Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03559

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03557 and MPMX19_03558 are separated by 27 nucleotidesMPMX19_03558 and MPMX19_03559 are separated by 63 nucleotidesMPMX19_03559 and MPMX19_03560 are separated by 226 nucleotides MPMX19_03557: MPMX19_03557 - HTH-type transcriptional regulator CynR, at 977,098 to 977,988 _03557 MPMX19_03558: MPMX19_03558 - hypothetical protein, at 978,016 to 978,396 _03558 MPMX19_03559: MPMX19_03559 - Acetoin dehydrogenase operon transcriptional activator AcoR, at 978,460 to 980,553 _03559 MPMX19_03560: MPMX19_03560 - 60 kDa chaperonin, at 980,780 to 982,420 _03560 Position (kb) 978 979 980 981Strain fitness (log2 ratio) -2 -1 0 1at 977.758 kb on + strand, within MPMX19_03557at 977.758 kb on + strand, within MPMX19_03557at 977.987 kb on - strandat 978.152 kb on + strand, within MPMX19_03558at 978.153 kb on - strand, within MPMX19_03558at 978.224 kb on + strand, within MPMX19_03558at 978.224 kb on + strand, within MPMX19_03558at 978.224 kb on + strand, within MPMX19_03558at 978.224 kb on + strand, within MPMX19_03558at 978.225 kb on - strand, within MPMX19_03558at 978.225 kb on - strand, within MPMX19_03558at 978.225 kb on - strand, within MPMX19_03558at 978.359 kb on + strandat 978.359 kb on + strandat 978.359 kb on + strandat 978.359 kb on + strandat 978.360 kb on - strandat 978.360 kb on - strandat 978.360 kb on - strandat 978.424 kb on + strandat 978.425 kb on - strandat 978.512 kb on + strandat 978.839 kb on + strand, within MPMX19_03559at 978.839 kb on + strand, within MPMX19_03559at 978.840 kb on - strand, within MPMX19_03559at 978.840 kb on - strand, within MPMX19_03559at 978.840 kb on - strand, within MPMX19_03559at 978.998 kb on + strand, within MPMX19_03559at 979.106 kb on + strand, within MPMX19_03559at 979.106 kb on + strand, within MPMX19_03559at 979.107 kb on - strand, within MPMX19_03559at 979.107 kb on - strand, within MPMX19_03559at 979.139 kb on + strand, within MPMX19_03559at 979.139 kb on + strand, within MPMX19_03559at 979.140 kb on - strand, within MPMX19_03559at 979.140 kb on - strand, within MPMX19_03559at 979.140 kb on - strand, within MPMX19_03559at 979.140 kb on - strand, within MPMX19_03559at 979.259 kb on + strand, within MPMX19_03559at 979.259 kb on + strand, within MPMX19_03559at 979.259 kb on + strand, within MPMX19_03559at 979.260 kb on - strand, within MPMX19_03559at 979.260 kb on - strand, within MPMX19_03559at 979.260 kb on - strand, within MPMX19_03559at 979.260 kb on - strand, within MPMX19_03559at 979.676 kb on - strand, within MPMX19_03559at 979.676 kb on - strand, within MPMX19_03559at 979.760 kb on + strand, within MPMX19_03559at 979.760 kb on + strand, within MPMX19_03559at 979.761 kb on - strand, within MPMX19_03559at 979.761 kb on - strand, within MPMX19_03559at 979.808 kb on + strand, within MPMX19_03559at 979.808 kb on + strand, within MPMX19_03559at 979.808 kb on + strand, within MPMX19_03559at 979.809 kb on - strand, within MPMX19_03559at 979.809 kb on - strand, within MPMX19_03559at 980.036 kb on + strand, within MPMX19_03559at 980.036 kb on + strand, within MPMX19_03559at 980.037 kb on - strand, within MPMX19_03559at 980.037 kb on - strand, within MPMX19_03559at 980.037 kb on - strand, within MPMX19_03559at 980.037 kb on - strand, within MPMX19_03559at 980.037 kb on - strand, within MPMX19_03559at 980.316 kb on + strand, within MPMX19_03559at 980.316 kb on + strand, within MPMX19_03559at 980.316 kb on + strand, within MPMX19_03559at 980.316 kb on + strand, within MPMX19_03559at 980.317 kb on - strand, within MPMX19_03559at 980.317 kb on - strand, within MPMX19_03559at 980.317 kb on - strand, within MPMX19_03559at 980.632 kb on + strandat 980.633 kb on - strandat 980.702 kb on + strandat 980.705 kb on + strandat 980.705 kb on + strandat 980.705 kb on + strandat 980.706 kb on - strandat 980.706 kb on - strandat 980.706 kb on - strandat 980.706 kb on - strandat 980.713 kb on + strandat 980.713 kb on + strandat 980.714 kb on - strandat 980.714 kb on - strandat 980.714 kb on - strandat 980.714 kb on - strandat 980.714 kb on - strandat 980.714 kb on - strandat 980.714 kb on - strandat 980.714 kb on - strandat 980.714 kb on - strandat 980.718 kb on + strandat 980.718 kb on + strandat 980.719 kb on - strandat 980.719 kb on - strandat 980.793 kb on + strandat 981.176 kb on - strand, within MPMX19_03560

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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977,758 + MPMX19_03557 0.74 -1.9
977,758 + MPMX19_03557 0.74 -1.2
977,987 - -0.1
978,152 + MPMX19_03558 0.36 -0.1
978,153 - MPMX19_03558 0.36 +0.2
978,224 + MPMX19_03558 0.55 -1.2
978,224 + MPMX19_03558 0.55 -1.1
978,224 + MPMX19_03558 0.55 -1.2
978,224 + MPMX19_03558 0.55 -0.4
978,225 - MPMX19_03558 0.55 -0.3
978,225 - MPMX19_03558 0.55 -2.0
978,225 - MPMX19_03558 0.55 -0.3
978,359 + -0.3
978,359 + +0.6
978,359 + -2.1
978,359 + -1.6
978,360 - -1.0
978,360 - -0.4
978,360 - -0.8
978,424 + -0.9
978,425 - -0.8
978,512 + -0.6
978,839 + MPMX19_03559 0.18 -0.8
978,839 + MPMX19_03559 0.18 -1.5
978,840 - MPMX19_03559 0.18 -0.2
978,840 - MPMX19_03559 0.18 -0.9
978,840 - MPMX19_03559 0.18 -2.2
978,998 + MPMX19_03559 0.26 -0.3
979,106 + MPMX19_03559 0.31 -1.6
979,106 + MPMX19_03559 0.31 -1.2
979,107 - MPMX19_03559 0.31 -2.0
979,107 - MPMX19_03559 0.31 -1.1
979,139 + MPMX19_03559 0.32 -1.2
979,139 + MPMX19_03559 0.32 -2.0
979,140 - MPMX19_03559 0.32 -0.8
979,140 - MPMX19_03559 0.32 +1.1
979,140 - MPMX19_03559 0.32 +0.1
979,140 - MPMX19_03559 0.32 -0.9
979,259 + MPMX19_03559 0.38 +0.6
979,259 + MPMX19_03559 0.38 +0.6
979,259 + MPMX19_03559 0.38 -0.4
979,260 - MPMX19_03559 0.38 -1.1
979,260 - MPMX19_03559 0.38 +0.1
979,260 - MPMX19_03559 0.38 +0.2
979,260 - MPMX19_03559 0.38 -0.6
979,676 - MPMX19_03559 0.58 -0.0
979,676 - MPMX19_03559 0.58 +0.7
979,760 + MPMX19_03559 0.62 +1.0
979,760 + MPMX19_03559 0.62 -0.8
979,761 - MPMX19_03559 0.62 -1.5
979,761 - MPMX19_03559 0.62 -2.1
979,808 + MPMX19_03559 0.64 -0.7
979,808 + MPMX19_03559 0.64 -0.0
979,808 + MPMX19_03559 0.64 -0.9
979,809 - MPMX19_03559 0.64 -1.4
979,809 - MPMX19_03559 0.64 -0.2
980,036 + MPMX19_03559 0.75 +0.7
980,036 + MPMX19_03559 0.75 +0.4
980,037 - MPMX19_03559 0.75 -0.6
980,037 - MPMX19_03559 0.75 +0.2
980,037 - MPMX19_03559 0.75 +0.8
980,037 - MPMX19_03559 0.75 -0.0
980,037 - MPMX19_03559 0.75 -0.2
980,316 + MPMX19_03559 0.89 -1.3
980,316 + MPMX19_03559 0.89 -2.0
980,316 + MPMX19_03559 0.89 +0.4
980,316 + MPMX19_03559 0.89 -0.3
980,317 - MPMX19_03559 0.89 -0.0
980,317 - MPMX19_03559 0.89 -1.8
980,317 - MPMX19_03559 0.89 +0.7
980,632 + +0.6
980,633 - +0.5
980,702 + -0.4
980,705 + +1.0
980,705 + +1.4
980,705 + -0.7
980,706 - +0.2
980,706 - -0.9
980,706 - -0.6
980,706 - -1.4
980,713 + -0.1
980,713 + +0.6
980,714 - -0.4
980,714 - -1.0
980,714 - -1.2
980,714 - -0.2
980,714 - -0.0
980,714 - -2.7
980,714 - -0.4
980,714 - +0.2
980,714 - -1.2
980,718 + -0.4
980,718 + -0.8
980,719 - -0.2
980,719 - -0.8
980,793 + +1.3
981,176 - MPMX19_03560 0.24 -0.3

Or see this region's nucleotide sequence