Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03568

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03566 and MPMX19_03567 are separated by 51 nucleotidesMPMX19_03567 and MPMX19_03568 are separated by 77 nucleotidesMPMX19_03568 and MPMX19_03569 are separated by 63 nucleotidesMPMX19_03569 and MPMX19_03570 are separated by 182 nucleotides MPMX19_03566: MPMX19_03566 - Lactoylglutathione lyase, at 987,900 to 988,295 _03566 MPMX19_03567: MPMX19_03567 - hypothetical protein, at 988,347 to 988,901 _03567 MPMX19_03568: MPMX19_03568 - 2-methyl-1,2-propanediol dehydrogenase, at 988,979 to 990,550 _03568 MPMX19_03569: MPMX19_03569 - hypothetical protein, at 990,614 to 991,249 _03569 MPMX19_03570: MPMX19_03570 - Phenoxybenzoate dioxygenase subunit beta, at 991,432 to 992,412 _03570 Position (kb) 988 989 990 991Strain fitness (log2 ratio) -2 -1 0 1at 988.023 kb on + strand, within MPMX19_03566at 988.023 kb on + strand, within MPMX19_03566at 988.023 kb on + strand, within MPMX19_03566at 988.024 kb on - strand, within MPMX19_03566at 988.024 kb on - strand, within MPMX19_03566at 988.089 kb on + strand, within MPMX19_03566at 988.089 kb on + strand, within MPMX19_03566at 988.089 kb on + strand, within MPMX19_03566at 988.089 kb on + strand, within MPMX19_03566at 988.089 kb on + strand, within MPMX19_03566at 988.090 kb on - strand, within MPMX19_03566at 988.254 kb on + strand, within MPMX19_03566at 988.254 kb on + strand, within MPMX19_03566at 988.254 kb on + strand, within MPMX19_03566at 988.255 kb on - strand, within MPMX19_03566at 988.255 kb on - strand, within MPMX19_03566at 988.255 kb on - strand, within MPMX19_03566at 988.293 kb on + strandat 988.318 kb on - strandat 988.540 kb on - strand, within MPMX19_03567at 988.540 kb on - strand, within MPMX19_03567at 988.566 kb on + strand, within MPMX19_03567at 988.566 kb on + strand, within MPMX19_03567at 988.567 kb on - strand, within MPMX19_03567at 988.567 kb on - strand, within MPMX19_03567at 988.567 kb on - strand, within MPMX19_03567at 988.567 kb on - strand, within MPMX19_03567at 988.567 kb on - strand, within MPMX19_03567at 988.569 kb on + strand, within MPMX19_03567at 988.569 kb on + strand, within MPMX19_03567at 988.569 kb on + strand, within MPMX19_03567at 988.569 kb on + strand, within MPMX19_03567at 988.570 kb on - strand, within MPMX19_03567at 988.570 kb on - strand, within MPMX19_03567at 988.689 kb on + strand, within MPMX19_03567at 988.689 kb on + strand, within MPMX19_03567at 988.689 kb on + strand, within MPMX19_03567at 988.689 kb on + strand, within MPMX19_03567at 988.689 kb on + strand, within MPMX19_03567at 988.689 kb on + strand, within MPMX19_03567at 988.689 kb on + strand, within MPMX19_03567at 988.689 kb on + strand, within MPMX19_03567at 988.690 kb on - strand, within MPMX19_03567at 988.690 kb on - strand, within MPMX19_03567at 988.690 kb on - strand, within MPMX19_03567at 988.791 kb on + strand, within MPMX19_03567at 988.791 kb on + strand, within MPMX19_03567at 988.792 kb on - strand, within MPMX19_03567at 988.792 kb on - strand, within MPMX19_03567at 988.825 kb on - strand, within MPMX19_03567at 988.845 kb on + strand, within MPMX19_03567at 988.854 kb on + strandat 988.854 kb on + strandat 988.854 kb on + strandat 988.855 kb on - strandat 988.855 kb on - strandat 988.855 kb on - strandat 989.321 kb on + strand, within MPMX19_03568at 989.321 kb on + strand, within MPMX19_03568at 989.321 kb on + strand, within MPMX19_03568at 989.321 kb on + strand, within MPMX19_03568at 989.322 kb on - strand, within MPMX19_03568at 989.322 kb on - strand, within MPMX19_03568at 989.384 kb on + strand, within MPMX19_03568at 989.384 kb on + strand, within MPMX19_03568at 989.384 kb on + strand, within MPMX19_03568at 989.385 kb on - strand, within MPMX19_03568at 989.385 kb on - strand, within MPMX19_03568at 989.388 kb on - strand, within MPMX19_03568at 989.388 kb on - strand, within MPMX19_03568at 989.388 kb on - strand, within MPMX19_03568at 989.388 kb on - strand, within MPMX19_03568at 989.459 kb on + strand, within MPMX19_03568at 989.459 kb on + strand, within MPMX19_03568at 989.459 kb on + strand, within MPMX19_03568at 989.459 kb on + strand, within MPMX19_03568at 989.459 kb on + strand, within MPMX19_03568at 989.459 kb on + strand, within MPMX19_03568at 989.459 kb on + strand, within MPMX19_03568at 989.460 kb on - strand, within MPMX19_03568at 989.460 kb on - strand, within MPMX19_03568at 989.460 kb on - strand, within MPMX19_03568at 989.460 kb on - strand, within MPMX19_03568at 989.460 kb on - strand, within MPMX19_03568at 989.460 kb on - strand, within MPMX19_03568at 989.460 kb on - strand, within MPMX19_03568at 989.460 kb on - strand, within MPMX19_03568at 989.460 kb on - strand, within MPMX19_03568at 989.496 kb on - strand, within MPMX19_03568at 989.618 kb on + strand, within MPMX19_03568at 989.618 kb on + strand, within MPMX19_03568at 989.618 kb on + strand, within MPMX19_03568at 989.618 kb on + strand, within MPMX19_03568at 989.619 kb on - strand, within MPMX19_03568at 989.619 kb on - strand, within MPMX19_03568at 989.726 kb on + strand, within MPMX19_03568at 989.726 kb on + strand, within MPMX19_03568at 989.726 kb on + strand, within MPMX19_03568at 989.726 kb on + strand, within MPMX19_03568at 989.727 kb on - strand, within MPMX19_03568at 989.727 kb on - strand, within MPMX19_03568at 989.727 kb on - strand, within MPMX19_03568at 989.879 kb on + strand, within MPMX19_03568at 989.879 kb on + strand, within MPMX19_03568at 989.879 kb on + strand, within MPMX19_03568at 989.879 kb on + strand, within MPMX19_03568at 989.879 kb on + strand, within MPMX19_03568at 989.879 kb on + strand, within MPMX19_03568at 989.880 kb on - strand, within MPMX19_03568at 989.880 kb on - strand, within MPMX19_03568at 989.880 kb on - strand, within MPMX19_03568at 989.880 kb on - strand, within MPMX19_03568at 989.880 kb on - strand, within MPMX19_03568at 989.880 kb on - strand, within MPMX19_03568at 989.880 kb on - strand, within MPMX19_03568at 989.906 kb on + strand, within MPMX19_03568at 989.936 kb on + strand, within MPMX19_03568at 989.936 kb on + strand, within MPMX19_03568at 989.936 kb on + strand, within MPMX19_03568at 989.936 kb on + strand, within MPMX19_03568at 989.936 kb on + strand, within MPMX19_03568at 989.936 kb on + strand, within MPMX19_03568at 989.937 kb on - strand, within MPMX19_03568at 989.937 kb on - strand, within MPMX19_03568at 989.937 kb on - strand, within MPMX19_03568at 989.937 kb on - strand, within MPMX19_03568at 989.937 kb on - strand, within MPMX19_03568at 989.937 kb on - strand, within MPMX19_03568at 989.937 kb on - strand, within MPMX19_03568at 989.937 kb on - strand, within MPMX19_03568at 989.937 kb on - strand, within MPMX19_03568at 989.937 kb on - strand, within MPMX19_03568at 990.012 kb on - strand, within MPMX19_03568at 990.107 kb on + strand, within MPMX19_03568at 990.108 kb on - strand, within MPMX19_03568at 990.108 kb on - strand, within MPMX19_03568at 990.108 kb on - strand, within MPMX19_03568at 990.108 kb on - strand, within MPMX19_03568at 990.266 kb on + strand, within MPMX19_03568at 990.266 kb on + strand, within MPMX19_03568at 990.266 kb on + strand, within MPMX19_03568at 990.267 kb on - strand, within MPMX19_03568at 990.267 kb on - strand, within MPMX19_03568at 990.287 kb on + strand, within MPMX19_03568at 990.287 kb on + strand, within MPMX19_03568at 990.287 kb on + strand, within MPMX19_03568at 990.287 kb on + strand, within MPMX19_03568at 990.287 kb on + strand, within MPMX19_03568at 990.287 kb on + strand, within MPMX19_03568at 990.288 kb on - strand, within MPMX19_03568at 990.288 kb on - strand, within MPMX19_03568at 990.288 kb on - strand, within MPMX19_03568at 990.329 kb on + strand, within MPMX19_03568at 990.515 kb on + strandat 990.515 kb on + strandat 990.515 kb on + strandat 990.515 kb on + strandat 990.515 kb on + strandat 990.516 kb on - strandat 990.516 kb on - strandat 990.643 kb on + strandat 990.732 kb on + strand, within MPMX19_03569at 990.732 kb on + strand, within MPMX19_03569at 990.732 kb on + strand, within MPMX19_03569at 990.732 kb on + strand, within MPMX19_03569at 990.733 kb on - strand, within MPMX19_03569at 990.750 kb on + strand, within MPMX19_03569at 990.750 kb on + strand, within MPMX19_03569at 990.751 kb on - strand, within MPMX19_03569at 990.795 kb on + strand, within MPMX19_03569at 990.795 kb on + strand, within MPMX19_03569at 990.795 kb on + strand, within MPMX19_03569at 990.795 kb on + strand, within MPMX19_03569at 990.795 kb on + strand, within MPMX19_03569at 990.796 kb on - strand, within MPMX19_03569at 990.796 kb on - strand, within MPMX19_03569at 990.796 kb on - strand, within MPMX19_03569at 991.440 kb on + strandat 991.440 kb on + strandat 991.440 kb on + strandat 991.441 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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988,023 + MPMX19_03566 0.31 -1.4
988,023 + MPMX19_03566 0.31 -0.1
988,023 + MPMX19_03566 0.31 -0.7
988,024 - MPMX19_03566 0.31 -1.1
988,024 - MPMX19_03566 0.31 -0.7
988,089 + MPMX19_03566 0.48 -1.4
988,089 + MPMX19_03566 0.48 +1.6
988,089 + MPMX19_03566 0.48 +0.2
988,089 + MPMX19_03566 0.48 -0.6
988,089 + MPMX19_03566 0.48 +0.5
988,090 - MPMX19_03566 0.48 +0.7
988,254 + MPMX19_03566 0.89 +0.9
988,254 + MPMX19_03566 0.89 -2.2
988,254 + MPMX19_03566 0.89 +0.3
988,255 - MPMX19_03566 0.90 -0.2
988,255 - MPMX19_03566 0.90 +0.2
988,255 - MPMX19_03566 0.90 -0.9
988,293 + -1.3
988,318 - -0.0
988,540 - MPMX19_03567 0.35 -0.4
988,540 - MPMX19_03567 0.35 -0.6
988,566 + MPMX19_03567 0.39 -1.0
988,566 + MPMX19_03567 0.39 -1.1
988,567 - MPMX19_03567 0.40 +1.3
988,567 - MPMX19_03567 0.40 -0.0
988,567 - MPMX19_03567 0.40 +0.8
988,567 - MPMX19_03567 0.40 -0.3
988,567 - MPMX19_03567 0.40 -0.0
988,569 + MPMX19_03567 0.40 -0.6
988,569 + MPMX19_03567 0.40 -0.9
988,569 + MPMX19_03567 0.40 +0.6
988,569 + MPMX19_03567 0.40 -1.4
988,570 - MPMX19_03567 0.40 -2.4
988,570 - MPMX19_03567 0.40 -0.4
988,689 + MPMX19_03567 0.62 -0.1
988,689 + MPMX19_03567 0.62 +0.6
988,689 + MPMX19_03567 0.62 +0.6
988,689 + MPMX19_03567 0.62 -2.4
988,689 + MPMX19_03567 0.62 +0.1
988,689 + MPMX19_03567 0.62 +0.1
988,689 + MPMX19_03567 0.62 -1.0
988,689 + MPMX19_03567 0.62 -0.2
988,690 - MPMX19_03567 0.62 -1.3
988,690 - MPMX19_03567 0.62 -1.4
988,690 - MPMX19_03567 0.62 -0.9
988,791 + MPMX19_03567 0.80 -1.6
988,791 + MPMX19_03567 0.80 -0.5
988,792 - MPMX19_03567 0.80 -0.7
988,792 - MPMX19_03567 0.80 -0.3
988,825 - MPMX19_03567 0.86 -2.0
988,845 + MPMX19_03567 0.90 +0.3
988,854 + -0.5
988,854 + -1.0
988,854 + +0.8
988,855 - -1.2
988,855 - -0.3
988,855 - -0.5
989,321 + MPMX19_03568 0.22 +0.8
989,321 + MPMX19_03568 0.22 -1.1
989,321 + MPMX19_03568 0.22 -0.3
989,321 + MPMX19_03568 0.22 +0.9
989,322 - MPMX19_03568 0.22 -1.6
989,322 - MPMX19_03568 0.22 -0.3
989,384 + MPMX19_03568 0.26 -2.0
989,384 + MPMX19_03568 0.26 +1.0
989,384 + MPMX19_03568 0.26 -1.0
989,385 - MPMX19_03568 0.26 -0.3
989,385 - MPMX19_03568 0.26 +0.4
989,388 - MPMX19_03568 0.26 -1.2
989,388 - MPMX19_03568 0.26 -0.0
989,388 - MPMX19_03568 0.26 -0.2
989,388 - MPMX19_03568 0.26 -0.4
989,459 + MPMX19_03568 0.31 -0.0
989,459 + MPMX19_03568 0.31 -1.4
989,459 + MPMX19_03568 0.31 +0.8
989,459 + MPMX19_03568 0.31 -0.0
989,459 + MPMX19_03568 0.31 -0.0
989,459 + MPMX19_03568 0.31 +0.8
989,459 + MPMX19_03568 0.31 -0.4
989,460 - MPMX19_03568 0.31 -0.3
989,460 - MPMX19_03568 0.31 +0.0
989,460 - MPMX19_03568 0.31 -0.2
989,460 - MPMX19_03568 0.31 -0.4
989,460 - MPMX19_03568 0.31 -0.6
989,460 - MPMX19_03568 0.31 -0.1
989,460 - MPMX19_03568 0.31 -0.8
989,460 - MPMX19_03568 0.31 -0.9
989,460 - MPMX19_03568 0.31 +0.2
989,496 - MPMX19_03568 0.33 -1.0
989,618 + MPMX19_03568 0.41 -0.9
989,618 + MPMX19_03568 0.41 -1.8
989,618 + MPMX19_03568 0.41 -0.2
989,618 + MPMX19_03568 0.41 +1.0
989,619 - MPMX19_03568 0.41 -0.4
989,619 - MPMX19_03568 0.41 -0.3
989,726 + MPMX19_03568 0.48 +1.0
989,726 + MPMX19_03568 0.48 -0.2
989,726 + MPMX19_03568 0.48 -0.8
989,726 + MPMX19_03568 0.48 +0.3
989,727 - MPMX19_03568 0.48 +1.1
989,727 - MPMX19_03568 0.48 +1.6
989,727 - MPMX19_03568 0.48 -0.1
989,879 + MPMX19_03568 0.57 +0.2
989,879 + MPMX19_03568 0.57 -0.8
989,879 + MPMX19_03568 0.57 -0.7
989,879 + MPMX19_03568 0.57 -1.3
989,879 + MPMX19_03568 0.57 -1.2
989,879 + MPMX19_03568 0.57 -0.2
989,880 - MPMX19_03568 0.57 +0.2
989,880 - MPMX19_03568 0.57 -0.6
989,880 - MPMX19_03568 0.57 +1.1
989,880 - MPMX19_03568 0.57 -0.6
989,880 - MPMX19_03568 0.57 -0.6
989,880 - MPMX19_03568 0.57 +1.0
989,880 - MPMX19_03568 0.57 -1.7
989,906 + MPMX19_03568 0.59 +0.4
989,936 + MPMX19_03568 0.61 +1.4
989,936 + MPMX19_03568 0.61 -1.6
989,936 + MPMX19_03568 0.61 -0.2
989,936 + MPMX19_03568 0.61 +0.3
989,936 + MPMX19_03568 0.61 -0.0
989,936 + MPMX19_03568 0.61 -0.2
989,937 - MPMX19_03568 0.61 +0.6
989,937 - MPMX19_03568 0.61 -1.4
989,937 - MPMX19_03568 0.61 +0.4
989,937 - MPMX19_03568 0.61 -0.4
989,937 - MPMX19_03568 0.61 -1.6
989,937 - MPMX19_03568 0.61 -0.6
989,937 - MPMX19_03568 0.61 +1.0
989,937 - MPMX19_03568 0.61 +0.7
989,937 - MPMX19_03568 0.61 -0.2
989,937 - MPMX19_03568 0.61 -0.9
990,012 - MPMX19_03568 0.66 -0.9
990,107 + MPMX19_03568 0.72 -1.2
990,108 - MPMX19_03568 0.72 -1.6
990,108 - MPMX19_03568 0.72 -0.6
990,108 - MPMX19_03568 0.72 -0.2
990,108 - MPMX19_03568 0.72 +0.1
990,266 + MPMX19_03568 0.82 +0.4
990,266 + MPMX19_03568 0.82 -1.0
990,266 + MPMX19_03568 0.82 -0.3
990,267 - MPMX19_03568 0.82 -0.1
990,267 - MPMX19_03568 0.82 -1.4
990,287 + MPMX19_03568 0.83 -1.2
990,287 + MPMX19_03568 0.83 -1.2
990,287 + MPMX19_03568 0.83 -1.4
990,287 + MPMX19_03568 0.83 +0.6
990,287 + MPMX19_03568 0.83 -0.9
990,287 + MPMX19_03568 0.83 +0.6
990,288 - MPMX19_03568 0.83 +0.2
990,288 - MPMX19_03568 0.83 +0.5
990,288 - MPMX19_03568 0.83 +0.2
990,329 + MPMX19_03568 0.86 -1.6
990,515 + -2.5
990,515 + -0.7
990,515 + -1.0
990,515 + -1.8
990,515 + -0.2
990,516 - -0.4
990,516 - +0.1
990,643 + -1.2
990,732 + MPMX19_03569 0.19 +1.0
990,732 + MPMX19_03569 0.19 -1.0
990,732 + MPMX19_03569 0.19 +0.6
990,732 + MPMX19_03569 0.19 -0.3
990,733 - MPMX19_03569 0.19 -1.4
990,750 + MPMX19_03569 0.21 -0.9
990,750 + MPMX19_03569 0.21 -1.2
990,751 - MPMX19_03569 0.22 -0.8
990,795 + MPMX19_03569 0.28 -0.8
990,795 + MPMX19_03569 0.28 +0.3
990,795 + MPMX19_03569 0.28 -0.7
990,795 + MPMX19_03569 0.28 -2.6
990,795 + MPMX19_03569 0.28 -1.6
990,796 - MPMX19_03569 0.29 +0.6
990,796 - MPMX19_03569 0.29 -0.3
990,796 - MPMX19_03569 0.29 -0.8
991,440 + -1.6
991,440 + -0.4
991,440 + +0.2
991,441 - -0.0

Or see this region's nucleotide sequence