Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03687

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03686 and MPMX19_03687 are separated by 478 nucleotidesMPMX19_03687 and MPMX19_03688 overlap by 4 nucleotidesMPMX19_03688 and MPMX19_03689 are separated by 6 nucleotides MPMX19_03686: MPMX19_03686 - Quinoprotein alcohol dehydrogenase (cytochrome c), at 1,125,311 to 1,127,227 _03686 MPMX19_03687: MPMX19_03687 - hypothetical protein, at 1,127,706 to 1,129,040 _03687 MPMX19_03688: MPMX19_03688 - Response regulator UvrY, at 1,129,037 to 1,129,669 _03688 MPMX19_03689: MPMX19_03689 - Transcriptional regulator MntR, at 1,129,676 to 1,130,158 _03689 Position (kb) 1127 1128 1129 1130Strain fitness (log2 ratio) -3 -2 -1 0 1at 1126.738 kb on - strand, within MPMX19_03686at 1126.803 kb on + strand, within MPMX19_03686at 1126.803 kb on + strand, within MPMX19_03686at 1126.803 kb on + strand, within MPMX19_03686at 1126.803 kb on + strand, within MPMX19_03686at 1126.803 kb on + strand, within MPMX19_03686at 1126.803 kb on + strand, within MPMX19_03686at 1126.804 kb on - strand, within MPMX19_03686at 1126.804 kb on - strand, within MPMX19_03686at 1126.804 kb on - strand, within MPMX19_03686at 1126.804 kb on - strand, within MPMX19_03686at 1126.854 kb on + strand, within MPMX19_03686at 1126.854 kb on + strand, within MPMX19_03686at 1126.855 kb on - strand, within MPMX19_03686at 1126.855 kb on - strand, within MPMX19_03686at 1126.869 kb on + strand, within MPMX19_03686at 1126.869 kb on + strand, within MPMX19_03686at 1126.869 kb on + strand, within MPMX19_03686at 1126.869 kb on + strand, within MPMX19_03686at 1126.869 kb on + strand, within MPMX19_03686at 1126.869 kb on + strand, within MPMX19_03686at 1126.869 kb on + strand, within MPMX19_03686at 1126.869 kb on + strand, within MPMX19_03686at 1126.869 kb on + strand, within MPMX19_03686at 1126.869 kb on + strand, within MPMX19_03686at 1126.869 kb on + strand, within MPMX19_03686at 1126.869 kb on + strand, within MPMX19_03686at 1126.869 kb on + strand, within MPMX19_03686at 1126.869 kb on + strand, within MPMX19_03686at 1126.870 kb on - strand, within MPMX19_03686at 1126.870 kb on - strand, within MPMX19_03686at 1126.870 kb on - strand, within MPMX19_03686at 1126.870 kb on - strand, within MPMX19_03686at 1126.870 kb on - strand, within MPMX19_03686at 1126.870 kb on - strand, within MPMX19_03686at 1126.870 kb on - strand, within MPMX19_03686at 1126.870 kb on - strand, within MPMX19_03686at 1126.870 kb on - strand, within MPMX19_03686at 1126.870 kb on - strand, within MPMX19_03686at 1127.022 kb on + strand, within MPMX19_03686at 1127.022 kb on + strand, within MPMX19_03686at 1127.022 kb on + strand, within MPMX19_03686at 1127.022 kb on + strand, within MPMX19_03686at 1127.022 kb on + strand, within MPMX19_03686at 1127.022 kb on + strand, within MPMX19_03686at 1127.022 kb on + strand, within MPMX19_03686at 1127.022 kb on + strand, within MPMX19_03686at 1127.022 kb on + strand, within MPMX19_03686at 1127.022 kb on + strand, within MPMX19_03686at 1127.022 kb on + strand, within MPMX19_03686at 1127.022 kb on + strand, within MPMX19_03686at 1127.022 kb on + strand, within MPMX19_03686at 1127.022 kb on + strand, within MPMX19_03686at 1127.023 kb on - strand, within MPMX19_03686at 1127.023 kb on - strand, within MPMX19_03686at 1127.023 kb on - strand, within MPMX19_03686at 1127.023 kb on - strand, within MPMX19_03686at 1127.023 kb on - strand, within MPMX19_03686at 1127.211 kb on + strandat 1127.211 kb on + strandat 1127.211 kb on + strandat 1127.212 kb on - strandat 1127.212 kb on - strandat 1127.212 kb on - strandat 1127.480 kb on + strandat 1127.481 kb on - strandat 1127.481 kb on - strandat 1127.592 kb on - strandat 1127.592 kb on - strandat 1127.687 kb on + strandat 1128.150 kb on + strand, within MPMX19_03687at 1128.150 kb on + strand, within MPMX19_03687at 1128.150 kb on + strand, within MPMX19_03687at 1128.150 kb on + strand, within MPMX19_03687at 1128.150 kb on + strand, within MPMX19_03687at 1128.150 kb on + strand, within MPMX19_03687at 1128.150 kb on + strand, within MPMX19_03687at 1128.151 kb on - strand, within MPMX19_03687at 1128.225 kb on + strand, within MPMX19_03687at 1128.225 kb on + strand, within MPMX19_03687at 1128.225 kb on + strand, within MPMX19_03687at 1128.225 kb on + strand, within MPMX19_03687at 1128.225 kb on + strand, within MPMX19_03687at 1128.226 kb on - strand, within MPMX19_03687at 1128.226 kb on - strand, within MPMX19_03687at 1128.226 kb on - strand, within MPMX19_03687at 1128.226 kb on - strand, within MPMX19_03687at 1129.204 kb on + strand, within MPMX19_03688at 1129.204 kb on + strand, within MPMX19_03688at 1129.204 kb on + strand, within MPMX19_03688at 1129.204 kb on + strand, within MPMX19_03688at 1129.204 kb on + strand, within MPMX19_03688at 1129.204 kb on + strand, within MPMX19_03688at 1129.204 kb on + strand, within MPMX19_03688at 1129.204 kb on + strand, within MPMX19_03688at 1129.205 kb on - strand, within MPMX19_03688at 1129.340 kb on + strand, within MPMX19_03688at 1129.340 kb on + strand, within MPMX19_03688at 1129.340 kb on + strand, within MPMX19_03688at 1129.340 kb on + strand, within MPMX19_03688at 1129.341 kb on - strand, within MPMX19_03688at 1129.341 kb on - strand, within MPMX19_03688at 1129.341 kb on - strand, within MPMX19_03688at 1129.884 kb on + strand, within MPMX19_03689at 1129.884 kb on + strand, within MPMX19_03689at 1129.884 kb on + strand, within MPMX19_03689at 1130.016 kb on + strand, within MPMX19_03689at 1130.016 kb on + strand, within MPMX19_03689at 1130.016 kb on + strand, within MPMX19_03689at 1130.016 kb on + strand, within MPMX19_03689at 1130.016 kb on + strand, within MPMX19_03689at 1130.016 kb on + strand, within MPMX19_03689at 1130.016 kb on + strand, within MPMX19_03689at 1130.016 kb on + strand, within MPMX19_03689at 1130.016 kb on + strand, within MPMX19_03689at 1130.016 kb on + strand, within MPMX19_03689at 1130.017 kb on - strand, within MPMX19_03689at 1130.017 kb on - strand, within MPMX19_03689at 1130.017 kb on - strand, within MPMX19_03689at 1130.017 kb on - strand, within MPMX19_03689at 1130.017 kb on - strand, within MPMX19_03689at 1130.017 kb on - strand, within MPMX19_03689at 1130.017 kb on - strand, within MPMX19_03689at 1130.017 kb on - strand, within MPMX19_03689at 1130.017 kb on - strand, within MPMX19_03689at 1130.017 kb on - strand, within MPMX19_03689at 1130.017 kb on - strand, within MPMX19_03689at 1130.017 kb on - strand, within MPMX19_03689

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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1,126,738 - MPMX19_03686 0.74 +0.2
1,126,803 + MPMX19_03686 0.78 +0.2
1,126,803 + MPMX19_03686 0.78 +0.2
1,126,803 + MPMX19_03686 0.78 +0.1
1,126,803 + MPMX19_03686 0.78 -0.3
1,126,803 + MPMX19_03686 0.78 -1.4
1,126,803 + MPMX19_03686 0.78 +0.1
1,126,804 - MPMX19_03686 0.78 +0.2
1,126,804 - MPMX19_03686 0.78 -0.0
1,126,804 - MPMX19_03686 0.78 +0.4
1,126,804 - MPMX19_03686 0.78 -2.8
1,126,854 + MPMX19_03686 0.80 -0.3
1,126,854 + MPMX19_03686 0.80 -0.6
1,126,855 - MPMX19_03686 0.81 -0.2
1,126,855 - MPMX19_03686 0.81 +0.2
1,126,869 + MPMX19_03686 0.81 -1.9
1,126,869 + MPMX19_03686 0.81 -0.9
1,126,869 + MPMX19_03686 0.81 -0.9
1,126,869 + MPMX19_03686 0.81 -0.0
1,126,869 + MPMX19_03686 0.81 -0.4
1,126,869 + MPMX19_03686 0.81 -0.5
1,126,869 + MPMX19_03686 0.81 -1.6
1,126,869 + MPMX19_03686 0.81 -0.5
1,126,869 + MPMX19_03686 0.81 -1.6
1,126,869 + MPMX19_03686 0.81 -0.3
1,126,869 + MPMX19_03686 0.81 -0.1
1,126,869 + MPMX19_03686 0.81 +1.4
1,126,869 + MPMX19_03686 0.81 -0.0
1,126,869 + MPMX19_03686 0.81 -1.0
1,126,870 - MPMX19_03686 0.81 -0.5
1,126,870 - MPMX19_03686 0.81 +1.3
1,126,870 - MPMX19_03686 0.81 +0.6
1,126,870 - MPMX19_03686 0.81 -0.6
1,126,870 - MPMX19_03686 0.81 +1.4
1,126,870 - MPMX19_03686 0.81 -0.8
1,126,870 - MPMX19_03686 0.81 -0.6
1,126,870 - MPMX19_03686 0.81 +0.0
1,126,870 - MPMX19_03686 0.81 -0.2
1,126,870 - MPMX19_03686 0.81 -0.4
1,127,022 + MPMX19_03686 0.89 -2.3
1,127,022 + MPMX19_03686 0.89 -0.0
1,127,022 + MPMX19_03686 0.89 -0.2
1,127,022 + MPMX19_03686 0.89 -1.8
1,127,022 + MPMX19_03686 0.89 -0.4
1,127,022 + MPMX19_03686 0.89 +0.2
1,127,022 + MPMX19_03686 0.89 -1.2
1,127,022 + MPMX19_03686 0.89 +0.6
1,127,022 + MPMX19_03686 0.89 -1.4
1,127,022 + MPMX19_03686 0.89 -1.3
1,127,022 + MPMX19_03686 0.89 -0.9
1,127,022 + MPMX19_03686 0.89 -0.1
1,127,022 + MPMX19_03686 0.89 -0.8
1,127,022 + MPMX19_03686 0.89 -1.8
1,127,023 - MPMX19_03686 0.89 +0.3
1,127,023 - MPMX19_03686 0.89 +0.8
1,127,023 - MPMX19_03686 0.89 -0.6
1,127,023 - MPMX19_03686 0.89 -0.4
1,127,023 - MPMX19_03686 0.89 -0.8
1,127,211 + +0.4
1,127,211 + +0.6
1,127,211 + -2.2
1,127,212 - +0.7
1,127,212 - -0.0
1,127,212 - +1.3
1,127,480 + -1.8
1,127,481 - -0.7
1,127,481 - -0.2
1,127,592 - -0.2
1,127,592 - -0.5
1,127,687 + -1.8
1,128,150 + MPMX19_03687 0.33 +0.3
1,128,150 + MPMX19_03687 0.33 -0.5
1,128,150 + MPMX19_03687 0.33 -1.6
1,128,150 + MPMX19_03687 0.33 +0.7
1,128,150 + MPMX19_03687 0.33 -0.1
1,128,150 + MPMX19_03687 0.33 -0.0
1,128,150 + MPMX19_03687 0.33 +0.4
1,128,151 - MPMX19_03687 0.33 -0.0
1,128,225 + MPMX19_03687 0.39 -0.9
1,128,225 + MPMX19_03687 0.39 -2.1
1,128,225 + MPMX19_03687 0.39 -0.8
1,128,225 + MPMX19_03687 0.39 -1.1
1,128,225 + MPMX19_03687 0.39 -1.1
1,128,226 - MPMX19_03687 0.39 -0.8
1,128,226 - MPMX19_03687 0.39 -3.0
1,128,226 - MPMX19_03687 0.39 -1.0
1,128,226 - MPMX19_03687 0.39 -0.5
1,129,204 + MPMX19_03688 0.26 +0.2
1,129,204 + MPMX19_03688 0.26 -1.4
1,129,204 + MPMX19_03688 0.26 +1.3
1,129,204 + MPMX19_03688 0.26 -2.0
1,129,204 + MPMX19_03688 0.26 -0.6
1,129,204 + MPMX19_03688 0.26 +0.4
1,129,204 + MPMX19_03688 0.26 -0.5
1,129,204 + MPMX19_03688 0.26 +1.4
1,129,205 - MPMX19_03688 0.27 -1.2
1,129,340 + MPMX19_03688 0.48 -1.6
1,129,340 + MPMX19_03688 0.48 -1.2
1,129,340 + MPMX19_03688 0.48 -1.0
1,129,340 + MPMX19_03688 0.48 -0.8
1,129,341 - MPMX19_03688 0.48 -1.8
1,129,341 - MPMX19_03688 0.48 +0.3
1,129,341 - MPMX19_03688 0.48 -1.2
1,129,884 + MPMX19_03689 0.43 -0.3
1,129,884 + MPMX19_03689 0.43 +0.2
1,129,884 + MPMX19_03689 0.43 -0.0
1,130,016 + MPMX19_03689 0.70 +0.3
1,130,016 + MPMX19_03689 0.70 -1.9
1,130,016 + MPMX19_03689 0.70 +0.2
1,130,016 + MPMX19_03689 0.70 +1.2
1,130,016 + MPMX19_03689 0.70 -0.6
1,130,016 + MPMX19_03689 0.70 +0.8
1,130,016 + MPMX19_03689 0.70 +1.0
1,130,016 + MPMX19_03689 0.70 -0.3
1,130,016 + MPMX19_03689 0.70 -0.9
1,130,016 + MPMX19_03689 0.70 +1.6
1,130,017 - MPMX19_03689 0.71 -0.1
1,130,017 - MPMX19_03689 0.71 -1.1
1,130,017 - MPMX19_03689 0.71 -0.0
1,130,017 - MPMX19_03689 0.71 -1.6
1,130,017 - MPMX19_03689 0.71 -0.2
1,130,017 - MPMX19_03689 0.71 -0.9
1,130,017 - MPMX19_03689 0.71 -0.0
1,130,017 - MPMX19_03689 0.71 -1.8
1,130,017 - MPMX19_03689 0.71 -0.4
1,130,017 - MPMX19_03689 0.71 -0.1
1,130,017 - MPMX19_03689 0.71 -0.9
1,130,017 - MPMX19_03689 0.71 -1.3

Or see this region's nucleotide sequence