Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03562

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03560 and MPMX19_03561 are separated by 116 nucleotidesMPMX19_03561 and MPMX19_03562 are separated by 34 nucleotidesMPMX19_03562 and MPMX19_03563 are separated by 45 nucleotides MPMX19_03560: MPMX19_03560 - 60 kDa chaperonin, at 980,780 to 982,420 _03560 MPMX19_03561: MPMX19_03561 - Propane 2-monooxygenase, effector component, at 982,537 to 982,893 _03561 MPMX19_03562: MPMX19_03562 - Propane 2-monooxygenase, hydroxylase component small subunit, at 982,928 to 984,061 _03562 MPMX19_03563: MPMX19_03563 - Propane 2-monooxygenase, reductase component, at 984,107 to 985,165 _03563 Position (kb) 982 983 984 985Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 982.219 kb on + strand, within MPMX19_03560at 982.219 kb on + strand, within MPMX19_03560at 982.219 kb on + strand, within MPMX19_03560at 982.220 kb on - strand, within MPMX19_03560at 982.544 kb on + strandat 982.544 kb on + strandat 982.544 kb on + strandat 982.544 kb on + strandat 982.545 kb on - strandat 982.545 kb on - strandat 982.545 kb on - strandat 982.613 kb on + strand, within MPMX19_03561at 982.613 kb on + strand, within MPMX19_03561at 982.736 kb on + strand, within MPMX19_03561at 982.736 kb on + strand, within MPMX19_03561at 982.736 kb on + strand, within MPMX19_03561at 982.736 kb on + strand, within MPMX19_03561at 982.736 kb on + strand, within MPMX19_03561at 982.736 kb on + strand, within MPMX19_03561at 982.736 kb on + strand, within MPMX19_03561at 982.736 kb on + strand, within MPMX19_03561at 982.737 kb on - strand, within MPMX19_03561at 982.737 kb on - strand, within MPMX19_03561at 982.737 kb on - strand, within MPMX19_03561at 982.737 kb on - strand, within MPMX19_03561at 982.737 kb on - strand, within MPMX19_03561at 982.737 kb on - strand, within MPMX19_03561at 983.253 kb on + strand, within MPMX19_03562at 983.253 kb on + strand, within MPMX19_03562at 983.253 kb on + strand, within MPMX19_03562at 983.382 kb on + strand, within MPMX19_03562at 983.382 kb on + strand, within MPMX19_03562at 983.383 kb on - strand, within MPMX19_03562at 983.383 kb on - strand, within MPMX19_03562at 983.413 kb on + strand, within MPMX19_03562at 983.413 kb on + strand, within MPMX19_03562at 983.414 kb on - strand, within MPMX19_03562at 983.414 kb on - strand, within MPMX19_03562at 983.520 kb on + strand, within MPMX19_03562at 983.520 kb on + strand, within MPMX19_03562at 983.520 kb on + strand, within MPMX19_03562at 983.520 kb on + strand, within MPMX19_03562at 983.521 kb on - strand, within MPMX19_03562at 983.521 kb on - strand, within MPMX19_03562at 983.521 kb on - strand, within MPMX19_03562at 983.521 kb on - strand, within MPMX19_03562at 983.554 kb on - strand, within MPMX19_03562at 983.595 kb on + strand, within MPMX19_03562at 983.595 kb on + strand, within MPMX19_03562at 983.595 kb on + strand, within MPMX19_03562at 983.595 kb on + strand, within MPMX19_03562at 983.595 kb on + strand, within MPMX19_03562at 983.596 kb on - strand, within MPMX19_03562at 983.596 kb on - strand, within MPMX19_03562at 983.596 kb on - strand, within MPMX19_03562at 983.596 kb on - strand, within MPMX19_03562at 983.596 kb on - strand, within MPMX19_03562at 983.637 kb on + strand, within MPMX19_03562at 983.637 kb on + strand, within MPMX19_03562at 983.637 kb on + strand, within MPMX19_03562at 983.638 kb on - strand, within MPMX19_03562at 983.638 kb on - strand, within MPMX19_03562at 983.638 kb on - strand, within MPMX19_03562at 983.776 kb on - strand, within MPMX19_03562at 983.856 kb on + strand, within MPMX19_03562at 983.856 kb on + strand, within MPMX19_03562at 983.857 kb on - strand, within MPMX19_03562at 983.857 kb on - strand, within MPMX19_03562at 983.857 kb on - strand, within MPMX19_03562at 983.857 kb on - strand, within MPMX19_03562at 983.857 kb on - strand, within MPMX19_03562at 983.904 kb on + strand, within MPMX19_03562at 983.904 kb on + strand, within MPMX19_03562at 983.905 kb on - strand, within MPMX19_03562at 983.905 kb on - strand, within MPMX19_03562at 983.946 kb on + strand, within MPMX19_03562at 983.947 kb on - strand, within MPMX19_03562at 983.979 kb on + strandat 983.979 kb on + strandat 983.979 kb on + strandat 983.979 kb on + strandat 983.979 kb on + strandat 983.979 kb on + strandat 983.979 kb on + strandat 983.979 kb on + strandat 983.980 kb on - strandat 983.980 kb on - strandat 983.980 kb on - strandat 983.980 kb on - strandat 983.980 kb on - strandat 983.980 kb on - strandat 983.980 kb on - strandat 983.980 kb on - strandat 983.980 kb on - strandat 983.980 kb on - strandat 984.011 kb on + strandat 984.011 kb on + strandat 984.012 kb on - strandat 984.012 kb on - strandat 984.012 kb on - strandat 984.084 kb on + strandat 984.084 kb on + strandat 984.084 kb on + strandat 984.084 kb on + strandat 984.084 kb on + strandat 984.084 kb on + strandat 984.084 kb on + strandat 984.085 kb on - strandat 984.085 kb on - strandat 984.085 kb on - strandat 984.138 kb on + strandat 984.138 kb on + strandat 984.139 kb on - strandat 984.139 kb on - strandat 984.414 kb on + strand, within MPMX19_03563at 984.550 kb on - strand, within MPMX19_03563at 984.624 kb on + strand, within MPMX19_03563at 984.624 kb on + strand, within MPMX19_03563at 984.723 kb on + strand, within MPMX19_03563at 984.723 kb on + strand, within MPMX19_03563at 984.723 kb on + strand, within MPMX19_03563at 984.724 kb on - strand, within MPMX19_03563at 984.724 kb on - strand, within MPMX19_03563at 984.724 kb on - strand, within MPMX19_03563at 984.724 kb on - strand, within MPMX19_03563at 984.724 kb on - strand, within MPMX19_03563at 984.724 kb on - strand, within MPMX19_03563at 984.724 kb on - strand, within MPMX19_03563at 984.724 kb on - strand, within MPMX19_03563at 984.724 kb on - strand, within MPMX19_03563at 984.724 kb on - strand, within MPMX19_03563at 984.724 kb on - strand, within MPMX19_03563at 984.724 kb on - strand, within MPMX19_03563at 984.724 kb on - strand, within MPMX19_03563at 984.861 kb on + strand, within MPMX19_03563at 984.861 kb on + strand, within MPMX19_03563at 984.861 kb on + strand, within MPMX19_03563at 984.861 kb on + strand, within MPMX19_03563at 984.861 kb on + strand, within MPMX19_03563at 984.861 kb on + strand, within MPMX19_03563at 984.861 kb on + strand, within MPMX19_03563at 984.861 kb on + strand, within MPMX19_03563at 984.861 kb on + strand, within MPMX19_03563at 984.861 kb on + strand, within MPMX19_03563at 984.861 kb on + strand, within MPMX19_03563at 984.862 kb on - strand, within MPMX19_03563at 984.862 kb on - strand, within MPMX19_03563at 984.862 kb on - strand, within MPMX19_03563at 984.862 kb on - strand, within MPMX19_03563at 984.862 kb on - strand, within MPMX19_03563at 984.862 kb on - strand, within MPMX19_03563at 984.862 kb on - strand, within MPMX19_03563at 984.862 kb on - strand, within MPMX19_03563at 984.862 kb on - strand, within MPMX19_03563at 984.891 kb on + strand, within MPMX19_03563at 984.891 kb on + strand, within MPMX19_03563at 984.891 kb on + strand, within MPMX19_03563at 984.891 kb on + strand, within MPMX19_03563at 984.960 kb on + strand, within MPMX19_03563at 984.961 kb on - strand, within MPMX19_03563at 984.961 kb on - strand, within MPMX19_03563at 984.961 kb on - strand, within MPMX19_03563at 984.961 kb on - strand, within MPMX19_03563

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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982,219 + MPMX19_03560 0.88 -1.0
982,219 + MPMX19_03560 0.88 -3.1
982,219 + MPMX19_03560 0.88 -1.9
982,220 - MPMX19_03560 0.88 -2.1
982,544 + +0.3
982,544 + +0.1
982,544 + +0.4
982,544 + -0.0
982,545 - -0.2
982,545 - -0.3
982,545 - -1.8
982,613 + MPMX19_03561 0.21 -0.4
982,613 + MPMX19_03561 0.21 -1.4
982,736 + MPMX19_03561 0.56 +1.7
982,736 + MPMX19_03561 0.56 -1.1
982,736 + MPMX19_03561 0.56 -0.6
982,736 + MPMX19_03561 0.56 +0.8
982,736 + MPMX19_03561 0.56 -0.4
982,736 + MPMX19_03561 0.56 -0.6
982,736 + MPMX19_03561 0.56 -0.8
982,736 + MPMX19_03561 0.56 -1.6
982,737 - MPMX19_03561 0.56 -1.8
982,737 - MPMX19_03561 0.56 -0.8
982,737 - MPMX19_03561 0.56 -1.0
982,737 - MPMX19_03561 0.56 -0.2
982,737 - MPMX19_03561 0.56 +0.6
982,737 - MPMX19_03561 0.56 -0.3
983,253 + MPMX19_03562 0.29 -0.4
983,253 + MPMX19_03562 0.29 +1.1
983,253 + MPMX19_03562 0.29 +0.5
983,382 + MPMX19_03562 0.40 -0.8
983,382 + MPMX19_03562 0.40 +0.2
983,383 - MPMX19_03562 0.40 -0.8
983,383 - MPMX19_03562 0.40 -0.1
983,413 + MPMX19_03562 0.43 +1.8
983,413 + MPMX19_03562 0.43 -0.2
983,414 - MPMX19_03562 0.43 -1.0
983,414 - MPMX19_03562 0.43 -1.6
983,520 + MPMX19_03562 0.52 +0.1
983,520 + MPMX19_03562 0.52 +1.9
983,520 + MPMX19_03562 0.52 -1.8
983,520 + MPMX19_03562 0.52 -1.9
983,521 - MPMX19_03562 0.52 -2.5
983,521 - MPMX19_03562 0.52 -0.2
983,521 - MPMX19_03562 0.52 -1.8
983,521 - MPMX19_03562 0.52 +0.2
983,554 - MPMX19_03562 0.55 -0.3
983,595 + MPMX19_03562 0.59 -0.4
983,595 + MPMX19_03562 0.59 -2.8
983,595 + MPMX19_03562 0.59 -0.2
983,595 + MPMX19_03562 0.59 -0.8
983,595 + MPMX19_03562 0.59 -0.7
983,596 - MPMX19_03562 0.59 -0.0
983,596 - MPMX19_03562 0.59 -0.0
983,596 - MPMX19_03562 0.59 +1.6
983,596 - MPMX19_03562 0.59 -0.8
983,596 - MPMX19_03562 0.59 -0.0
983,637 + MPMX19_03562 0.63 -1.4
983,637 + MPMX19_03562 0.63 -0.9
983,637 + MPMX19_03562 0.63 -0.6
983,638 - MPMX19_03562 0.63 -2.1
983,638 - MPMX19_03562 0.63 -0.5
983,638 - MPMX19_03562 0.63 +0.2
983,776 - MPMX19_03562 0.75 +0.1
983,856 + MPMX19_03562 0.82 -0.3
983,856 + MPMX19_03562 0.82 -1.2
983,857 - MPMX19_03562 0.82 -1.0
983,857 - MPMX19_03562 0.82 -0.3
983,857 - MPMX19_03562 0.82 -0.9
983,857 - MPMX19_03562 0.82 -1.0
983,857 - MPMX19_03562 0.82 +0.3
983,904 + MPMX19_03562 0.86 -0.2
983,904 + MPMX19_03562 0.86 -1.6
983,905 - MPMX19_03562 0.86 -0.5
983,905 - MPMX19_03562 0.86 +0.1
983,946 + MPMX19_03562 0.90 -1.3
983,947 - MPMX19_03562 0.90 +1.6
983,979 + -0.3
983,979 + -2.0
983,979 + -0.0
983,979 + -0.8
983,979 + -0.3
983,979 + +0.3
983,979 + -0.0
983,979 + +0.3
983,980 - -0.4
983,980 - +0.3
983,980 - -0.2
983,980 - +0.7
983,980 - +0.3
983,980 - -2.8
983,980 - +0.6
983,980 - -2.0
983,980 - +0.7
983,980 - -1.2
984,011 + -0.1
984,011 + -1.5
984,012 - -0.8
984,012 - -1.1
984,012 - -1.1
984,084 + +0.4
984,084 + -0.0
984,084 + -0.9
984,084 + -0.1
984,084 + -1.1
984,084 + +0.1
984,084 + +1.1
984,085 - -0.7
984,085 - -0.6
984,085 - +0.2
984,138 + -0.1
984,138 + -1.0
984,139 - -2.1
984,139 - -0.2
984,414 + MPMX19_03563 0.29 -0.3
984,550 - MPMX19_03563 0.42 +0.1
984,624 + MPMX19_03563 0.49 -2.2
984,624 + MPMX19_03563 0.49 -3.1
984,723 + MPMX19_03563 0.58 -0.9
984,723 + MPMX19_03563 0.58 +2.1
984,723 + MPMX19_03563 0.58 -0.8
984,724 - MPMX19_03563 0.58 +0.6
984,724 - MPMX19_03563 0.58 -0.4
984,724 - MPMX19_03563 0.58 +0.6
984,724 - MPMX19_03563 0.58 +0.0
984,724 - MPMX19_03563 0.58 -0.4
984,724 - MPMX19_03563 0.58 +0.6
984,724 - MPMX19_03563 0.58 -1.1
984,724 - MPMX19_03563 0.58 -0.3
984,724 - MPMX19_03563 0.58 -2.2
984,724 - MPMX19_03563 0.58 +0.2
984,724 - MPMX19_03563 0.58 -0.2
984,724 - MPMX19_03563 0.58 -0.9
984,724 - MPMX19_03563 0.58 -1.3
984,861 + MPMX19_03563 0.71 -0.7
984,861 + MPMX19_03563 0.71 -0.1
984,861 + MPMX19_03563 0.71 -1.0
984,861 + MPMX19_03563 0.71 -0.0
984,861 + MPMX19_03563 0.71 -0.9
984,861 + MPMX19_03563 0.71 +1.4
984,861 + MPMX19_03563 0.71 -1.2
984,861 + MPMX19_03563 0.71 +1.2
984,861 + MPMX19_03563 0.71 -0.5
984,861 + MPMX19_03563 0.71 +0.4
984,861 + MPMX19_03563 0.71 -0.3
984,862 - MPMX19_03563 0.71 +0.1
984,862 - MPMX19_03563 0.71 -0.7
984,862 - MPMX19_03563 0.71 +0.8
984,862 - MPMX19_03563 0.71 +0.6
984,862 - MPMX19_03563 0.71 +0.6
984,862 - MPMX19_03563 0.71 -0.9
984,862 - MPMX19_03563 0.71 -0.4
984,862 - MPMX19_03563 0.71 +0.3
984,862 - MPMX19_03563 0.71 +1.1
984,891 + MPMX19_03563 0.74 -1.3
984,891 + MPMX19_03563 0.74 -1.1
984,891 + MPMX19_03563 0.74 -1.8
984,891 + MPMX19_03563 0.74 +0.3
984,960 + MPMX19_03563 0.81 -1.4
984,961 - MPMX19_03563 0.81 -0.2
984,961 - MPMX19_03563 0.81 +0.6
984,961 - MPMX19_03563 0.81 -0.3
984,961 - MPMX19_03563 0.81 +0.1

Or see this region's nucleotide sequence