Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03556 and MPMX19_03557 are separated by 162 nucleotides MPMX19_03557 and MPMX19_03558 are separated by 27 nucleotides MPMX19_03558 and MPMX19_03559 are separated by 63 nucleotides
MPMX19_03556: MPMX19_03556 - Putative isomerase YbhH, at 975,835 to 976,935
_03556
MPMX19_03557: MPMX19_03557 - HTH-type transcriptional regulator CynR, at 977,098 to 977,988
_03557
MPMX19_03558: MPMX19_03558 - hypothetical protein, at 978,016 to 978,396
_03558
MPMX19_03559: MPMX19_03559 - Acetoin dehydrogenase operon transcriptional activator AcoR, at 978,460 to 980,553
_03559
Position (kb) 977
978 Strain fitness (log2 ratio) -2
-1
0
1 at 976.115 kb on + strand, within MPMX19_03556 at 976.115 kb on + strand, within MPMX19_03556 at 976.283 kb on + strand, within MPMX19_03556 at 976.283 kb on + strand, within MPMX19_03556 at 976.487 kb on + strand, within MPMX19_03556 at 976.487 kb on + strand, within MPMX19_03556 at 976.487 kb on + strand, within MPMX19_03556 at 976.487 kb on + strand, within MPMX19_03556 at 976.488 kb on - strand, within MPMX19_03556 at 976.488 kb on - strand, within MPMX19_03556 at 976.488 kb on - strand, within MPMX19_03556 at 976.488 kb on - strand, within MPMX19_03556 at 976.488 kb on - strand, within MPMX19_03556 at 976.488 kb on - strand, within MPMX19_03556 at 976.691 kb on + strand, within MPMX19_03556 at 976.691 kb on + strand, within MPMX19_03556 at 976.692 kb on - strand, within MPMX19_03556 at 976.692 kb on - strand, within MPMX19_03556 at 976.692 kb on - strand, within MPMX19_03556 at 976.692 kb on - strand, within MPMX19_03556 at 976.692 kb on - strand, within MPMX19_03556 at 977.032 kb on + strand at 977.413 kb on + strand, within MPMX19_03557 at 977.413 kb on + strand, within MPMX19_03557 at 977.413 kb on + strand, within MPMX19_03557 at 977.413 kb on + strand, within MPMX19_03557 at 977.413 kb on + strand, within MPMX19_03557 at 977.413 kb on + strand, within MPMX19_03557 at 977.413 kb on + strand, within MPMX19_03557 at 977.413 kb on + strand, within MPMX19_03557 at 977.414 kb on - strand, within MPMX19_03557 at 977.414 kb on - strand, within MPMX19_03557 at 977.414 kb on - strand, within MPMX19_03557 at 977.414 kb on - strand, within MPMX19_03557 at 977.414 kb on - strand, within MPMX19_03557 at 977.758 kb on + strand, within MPMX19_03557 at 977.758 kb on + strand, within MPMX19_03557 at 977.987 kb on - strand at 978.152 kb on + strand, within MPMX19_03558 at 978.153 kb on - strand, within MPMX19_03558 at 978.224 kb on + strand, within MPMX19_03558 at 978.224 kb on + strand, within MPMX19_03558 at 978.224 kb on + strand, within MPMX19_03558 at 978.224 kb on + strand, within MPMX19_03558 at 978.225 kb on - strand, within MPMX19_03558 at 978.225 kb on - strand, within MPMX19_03558 at 978.225 kb on - strand, within MPMX19_03558 at 978.359 kb on + strand at 978.359 kb on + strand at 978.359 kb on + strand at 978.359 kb on + strand at 978.360 kb on - strand at 978.360 kb on - strand at 978.360 kb on - strand at 978.424 kb on + strand at 978.425 kb on - strand at 978.512 kb on + strand at 978.839 kb on + strand, within MPMX19_03559 at 978.839 kb on + strand, within MPMX19_03559 at 978.840 kb on - strand, within MPMX19_03559 at 978.840 kb on - strand, within MPMX19_03559 at 978.840 kb on - strand, within MPMX19_03559
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 976,115 + MPMX19_03556 0.25 +0.1 976,115 + MPMX19_03556 0.25 +1.2 976,283 + MPMX19_03556 0.41 -0.4 976,283 + MPMX19_03556 0.41 -0.1 976,487 + MPMX19_03556 0.59 -0.6 976,487 + MPMX19_03556 0.59 +0.2 976,487 + MPMX19_03556 0.59 -1.1 976,487 + MPMX19_03556 0.59 +0.6 976,488 - MPMX19_03556 0.59 +0.3 976,488 - MPMX19_03556 0.59 -0.8 976,488 - MPMX19_03556 0.59 -0.2 976,488 - MPMX19_03556 0.59 -0.0 976,488 - MPMX19_03556 0.59 +0.8 976,488 - MPMX19_03556 0.59 -0.0 976,691 + MPMX19_03556 0.78 -0.1 976,691 + MPMX19_03556 0.78 -0.9 976,692 - MPMX19_03556 0.78 -1.0 976,692 - MPMX19_03556 0.78 -0.2 976,692 - MPMX19_03556 0.78 -2.0 976,692 - MPMX19_03556 0.78 +0.3 976,692 - MPMX19_03556 0.78 +0.7 977,032 + -0.7 977,413 + MPMX19_03557 0.35 -1.6 977,413 + MPMX19_03557 0.35 +0.6 977,413 + MPMX19_03557 0.35 -0.4 977,413 + MPMX19_03557 0.35 -0.7 977,413 + MPMX19_03557 0.35 -0.0 977,413 + MPMX19_03557 0.35 -0.3 977,413 + MPMX19_03557 0.35 +1.6 977,413 + MPMX19_03557 0.35 +1.2 977,414 - MPMX19_03557 0.35 -1.3 977,414 - MPMX19_03557 0.35 -1.1 977,414 - MPMX19_03557 0.35 -1.0 977,414 - MPMX19_03557 0.35 -0.0 977,414 - MPMX19_03557 0.35 -1.2 977,758 + MPMX19_03557 0.74 -1.9 977,758 + MPMX19_03557 0.74 -1.2 977,987 - -0.1 978,152 + MPMX19_03558 0.36 -0.1 978,153 - MPMX19_03558 0.36 +0.2 978,224 + MPMX19_03558 0.55 -1.2 978,224 + MPMX19_03558 0.55 -1.1 978,224 + MPMX19_03558 0.55 -1.2 978,224 + MPMX19_03558 0.55 -0.4 978,225 - MPMX19_03558 0.55 -0.3 978,225 - MPMX19_03558 0.55 -2.0 978,225 - MPMX19_03558 0.55 -0.3 978,359 + -0.3 978,359 + +0.6 978,359 + -2.1 978,359 + -1.6 978,360 - -1.0 978,360 - -0.4 978,360 - -0.8 978,424 + -0.9 978,425 - -0.8 978,512 + -0.6 978,839 + MPMX19_03559 0.18 -0.8 978,839 + MPMX19_03559 0.18 -1.5 978,840 - MPMX19_03559 0.18 -0.2 978,840 - MPMX19_03559 0.18 -0.9 978,840 - MPMX19_03559 0.18 -2.2
Or see this region's nucleotide sequence