Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03703

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03702 and MPMX19_03703 are separated by 136 nucleotidesMPMX19_03703 and MPMX19_03704 are separated by 58 nucleotides MPMX19_03702: MPMX19_03702 - Glutathione hydrolase-like YwrD proenzyme, at 1,141,251 to 1,142,846 _03702 MPMX19_03703: MPMX19_03703 - hypothetical protein, at 1,142,983 to 1,143,699 _03703 MPMX19_03704: MPMX19_03704 - hypothetical protein, at 1,143,758 to 1,144,621 _03704 Position (kb) 1142 1143 1144Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1142.139 kb on + strand, within MPMX19_03702at 1142.139 kb on + strand, within MPMX19_03702at 1142.139 kb on + strand, within MPMX19_03702at 1142.139 kb on + strand, within MPMX19_03702at 1142.140 kb on - strand, within MPMX19_03702at 1142.140 kb on - strand, within MPMX19_03702at 1142.207 kb on - strand, within MPMX19_03702at 1142.307 kb on + strand, within MPMX19_03702at 1142.307 kb on + strand, within MPMX19_03702at 1142.307 kb on + strand, within MPMX19_03702at 1142.307 kb on + strand, within MPMX19_03702at 1142.307 kb on + strand, within MPMX19_03702at 1142.307 kb on + strand, within MPMX19_03702at 1142.307 kb on + strand, within MPMX19_03702at 1142.307 kb on + strand, within MPMX19_03702at 1142.307 kb on + strand, within MPMX19_03702at 1142.308 kb on - strand, within MPMX19_03702at 1142.308 kb on - strand, within MPMX19_03702at 1142.308 kb on - strand, within MPMX19_03702at 1142.308 kb on - strand, within MPMX19_03702at 1142.308 kb on - strand, within MPMX19_03702at 1142.308 kb on - strand, within MPMX19_03702at 1142.308 kb on - strand, within MPMX19_03702at 1142.308 kb on - strand, within MPMX19_03702at 1142.308 kb on - strand, within MPMX19_03702at 1142.308 kb on - strand, within MPMX19_03702at 1142.308 kb on - strand, within MPMX19_03702at 1142.371 kb on - strand, within MPMX19_03702at 1142.525 kb on + strand, within MPMX19_03702at 1142.556 kb on + strand, within MPMX19_03702at 1142.556 kb on + strand, within MPMX19_03702at 1142.557 kb on - strand, within MPMX19_03702at 1142.557 kb on - strand, within MPMX19_03702at 1142.557 kb on - strand, within MPMX19_03702at 1142.841 kb on + strandat 1142.841 kb on + strandat 1142.841 kb on + strandat 1142.841 kb on + strandat 1142.842 kb on - strandat 1142.842 kb on - strandat 1142.907 kb on + strandat 1142.908 kb on - strandat 1143.217 kb on + strand, within MPMX19_03703at 1143.218 kb on - strand, within MPMX19_03703at 1143.218 kb on - strand, within MPMX19_03703at 1143.268 kb on + strand, within MPMX19_03703at 1143.268 kb on + strand, within MPMX19_03703at 1143.269 kb on - strand, within MPMX19_03703at 1143.269 kb on - strand, within MPMX19_03703at 1143.311 kb on + strand, within MPMX19_03703at 1143.311 kb on + strand, within MPMX19_03703at 1143.312 kb on - strand, within MPMX19_03703at 1143.312 kb on - strand, within MPMX19_03703at 1143.312 kb on - strand, within MPMX19_03703at 1143.312 kb on - strand, within MPMX19_03703at 1143.439 kb on + strand, within MPMX19_03703at 1143.439 kb on + strand, within MPMX19_03703at 1143.439 kb on + strand, within MPMX19_03703at 1143.440 kb on - strand, within MPMX19_03703at 1143.440 kb on - strand, within MPMX19_03703at 1143.440 kb on - strand, within MPMX19_03703at 1143.440 kb on - strand, within MPMX19_03703at 1143.440 kb on - strand, within MPMX19_03703at 1143.505 kb on + strand, within MPMX19_03703at 1143.505 kb on + strand, within MPMX19_03703at 1143.506 kb on - strand, within MPMX19_03703at 1143.568 kb on + strand, within MPMX19_03703at 1143.568 kb on + strand, within MPMX19_03703at 1143.568 kb on + strand, within MPMX19_03703at 1143.568 kb on + strand, within MPMX19_03703at 1143.568 kb on + strand, within MPMX19_03703at 1143.569 kb on - strand, within MPMX19_03703at 1143.569 kb on - strand, within MPMX19_03703at 1143.569 kb on - strand, within MPMX19_03703at 1143.569 kb on - strand, within MPMX19_03703at 1143.569 kb on - strand, within MPMX19_03703at 1143.569 kb on - strand, within MPMX19_03703at 1143.569 kb on - strand, within MPMX19_03703at 1143.606 kb on + strand, within MPMX19_03703at 1143.606 kb on + strand, within MPMX19_03703at 1143.606 kb on + strand, within MPMX19_03703at 1143.606 kb on + strand, within MPMX19_03703at 1143.606 kb on + strand, within MPMX19_03703at 1143.607 kb on - strand, within MPMX19_03703at 1143.607 kb on - strand, within MPMX19_03703at 1143.607 kb on - strand, within MPMX19_03703at 1143.607 kb on - strand, within MPMX19_03703at 1143.607 kb on - strand, within MPMX19_03703at 1143.607 kb on - strand, within MPMX19_03703at 1143.607 kb on - strand, within MPMX19_03703at 1143.607 kb on - strand, within MPMX19_03703at 1144.150 kb on - strand, within MPMX19_03704at 1144.150 kb on - strand, within MPMX19_03704at 1144.150 kb on - strand, within MPMX19_03704at 1144.150 kb on - strand, within MPMX19_03704at 1144.154 kb on + strand, within MPMX19_03704at 1144.154 kb on + strand, within MPMX19_03704at 1144.154 kb on + strand, within MPMX19_03704at 1144.154 kb on + strand, within MPMX19_03704at 1144.154 kb on + strand, within MPMX19_03704at 1144.154 kb on + strand, within MPMX19_03704at 1144.154 kb on + strand, within MPMX19_03704at 1144.154 kb on + strand, within MPMX19_03704at 1144.154 kb on + strand, within MPMX19_03704at 1144.154 kb on + strand, within MPMX19_03704at 1144.154 kb on + strand, within MPMX19_03704at 1144.154 kb on + strand, within MPMX19_03704at 1144.154 kb on + strand, within MPMX19_03704at 1144.154 kb on + strand, within MPMX19_03704at 1144.154 kb on + strand, within MPMX19_03704at 1144.154 kb on + strand, within MPMX19_03704at 1144.154 kb on + strand, within MPMX19_03704at 1144.154 kb on + strand, within MPMX19_03704at 1144.154 kb on + strand, within MPMX19_03704at 1144.154 kb on + strand, within MPMX19_03704at 1144.154 kb on + strand, within MPMX19_03704at 1144.154 kb on + strand, within MPMX19_03704at 1144.154 kb on + strand, within MPMX19_03704at 1144.154 kb on + strand, within MPMX19_03704at 1144.154 kb on + strand, within MPMX19_03704at 1144.154 kb on + strand, within MPMX19_03704at 1144.154 kb on + strand, within MPMX19_03704at 1144.154 kb on + strand, within MPMX19_03704at 1144.154 kb on + strand, within MPMX19_03704at 1144.154 kb on + strand, within MPMX19_03704at 1144.154 kb on + strand, within MPMX19_03704at 1144.154 kb on + strand, within MPMX19_03704at 1144.154 kb on + strand, within MPMX19_03704at 1144.155 kb on - strand, within MPMX19_03704at 1144.155 kb on - strand, within MPMX19_03704at 1144.155 kb on - strand, within MPMX19_03704at 1144.155 kb on - strand, within MPMX19_03704at 1144.155 kb on - strand, within MPMX19_03704at 1144.155 kb on - strand, within MPMX19_03704at 1144.155 kb on - strand, within MPMX19_03704at 1144.155 kb on - strand, within MPMX19_03704at 1144.155 kb on - strand, within MPMX19_03704at 1144.155 kb on - strand, within MPMX19_03704at 1144.155 kb on - strand, within MPMX19_03704at 1144.155 kb on - strand, within MPMX19_03704at 1144.155 kb on - strand, within MPMX19_03704at 1144.155 kb on - strand, within MPMX19_03704at 1144.155 kb on - strand, within MPMX19_03704at 1144.155 kb on - strand, within MPMX19_03704at 1144.155 kb on - strand, within MPMX19_03704at 1144.155 kb on - strand, within MPMX19_03704at 1144.155 kb on - strand, within MPMX19_03704at 1144.155 kb on - strand, within MPMX19_03704at 1144.155 kb on - strand, within MPMX19_03704at 1144.155 kb on - strand, within MPMX19_03704at 1144.155 kb on - strand, within MPMX19_03704at 1144.155 kb on - strand, within MPMX19_03704at 1144.157 kb on + strand, within MPMX19_03704at 1144.157 kb on + strand, within MPMX19_03704at 1144.157 kb on + strand, within MPMX19_03704at 1144.157 kb on + strand, within MPMX19_03704at 1144.157 kb on + strand, within MPMX19_03704at 1144.157 kb on + strand, within MPMX19_03704at 1144.158 kb on - strand, within MPMX19_03704at 1144.158 kb on - strand, within MPMX19_03704at 1144.158 kb on - strand, within MPMX19_03704at 1144.158 kb on - strand, within MPMX19_03704at 1144.158 kb on - strand, within MPMX19_03704at 1144.158 kb on - strand, within MPMX19_03704at 1144.158 kb on - strand, within MPMX19_03704at 1144.158 kb on - strand, within MPMX19_03704at 1144.520 kb on + strand, within MPMX19_03704at 1144.520 kb on + strand, within MPMX19_03704at 1144.521 kb on - strand, within MPMX19_03704at 1144.556 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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1,142,139 + MPMX19_03702 0.56 -0.5
1,142,139 + MPMX19_03702 0.56 +0.1
1,142,139 + MPMX19_03702 0.56 -0.8
1,142,139 + MPMX19_03702 0.56 +0.2
1,142,140 - MPMX19_03702 0.56 +1.0
1,142,140 - MPMX19_03702 0.56 -0.4
1,142,207 - MPMX19_03702 0.60 -1.2
1,142,307 + MPMX19_03702 0.66 -0.1
1,142,307 + MPMX19_03702 0.66 -0.8
1,142,307 + MPMX19_03702 0.66 +0.4
1,142,307 + MPMX19_03702 0.66 +0.6
1,142,307 + MPMX19_03702 0.66 +2.2
1,142,307 + MPMX19_03702 0.66 -1.0
1,142,307 + MPMX19_03702 0.66 -0.5
1,142,307 + MPMX19_03702 0.66 -0.0
1,142,307 + MPMX19_03702 0.66 -0.2
1,142,308 - MPMX19_03702 0.66 -0.7
1,142,308 - MPMX19_03702 0.66 -0.1
1,142,308 - MPMX19_03702 0.66 -1.2
1,142,308 - MPMX19_03702 0.66 -0.0
1,142,308 - MPMX19_03702 0.66 -0.2
1,142,308 - MPMX19_03702 0.66 -0.4
1,142,308 - MPMX19_03702 0.66 +0.1
1,142,308 - MPMX19_03702 0.66 -0.2
1,142,308 - MPMX19_03702 0.66 +0.8
1,142,308 - MPMX19_03702 0.66 -0.4
1,142,308 - MPMX19_03702 0.66 -0.0
1,142,371 - MPMX19_03702 0.70 -1.6
1,142,525 + MPMX19_03702 0.80 -0.4
1,142,556 + MPMX19_03702 0.82 -0.3
1,142,556 + MPMX19_03702 0.82 -0.7
1,142,557 - MPMX19_03702 0.82 -1.3
1,142,557 - MPMX19_03702 0.82 +0.7
1,142,557 - MPMX19_03702 0.82 +1.2
1,142,841 + -0.4
1,142,841 + -1.2
1,142,841 + +0.2
1,142,841 + -1.9
1,142,842 - +1.6
1,142,842 - -2.0
1,142,907 + -1.0
1,142,908 - +0.2
1,143,217 + MPMX19_03703 0.33 +0.1
1,143,218 - MPMX19_03703 0.33 -1.4
1,143,218 - MPMX19_03703 0.33 -0.0
1,143,268 + MPMX19_03703 0.40 -0.4
1,143,268 + MPMX19_03703 0.40 +2.3
1,143,269 - MPMX19_03703 0.40 +0.1
1,143,269 - MPMX19_03703 0.40 -2.2
1,143,311 + MPMX19_03703 0.46 +0.8
1,143,311 + MPMX19_03703 0.46 -0.4
1,143,312 - MPMX19_03703 0.46 -0.3
1,143,312 - MPMX19_03703 0.46 -1.2
1,143,312 - MPMX19_03703 0.46 -0.0
1,143,312 - MPMX19_03703 0.46 -0.2
1,143,439 + MPMX19_03703 0.64 -0.0
1,143,439 + MPMX19_03703 0.64 -0.9
1,143,439 + MPMX19_03703 0.64 -0.6
1,143,440 - MPMX19_03703 0.64 -0.9
1,143,440 - MPMX19_03703 0.64 -0.0
1,143,440 - MPMX19_03703 0.64 -0.1
1,143,440 - MPMX19_03703 0.64 +0.3
1,143,440 - MPMX19_03703 0.64 +0.2
1,143,505 + MPMX19_03703 0.73 -2.1
1,143,505 + MPMX19_03703 0.73 -1.5
1,143,506 - MPMX19_03703 0.73 -2.9
1,143,568 + MPMX19_03703 0.82 -0.2
1,143,568 + MPMX19_03703 0.82 +0.7
1,143,568 + MPMX19_03703 0.82 -0.2
1,143,568 + MPMX19_03703 0.82 -1.4
1,143,568 + MPMX19_03703 0.82 +0.2
1,143,569 - MPMX19_03703 0.82 +1.9
1,143,569 - MPMX19_03703 0.82 -1.8
1,143,569 - MPMX19_03703 0.82 -0.8
1,143,569 - MPMX19_03703 0.82 -0.7
1,143,569 - MPMX19_03703 0.82 +0.4
1,143,569 - MPMX19_03703 0.82 -1.3
1,143,569 - MPMX19_03703 0.82 -2.0
1,143,606 + MPMX19_03703 0.87 -0.0
1,143,606 + MPMX19_03703 0.87 -0.1
1,143,606 + MPMX19_03703 0.87 +0.6
1,143,606 + MPMX19_03703 0.87 +2.2
1,143,606 + MPMX19_03703 0.87 +0.6
1,143,607 - MPMX19_03703 0.87 -1.9
1,143,607 - MPMX19_03703 0.87 -2.0
1,143,607 - MPMX19_03703 0.87 -0.8
1,143,607 - MPMX19_03703 0.87 +0.5
1,143,607 - MPMX19_03703 0.87 -1.1
1,143,607 - MPMX19_03703 0.87 -1.8
1,143,607 - MPMX19_03703 0.87 +1.6
1,143,607 - MPMX19_03703 0.87 -0.8
1,144,150 - MPMX19_03704 0.45 -0.2
1,144,150 - MPMX19_03704 0.45 -0.0
1,144,150 - MPMX19_03704 0.45 -1.2
1,144,150 - MPMX19_03704 0.45 -0.5
1,144,154 + MPMX19_03704 0.46 -0.0
1,144,154 + MPMX19_03704 0.46 -0.0
1,144,154 + MPMX19_03704 0.46 +2.2
1,144,154 + MPMX19_03704 0.46 +0.2
1,144,154 + MPMX19_03704 0.46 -0.8
1,144,154 + MPMX19_03704 0.46 -2.9
1,144,154 + MPMX19_03704 0.46 +0.6
1,144,154 + MPMX19_03704 0.46 +1.4
1,144,154 + MPMX19_03704 0.46 +0.2
1,144,154 + MPMX19_03704 0.46 -2.8
1,144,154 + MPMX19_03704 0.46 -0.2
1,144,154 + MPMX19_03704 0.46 -0.4
1,144,154 + MPMX19_03704 0.46 -0.8
1,144,154 + MPMX19_03704 0.46 -0.8
1,144,154 + MPMX19_03704 0.46 +0.6
1,144,154 + MPMX19_03704 0.46 -1.1
1,144,154 + MPMX19_03704 0.46 -0.0
1,144,154 + MPMX19_03704 0.46 +0.6
1,144,154 + MPMX19_03704 0.46 +0.1
1,144,154 + MPMX19_03704 0.46 -1.1
1,144,154 + MPMX19_03704 0.46 -1.2
1,144,154 + MPMX19_03704 0.46 -0.9
1,144,154 + MPMX19_03704 0.46 +0.3
1,144,154 + MPMX19_03704 0.46 -0.9
1,144,154 + MPMX19_03704 0.46 +1.6
1,144,154 + MPMX19_03704 0.46 -0.9
1,144,154 + MPMX19_03704 0.46 -0.6
1,144,154 + MPMX19_03704 0.46 +1.8
1,144,154 + MPMX19_03704 0.46 -0.8
1,144,154 + MPMX19_03704 0.46 +0.5
1,144,154 + MPMX19_03704 0.46 -1.4
1,144,154 + MPMX19_03704 0.46 -0.6
1,144,154 + MPMX19_03704 0.46 -2.0
1,144,155 - MPMX19_03704 0.46 -0.3
1,144,155 - MPMX19_03704 0.46 -0.3
1,144,155 - MPMX19_03704 0.46 -0.8
1,144,155 - MPMX19_03704 0.46 -0.8
1,144,155 - MPMX19_03704 0.46 -2.1
1,144,155 - MPMX19_03704 0.46 +0.2
1,144,155 - MPMX19_03704 0.46 -0.3
1,144,155 - MPMX19_03704 0.46 -0.1
1,144,155 - MPMX19_03704 0.46 -0.4
1,144,155 - MPMX19_03704 0.46 +0.6
1,144,155 - MPMX19_03704 0.46 +0.4
1,144,155 - MPMX19_03704 0.46 +0.6
1,144,155 - MPMX19_03704 0.46 -1.1
1,144,155 - MPMX19_03704 0.46 -1.2
1,144,155 - MPMX19_03704 0.46 -1.9
1,144,155 - MPMX19_03704 0.46 -1.3
1,144,155 - MPMX19_03704 0.46 -0.2
1,144,155 - MPMX19_03704 0.46 -0.2
1,144,155 - MPMX19_03704 0.46 +0.1
1,144,155 - MPMX19_03704 0.46 -0.7
1,144,155 - MPMX19_03704 0.46 -2.0
1,144,155 - MPMX19_03704 0.46 -0.2
1,144,155 - MPMX19_03704 0.46 -2.4
1,144,155 - MPMX19_03704 0.46 -0.1
1,144,157 + MPMX19_03704 0.46 +0.7
1,144,157 + MPMX19_03704 0.46 -0.3
1,144,157 + MPMX19_03704 0.46 -0.9
1,144,157 + MPMX19_03704 0.46 -1.2
1,144,157 + MPMX19_03704 0.46 +1.0
1,144,157 + MPMX19_03704 0.46 -1.3
1,144,158 - MPMX19_03704 0.46 +0.8
1,144,158 - MPMX19_03704 0.46 -0.8
1,144,158 - MPMX19_03704 0.46 -0.6
1,144,158 - MPMX19_03704 0.46 -2.1
1,144,158 - MPMX19_03704 0.46 +2.0
1,144,158 - MPMX19_03704 0.46 +0.2
1,144,158 - MPMX19_03704 0.46 -0.4
1,144,158 - MPMX19_03704 0.46 -0.2
1,144,520 + MPMX19_03704 0.88 -0.2
1,144,520 + MPMX19_03704 0.88 -0.6
1,144,521 - MPMX19_03704 0.88 -1.5
1,144,556 + -0.4

Or see this region's nucleotide sequence