Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03565

Experiment: NL-CCM, start OD=0.1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_03564 and MPMX19_03565 are separated by 525 nucleotidesMPMX19_03565 and MPMX19_03566 are separated by 33 nucleotidesMPMX19_03566 and MPMX19_03567 are separated by 51 nucleotides MPMX19_03564: MPMX19_03564 - Propane 2-monooxygenase, hydroxylase component large subunit, at 985,284 to 986,948 _03564 MPMX19_03565: MPMX19_03565 - hypothetical protein, at 987,474 to 987,866 _03565 MPMX19_03566: MPMX19_03566 - Lactoylglutathione lyase, at 987,900 to 988,295 _03566 MPMX19_03567: MPMX19_03567 - hypothetical protein, at 988,347 to 988,901 _03567 Position (kb) 987 988Strain fitness (log2 ratio) -2 -1 0 1 2at 986.482 kb on + strand, within MPMX19_03564at 986.482 kb on + strand, within MPMX19_03564at 986.482 kb on + strand, within MPMX19_03564at 986.482 kb on + strand, within MPMX19_03564at 986.482 kb on + strand, within MPMX19_03564at 986.482 kb on + strand, within MPMX19_03564at 986.482 kb on + strand, within MPMX19_03564at 986.482 kb on + strand, within MPMX19_03564at 986.482 kb on + strand, within MPMX19_03564at 986.483 kb on - strand, within MPMX19_03564at 986.483 kb on - strand, within MPMX19_03564at 986.483 kb on - strand, within MPMX19_03564at 986.483 kb on - strand, within MPMX19_03564at 986.483 kb on - strand, within MPMX19_03564at 986.494 kb on + strand, within MPMX19_03564at 986.494 kb on + strand, within MPMX19_03564at 986.494 kb on + strand, within MPMX19_03564at 986.495 kb on - strand, within MPMX19_03564at 986.495 kb on - strand, within MPMX19_03564at 986.495 kb on - strand, within MPMX19_03564at 986.495 kb on - strand, within MPMX19_03564at 986.495 kb on - strand, within MPMX19_03564at 986.728 kb on + strand, within MPMX19_03564at 986.729 kb on - strand, within MPMX19_03564at 986.729 kb on - strand, within MPMX19_03564at 986.729 kb on - strand, within MPMX19_03564at 986.764 kb on + strand, within MPMX19_03564at 986.764 kb on + strand, within MPMX19_03564at 986.764 kb on + strand, within MPMX19_03564at 986.764 kb on + strand, within MPMX19_03564at 986.765 kb on - strand, within MPMX19_03564at 986.765 kb on - strand, within MPMX19_03564at 986.765 kb on - strand, within MPMX19_03564at 986.765 kb on - strand, within MPMX19_03564at 986.815 kb on + strandat 986.815 kb on + strandat 986.815 kb on + strandat 986.815 kb on + strandat 986.815 kb on + strandat 986.816 kb on - strandat 986.816 kb on - strandat 986.816 kb on - strandat 986.816 kb on - strandat 986.848 kb on + strandat 986.848 kb on + strandat 986.848 kb on + strandat 986.848 kb on + strandat 986.848 kb on + strandat 986.849 kb on - strandat 986.849 kb on - strandat 986.849 kb on - strandat 987.011 kb on - strandat 987.011 kb on - strandat 987.264 kb on + strandat 987.265 kb on - strandat 987.265 kb on - strandat 987.529 kb on + strand, within MPMX19_03565at 987.530 kb on - strand, within MPMX19_03565at 987.651 kb on + strand, within MPMX19_03565at 987.651 kb on + strand, within MPMX19_03565at 987.652 kb on - strand, within MPMX19_03565at 987.789 kb on + strand, within MPMX19_03565at 987.789 kb on + strand, within MPMX19_03565at 987.789 kb on + strand, within MPMX19_03565at 987.789 kb on + strand, within MPMX19_03565at 987.789 kb on + strand, within MPMX19_03565at 987.789 kb on + strand, within MPMX19_03565at 987.789 kb on + strand, within MPMX19_03565at 987.789 kb on + strand, within MPMX19_03565at 987.789 kb on + strand, within MPMX19_03565at 987.789 kb on + strand, within MPMX19_03565at 987.789 kb on + strand, within MPMX19_03565at 987.789 kb on + strand, within MPMX19_03565at 987.789 kb on + strand, within MPMX19_03565at 987.789 kb on + strand, within MPMX19_03565at 987.790 kb on - strand, within MPMX19_03565at 987.790 kb on - strand, within MPMX19_03565at 987.790 kb on - strand, within MPMX19_03565at 987.790 kb on - strand, within MPMX19_03565at 987.790 kb on - strand, within MPMX19_03565at 987.790 kb on - strand, within MPMX19_03565at 987.798 kb on + strand, within MPMX19_03565at 987.798 kb on + strand, within MPMX19_03565at 987.798 kb on + strand, within MPMX19_03565at 987.960 kb on + strand, within MPMX19_03566at 987.960 kb on + strand, within MPMX19_03566at 987.960 kb on + strand, within MPMX19_03566at 987.961 kb on - strand, within MPMX19_03566at 987.961 kb on - strand, within MPMX19_03566at 987.961 kb on - strand, within MPMX19_03566at 987.961 kb on - strand, within MPMX19_03566at 987.961 kb on - strand, within MPMX19_03566at 988.023 kb on + strand, within MPMX19_03566at 988.023 kb on + strand, within MPMX19_03566at 988.023 kb on + strand, within MPMX19_03566at 988.024 kb on - strand, within MPMX19_03566at 988.024 kb on - strand, within MPMX19_03566at 988.089 kb on + strand, within MPMX19_03566at 988.089 kb on + strand, within MPMX19_03566at 988.089 kb on + strand, within MPMX19_03566at 988.089 kb on + strand, within MPMX19_03566at 988.089 kb on + strand, within MPMX19_03566at 988.090 kb on - strand, within MPMX19_03566at 988.254 kb on + strand, within MPMX19_03566at 988.254 kb on + strand, within MPMX19_03566at 988.254 kb on + strand, within MPMX19_03566at 988.255 kb on - strand, within MPMX19_03566at 988.255 kb on - strand, within MPMX19_03566at 988.255 kb on - strand, within MPMX19_03566at 988.293 kb on + strandat 988.318 kb on - strandat 988.540 kb on - strand, within MPMX19_03567at 988.540 kb on - strand, within MPMX19_03567at 988.566 kb on + strand, within MPMX19_03567at 988.566 kb on + strand, within MPMX19_03567at 988.567 kb on - strand, within MPMX19_03567at 988.567 kb on - strand, within MPMX19_03567at 988.567 kb on - strand, within MPMX19_03567at 988.567 kb on - strand, within MPMX19_03567at 988.567 kb on - strand, within MPMX19_03567at 988.569 kb on + strand, within MPMX19_03567at 988.569 kb on + strand, within MPMX19_03567at 988.569 kb on + strand, within MPMX19_03567at 988.569 kb on + strand, within MPMX19_03567at 988.570 kb on - strand, within MPMX19_03567at 988.570 kb on - strand, within MPMX19_03567at 988.689 kb on + strand, within MPMX19_03567at 988.689 kb on + strand, within MPMX19_03567at 988.689 kb on + strand, within MPMX19_03567at 988.689 kb on + strand, within MPMX19_03567at 988.689 kb on + strand, within MPMX19_03567at 988.689 kb on + strand, within MPMX19_03567at 988.689 kb on + strand, within MPMX19_03567at 988.689 kb on + strand, within MPMX19_03567at 988.690 kb on - strand, within MPMX19_03567at 988.690 kb on - strand, within MPMX19_03567at 988.690 kb on - strand, within MPMX19_03567at 988.791 kb on + strand, within MPMX19_03567at 988.791 kb on + strand, within MPMX19_03567at 988.792 kb on - strand, within MPMX19_03567at 988.792 kb on - strand, within MPMX19_03567at 988.825 kb on - strand, within MPMX19_03567at 988.845 kb on + strand, within MPMX19_03567at 988.854 kb on + strandat 988.854 kb on + strandat 988.854 kb on + strandat 988.855 kb on - strandat 988.855 kb on - strandat 988.855 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
remove
986,482 + MPMX19_03564 0.72 -1.4
986,482 + MPMX19_03564 0.72 +0.6
986,482 + MPMX19_03564 0.72 +0.6
986,482 + MPMX19_03564 0.72 +0.6
986,482 + MPMX19_03564 0.72 -0.6
986,482 + MPMX19_03564 0.72 +0.4
986,482 + MPMX19_03564 0.72 -0.3
986,482 + MPMX19_03564 0.72 -0.8
986,482 + MPMX19_03564 0.72 -1.4
986,483 - MPMX19_03564 0.72 -0.8
986,483 - MPMX19_03564 0.72 -1.4
986,483 - MPMX19_03564 0.72 -1.1
986,483 - MPMX19_03564 0.72 +1.6
986,483 - MPMX19_03564 0.72 -0.5
986,494 + MPMX19_03564 0.73 -1.6
986,494 + MPMX19_03564 0.73 +0.1
986,494 + MPMX19_03564 0.73 +1.9
986,495 - MPMX19_03564 0.73 -0.3
986,495 - MPMX19_03564 0.73 -2.2
986,495 - MPMX19_03564 0.73 -2.0
986,495 - MPMX19_03564 0.73 -0.4
986,495 - MPMX19_03564 0.73 -1.0
986,728 + MPMX19_03564 0.87 -2.1
986,729 - MPMX19_03564 0.87 -1.4
986,729 - MPMX19_03564 0.87 -0.2
986,729 - MPMX19_03564 0.87 -1.2
986,764 + MPMX19_03564 0.89 +0.3
986,764 + MPMX19_03564 0.89 -0.0
986,764 + MPMX19_03564 0.89 -0.6
986,764 + MPMX19_03564 0.89 +0.1
986,765 - MPMX19_03564 0.89 -0.9
986,765 - MPMX19_03564 0.89 -0.9
986,765 - MPMX19_03564 0.89 -1.2
986,765 - MPMX19_03564 0.89 +0.6
986,815 + -1.0
986,815 + -2.0
986,815 + -0.8
986,815 + -0.8
986,815 + -1.0
986,816 - -1.4
986,816 - -1.3
986,816 - -2.0
986,816 - -0.8
986,848 + -0.5
986,848 + -0.1
986,848 + +0.8
986,848 + -1.2
986,848 + -1.2
986,849 - +0.9
986,849 - -0.5
986,849 - +0.6
987,011 - -0.8
987,011 - -0.4
987,264 + -1.2
987,265 - -2.0
987,265 - +0.2
987,529 + MPMX19_03565 0.14 -2.0
987,530 - MPMX19_03565 0.14 -0.6
987,651 + MPMX19_03565 0.45 -0.8
987,651 + MPMX19_03565 0.45 +1.6
987,652 - MPMX19_03565 0.45 -0.6
987,789 + MPMX19_03565 0.80 -0.0
987,789 + MPMX19_03565 0.80 -1.4
987,789 + MPMX19_03565 0.80 +1.9
987,789 + MPMX19_03565 0.80 -1.0
987,789 + MPMX19_03565 0.80 -0.9
987,789 + MPMX19_03565 0.80 -1.4
987,789 + MPMX19_03565 0.80 -0.9
987,789 + MPMX19_03565 0.80 -0.2
987,789 + MPMX19_03565 0.80 -1.3
987,789 + MPMX19_03565 0.80 -2.0
987,789 + MPMX19_03565 0.80 -0.2
987,789 + MPMX19_03565 0.80 -1.3
987,789 + MPMX19_03565 0.80 +1.1
987,789 + MPMX19_03565 0.80 -1.3
987,790 - MPMX19_03565 0.80 +1.6
987,790 - MPMX19_03565 0.80 +0.6
987,790 - MPMX19_03565 0.80 -0.4
987,790 - MPMX19_03565 0.80 -0.8
987,790 - MPMX19_03565 0.80 -0.8
987,790 - MPMX19_03565 0.80 -0.2
987,798 + MPMX19_03565 0.82 -1.9
987,798 + MPMX19_03565 0.82 +0.6
987,798 + MPMX19_03565 0.82 +0.6
987,960 + MPMX19_03566 0.15 -1.0
987,960 + MPMX19_03566 0.15 +0.1
987,960 + MPMX19_03566 0.15 +0.0
987,961 - MPMX19_03566 0.15 +0.6
987,961 - MPMX19_03566 0.15 -1.3
987,961 - MPMX19_03566 0.15 -1.2
987,961 - MPMX19_03566 0.15 -0.8
987,961 - MPMX19_03566 0.15 -1.4
988,023 + MPMX19_03566 0.31 -1.4
988,023 + MPMX19_03566 0.31 -0.1
988,023 + MPMX19_03566 0.31 -0.7
988,024 - MPMX19_03566 0.31 -1.1
988,024 - MPMX19_03566 0.31 -0.7
988,089 + MPMX19_03566 0.48 -1.4
988,089 + MPMX19_03566 0.48 +1.6
988,089 + MPMX19_03566 0.48 +0.2
988,089 + MPMX19_03566 0.48 -0.6
988,089 + MPMX19_03566 0.48 +0.5
988,090 - MPMX19_03566 0.48 +0.7
988,254 + MPMX19_03566 0.89 +0.9
988,254 + MPMX19_03566 0.89 -2.2
988,254 + MPMX19_03566 0.89 +0.3
988,255 - MPMX19_03566 0.90 -0.2
988,255 - MPMX19_03566 0.90 +0.2
988,255 - MPMX19_03566 0.90 -0.9
988,293 + -1.3
988,318 - -0.0
988,540 - MPMX19_03567 0.35 -0.4
988,540 - MPMX19_03567 0.35 -0.6
988,566 + MPMX19_03567 0.39 -1.0
988,566 + MPMX19_03567 0.39 -1.1
988,567 - MPMX19_03567 0.40 +1.3
988,567 - MPMX19_03567 0.40 -0.0
988,567 - MPMX19_03567 0.40 +0.8
988,567 - MPMX19_03567 0.40 -0.3
988,567 - MPMX19_03567 0.40 -0.0
988,569 + MPMX19_03567 0.40 -0.6
988,569 + MPMX19_03567 0.40 -0.9
988,569 + MPMX19_03567 0.40 +0.6
988,569 + MPMX19_03567 0.40 -1.4
988,570 - MPMX19_03567 0.40 -2.4
988,570 - MPMX19_03567 0.40 -0.4
988,689 + MPMX19_03567 0.62 -0.1
988,689 + MPMX19_03567 0.62 +0.6
988,689 + MPMX19_03567 0.62 +0.6
988,689 + MPMX19_03567 0.62 -2.4
988,689 + MPMX19_03567 0.62 +0.1
988,689 + MPMX19_03567 0.62 +0.1
988,689 + MPMX19_03567 0.62 -1.0
988,689 + MPMX19_03567 0.62 -0.2
988,690 - MPMX19_03567 0.62 -1.3
988,690 - MPMX19_03567 0.62 -1.4
988,690 - MPMX19_03567 0.62 -0.9
988,791 + MPMX19_03567 0.80 -1.6
988,791 + MPMX19_03567 0.80 -0.5
988,792 - MPMX19_03567 0.80 -0.7
988,792 - MPMX19_03567 0.80 -0.3
988,825 - MPMX19_03567 0.86 -2.0
988,845 + MPMX19_03567 0.90 +0.3
988,854 + -0.5
988,854 + -1.0
988,854 + +0.8
988,855 - -1.2
988,855 - -0.3
988,855 - -0.5

Or see this region's nucleotide sequence