at 10.593 kb on - strand, within MPMX19_03767 at 10.593 kb on - strand, within MPMX19_03767 at 10.613 kb on + strand, within MPMX19_03767 at 10.613 kb on + strand, within MPMX19_03767 at 10.614 kb on - strand, within MPMX19_03767 at 10.614 kb on - strand, within MPMX19_03767 at 10.614 kb on - strand, within MPMX19_03767 at 11.166 kb on - strand at 11.166 kb on - strand at 11.288 kb on - strand at 11.322 kb on + strand at 11.361 kb on - strand at 11.492 kb on - strand, within MPMX19_03768 at 11.601 kb on - strand, within MPMX19_03768 at 11.700 kb on + strand, within MPMX19_03768 at 11.700 kb on + strand, within MPMX19_03768 at 11.786 kb on + strand, within MPMX19_03768 at 11.810 kb on - strand, within MPMX19_03768 at 11.870 kb on + strand, within MPMX19_03768 at 12.118 kb on + strand, within MPMX19_03768 at 12.176 kb on + strand at 12.297 kb on - strand at 12.433 kb on + strand at 12.481 kb on - strand at 12.484 kb on + strand at 12.484 kb on + strand at 12.503 kb on - strand at 12.547 kb on + strand at 12.590 kb on + strand at 12.754 kb on - strand, within MPMX19_03769 at 12.754 kb on - strand, within MPMX19_03769 at 12.885 kb on + strand, within MPMX19_03769 at 12.886 kb on - strand, within MPMX19_03769 at 12.886 kb on - strand, within MPMX19_03769 at 12.886 kb on - strand, within MPMX19_03769 at 12.961 kb on + strand, within MPMX19_03769 at 12.961 kb on + strand, within MPMX19_03769 at 12.962 kb on - strand, within MPMX19_03769 at 13.024 kb on - strand, within MPMX19_03769 at 13.030 kb on + strand, within MPMX19_03769 at 13.106 kb on + strand, within MPMX19_03769 at 13.106 kb on + strand, within MPMX19_03769 at 13.106 kb on + strand, within MPMX19_03769 at 13.106 kb on + strand, within MPMX19_03769 at 13.106 kb on + strand, within MPMX19_03769 at 13.136 kb on + strand, within MPMX19_03769 at 13.136 kb on + strand, within MPMX19_03769 at 13.136 kb on + strand, within MPMX19_03769 at 13.136 kb on + strand, within MPMX19_03769 at 13.137 kb on - strand, within MPMX19_03769 at 13.137 kb on - strand, within MPMX19_03769 at 13.137 kb on - strand, within MPMX19_03769 at 13.137 kb on - strand, within MPMX19_03769 at 13.183 kb on + strand, within MPMX19_03769 at 13.184 kb on - strand, within MPMX19_03769 at 13.184 kb on - strand, within MPMX19_03769 at 13.184 kb on - strand, within MPMX19_03769
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 10,592 + MPMX19_03767 0.79 -0.5 10,593 - MPMX19_03767 0.79 -1.1 10,593 - MPMX19_03767 0.79 +0.5 10,613 + MPMX19_03767 0.79 +1.4 10,613 + MPMX19_03767 0.79 -0.6 10,614 - MPMX19_03767 0.79 -0.5 10,614 - MPMX19_03767 0.79 +0.6 10,614 - MPMX19_03767 0.79 -1.3 11,166 - +0.2 11,166 - +0.4 11,288 - -0.8 11,322 + -1.2 11,361 - -0.9 11,492 - MPMX19_03768 0.19 -0.7 11,601 - MPMX19_03768 0.31 +0.5 11,700 + MPMX19_03768 0.42 -0.1 11,700 + MPMX19_03768 0.42 -0.6 11,786 + MPMX19_03768 0.51 -0.4 11,810 - MPMX19_03768 0.54 +0.2 11,870 + MPMX19_03768 0.61 -1.2 12,118 + MPMX19_03768 0.88 -0.6 12,176 + +0.1 12,297 - -1.3 12,433 + -0.4 12,481 - -0.4 12,484 + +1.7 12,484 + -0.2 12,503 - -0.4 12,547 + +0.7 12,590 + +0.3 12,754 - MPMX19_03769 0.26 +0.6 12,754 - MPMX19_03769 0.26 +0.4 12,885 + MPMX19_03769 0.40 -0.7 12,886 - MPMX19_03769 0.40 +0.7 12,886 - MPMX19_03769 0.40 -1.1 12,886 - MPMX19_03769 0.40 -1.3 12,961 + MPMX19_03769 0.48 +0.5 12,961 + MPMX19_03769 0.48 -1.8 12,962 - MPMX19_03769 0.48 +0.3 13,024 - MPMX19_03769 0.54 +1.7 13,030 + MPMX19_03769 0.55 +0.7 13,106 + MPMX19_03769 0.63 +1.3 13,106 + MPMX19_03769 0.63 +0.2 13,106 + MPMX19_03769 0.63 -1.8 13,106 + MPMX19_03769 0.63 +0.2 13,106 + MPMX19_03769 0.63 -0.3 13,136 + MPMX19_03769 0.66 -0.9 13,136 + MPMX19_03769 0.66 -0.7 13,136 + MPMX19_03769 0.66 +1.2 13,136 + MPMX19_03769 0.66 +1.0 13,137 - MPMX19_03769 0.66 +0.1 13,137 - MPMX19_03769 0.66 +1.2 13,137 - MPMX19_03769 0.66 +0.2 13,137 - MPMX19_03769 0.66 +1.7 13,183 + MPMX19_03769 0.71 -0.6 13,184 - MPMX19_03769 0.71 -2.1 13,184 - MPMX19_03769 0.71 +0.0 13,184 - MPMX19_03769 0.71 +0.6
Or see this region's nucleotide sequence