Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03578

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03577 and MPMX19_03578 are separated by 92 nucleotidesMPMX19_03578 and MPMX19_03579 are separated by 7 nucleotides MPMX19_03577: MPMX19_03577 - Pyridoxine 4-dehydrogenase, at 998,489 to 999,379 _03577 MPMX19_03578: MPMX19_03578 - HTH-type transcriptional regulator PgrR, at 999,472 to 1,000,377 _03578 MPMX19_03579: MPMX19_03579 - Sensor histidine kinase RcsC, at 1,000,385 to 1,002,022 _03579 Position (kb) 999 1000 1001Strain fitness (log2 ratio) -2 -1 0 1 2at 998.736 kb on + strand, within MPMX19_03577at 998.736 kb on + strand, within MPMX19_03577at 998.736 kb on + strand, within MPMX19_03577at 998.736 kb on + strand, within MPMX19_03577at 998.737 kb on - strand, within MPMX19_03577at 998.737 kb on - strand, within MPMX19_03577at 998.737 kb on - strand, within MPMX19_03577at 998.737 kb on - strand, within MPMX19_03577at 998.737 kb on - strand, within MPMX19_03577at 998.737 kb on - strand, within MPMX19_03577at 998.737 kb on - strand, within MPMX19_03577at 998.737 kb on - strand, within MPMX19_03577at 998.737 kb on - strand, within MPMX19_03577at 998.737 kb on - strand, within MPMX19_03577at 998.737 kb on - strand, within MPMX19_03577at 998.737 kb on - strand, within MPMX19_03577at 998.737 kb on - strand, within MPMX19_03577at 998.799 kb on + strand, within MPMX19_03577at 998.799 kb on + strand, within MPMX19_03577at 998.799 kb on + strand, within MPMX19_03577at 998.800 kb on - strand, within MPMX19_03577at 998.800 kb on - strand, within MPMX19_03577at 998.800 kb on - strand, within MPMX19_03577at 998.980 kb on + strand, within MPMX19_03577at 998.980 kb on + strand, within MPMX19_03577at 998.980 kb on + strand, within MPMX19_03577at 998.980 kb on + strand, within MPMX19_03577at 998.980 kb on + strand, within MPMX19_03577at 998.981 kb on - strand, within MPMX19_03577at 998.981 kb on - strand, within MPMX19_03577at 999.177 kb on + strand, within MPMX19_03577at 999.177 kb on + strand, within MPMX19_03577at 999.177 kb on + strand, within MPMX19_03577at 999.178 kb on - strand, within MPMX19_03577at 999.178 kb on - strand, within MPMX19_03577at 999.178 kb on - strand, within MPMX19_03577at 999.178 kb on - strand, within MPMX19_03577at 999.178 kb on - strand, within MPMX19_03577at 999.178 kb on - strand, within MPMX19_03577at 999.178 kb on - strand, within MPMX19_03577at 999.178 kb on - strand, within MPMX19_03577at 999.391 kb on + strandat 999.392 kb on - strandat 999.408 kb on + strandat 999.408 kb on + strandat 999.408 kb on + strandat 999.408 kb on + strandat 999.408 kb on + strandat 999.408 kb on + strandat 999.409 kb on - strandat 999.409 kb on - strandat 999.409 kb on - strandat 999.409 kb on - strandat 999.431 kb on + strandat 999.432 kb on - strandat 999.432 kb on - strandat 999.827 kb on - strand, within MPMX19_03578at 999.907 kb on + strand, within MPMX19_03578at 999.991 kb on + strand, within MPMX19_03578at 999.991 kb on + strand, within MPMX19_03578at 999.992 kb on - strand, within MPMX19_03578at 999.992 kb on - strand, within MPMX19_03578at 999.992 kb on - strand, within MPMX19_03578at 1000.223 kb on + strand, within MPMX19_03578at 1000.223 kb on + strand, within MPMX19_03578at 1000.224 kb on - strand, within MPMX19_03578at 1000.300 kb on + strandat 1000.300 kb on + strandat 1000.301 kb on - strandat 1000.303 kb on + strandat 1000.477 kb on + strandat 1000.477 kb on + strandat 1000.477 kb on + strandat 1000.485 kb on + strandat 1000.800 kb on + strand, within MPMX19_03579at 1000.800 kb on + strand, within MPMX19_03579at 1000.800 kb on + strand, within MPMX19_03579at 1000.801 kb on - strand, within MPMX19_03579at 1000.801 kb on - strand, within MPMX19_03579at 1000.801 kb on - strand, within MPMX19_03579at 1000.831 kb on + strand, within MPMX19_03579at 1000.831 kb on + strand, within MPMX19_03579at 1000.832 kb on - strand, within MPMX19_03579at 1000.832 kb on - strand, within MPMX19_03579at 1000.924 kb on + strand, within MPMX19_03579at 1001.001 kb on + strand, within MPMX19_03579at 1001.001 kb on + strand, within MPMX19_03579at 1001.001 kb on + strand, within MPMX19_03579at 1001.001 kb on + strand, within MPMX19_03579at 1001.001 kb on + strand, within MPMX19_03579at 1001.001 kb on + strand, within MPMX19_03579at 1001.001 kb on + strand, within MPMX19_03579at 1001.001 kb on + strand, within MPMX19_03579at 1001.001 kb on + strand, within MPMX19_03579at 1001.001 kb on + strand, within MPMX19_03579at 1001.001 kb on + strand, within MPMX19_03579at 1001.001 kb on + strand, within MPMX19_03579at 1001.001 kb on + strand, within MPMX19_03579at 1001.001 kb on + strand, within MPMX19_03579at 1001.001 kb on + strand, within MPMX19_03579at 1001.002 kb on - strand, within MPMX19_03579at 1001.002 kb on - strand, within MPMX19_03579at 1001.002 kb on - strand, within MPMX19_03579at 1001.002 kb on - strand, within MPMX19_03579at 1001.002 kb on - strand, within MPMX19_03579at 1001.002 kb on - strand, within MPMX19_03579at 1001.002 kb on - strand, within MPMX19_03579at 1001.002 kb on - strand, within MPMX19_03579at 1001.002 kb on - strand, within MPMX19_03579at 1001.002 kb on - strand, within MPMX19_03579at 1001.002 kb on - strand, within MPMX19_03579

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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998,736 + MPMX19_03577 0.28 -0.4
998,736 + MPMX19_03577 0.28 -0.1
998,736 + MPMX19_03577 0.28 +1.0
998,736 + MPMX19_03577 0.28 -1.2
998,737 - MPMX19_03577 0.28 +1.8
998,737 - MPMX19_03577 0.28 -2.7
998,737 - MPMX19_03577 0.28 -0.8
998,737 - MPMX19_03577 0.28 +0.3
998,737 - MPMX19_03577 0.28 +0.9
998,737 - MPMX19_03577 0.28 +0.1
998,737 - MPMX19_03577 0.28 -1.0
998,737 - MPMX19_03577 0.28 -0.0
998,737 - MPMX19_03577 0.28 -0.2
998,737 - MPMX19_03577 0.28 +0.9
998,737 - MPMX19_03577 0.28 -0.7
998,737 - MPMX19_03577 0.28 +0.6
998,737 - MPMX19_03577 0.28 -1.0
998,799 + MPMX19_03577 0.35 -0.9
998,799 + MPMX19_03577 0.35 -1.0
998,799 + MPMX19_03577 0.35 -0.9
998,800 - MPMX19_03577 0.35 -1.0
998,800 - MPMX19_03577 0.35 +0.2
998,800 - MPMX19_03577 0.35 -1.6
998,980 + MPMX19_03577 0.55 -1.4
998,980 + MPMX19_03577 0.55 +0.7
998,980 + MPMX19_03577 0.55 -0.0
998,980 + MPMX19_03577 0.55 -0.1
998,980 + MPMX19_03577 0.55 -0.4
998,981 - MPMX19_03577 0.55 -0.6
998,981 - MPMX19_03577 0.55 +0.4
999,177 + MPMX19_03577 0.77 -0.4
999,177 + MPMX19_03577 0.77 -0.1
999,177 + MPMX19_03577 0.77 +0.6
999,178 - MPMX19_03577 0.77 -0.7
999,178 - MPMX19_03577 0.77 +0.5
999,178 - MPMX19_03577 0.77 -1.1
999,178 - MPMX19_03577 0.77 -0.4
999,178 - MPMX19_03577 0.77 -0.4
999,178 - MPMX19_03577 0.77 -0.6
999,178 - MPMX19_03577 0.77 -1.5
999,178 - MPMX19_03577 0.77 -0.2
999,391 + -2.7
999,392 - -0.0
999,408 + -1.7
999,408 + -0.2
999,408 + +0.0
999,408 + -0.4
999,408 + +0.3
999,408 + -2.2
999,409 - +0.1
999,409 - -0.5
999,409 - -0.8
999,409 - -1.8
999,431 + -1.2
999,432 - -0.9
999,432 - -0.3
999,827 - MPMX19_03578 0.39 -0.2
999,907 + MPMX19_03578 0.48 +0.2
999,991 + MPMX19_03578 0.57 -1.9
999,991 + MPMX19_03578 0.57 -0.3
999,992 - MPMX19_03578 0.57 -0.4
999,992 - MPMX19_03578 0.57 -0.6
999,992 - MPMX19_03578 0.57 -0.7
1,000,223 + MPMX19_03578 0.83 -1.3
1,000,223 + MPMX19_03578 0.83 -2.0
1,000,224 - MPMX19_03578 0.83 -0.5
1,000,300 + -0.8
1,000,300 + -0.3
1,000,301 - +0.4
1,000,303 + -1.0
1,000,477 + -0.0
1,000,477 + +0.3
1,000,477 + -2.7
1,000,485 + -0.1
1,000,800 + MPMX19_03579 0.25 -0.3
1,000,800 + MPMX19_03579 0.25 -0.0
1,000,800 + MPMX19_03579 0.25 -0.6
1,000,801 - MPMX19_03579 0.25 -0.1
1,000,801 - MPMX19_03579 0.25 -1.0
1,000,801 - MPMX19_03579 0.25 +1.0
1,000,831 + MPMX19_03579 0.27 -1.6
1,000,831 + MPMX19_03579 0.27 -0.8
1,000,832 - MPMX19_03579 0.27 +1.0
1,000,832 - MPMX19_03579 0.27 +0.6
1,000,924 + MPMX19_03579 0.33 +0.1
1,001,001 + MPMX19_03579 0.38 -0.4
1,001,001 + MPMX19_03579 0.38 -0.4
1,001,001 + MPMX19_03579 0.38 +0.2
1,001,001 + MPMX19_03579 0.38 -1.0
1,001,001 + MPMX19_03579 0.38 -1.9
1,001,001 + MPMX19_03579 0.38 +0.7
1,001,001 + MPMX19_03579 0.38 +0.5
1,001,001 + MPMX19_03579 0.38 -0.0
1,001,001 + MPMX19_03579 0.38 -0.4
1,001,001 + MPMX19_03579 0.38 -1.4
1,001,001 + MPMX19_03579 0.38 -0.6
1,001,001 + MPMX19_03579 0.38 -1.1
1,001,001 + MPMX19_03579 0.38 +0.1
1,001,001 + MPMX19_03579 0.38 +0.1
1,001,001 + MPMX19_03579 0.38 -0.4
1,001,002 - MPMX19_03579 0.38 -1.0
1,001,002 - MPMX19_03579 0.38 -0.9
1,001,002 - MPMX19_03579 0.38 +1.1
1,001,002 - MPMX19_03579 0.38 -0.7
1,001,002 - MPMX19_03579 0.38 +0.6
1,001,002 - MPMX19_03579 0.38 -0.8
1,001,002 - MPMX19_03579 0.38 -2.1
1,001,002 - MPMX19_03579 0.38 +0.3
1,001,002 - MPMX19_03579 0.38 -2.1
1,001,002 - MPMX19_03579 0.38 -0.3
1,001,002 - MPMX19_03579 0.38 -0.4

Or see this region's nucleotide sequence