Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03543 and MPMX19_03544 are separated by 19 nucleotides MPMX19_03544 and MPMX19_03545 overlap by 1 nucleotides
MPMX19_03543: MPMX19_03543 - putative ABC transporter ATP-binding protein YejF, at 962,599 to 964,200
_03543
MPMX19_03544: MPMX19_03544 - N-formyl-4-amino-5-aminomethyl-2- methylpyrimidine deformylase, at 964,220 to 965,431
_03544
MPMX19_03545: MPMX19_03545 - Ectoine hydrolase, at 965,431 to 966,570
_03545
Position (kb)
964
965
966 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 963.226 kb on + strand, within MPMX19_03543 at 963.227 kb on - strand, within MPMX19_03543 at 963.227 kb on - strand, within MPMX19_03543 at 963.227 kb on - strand, within MPMX19_03543 at 963.227 kb on - strand, within MPMX19_03543 at 963.227 kb on - strand, within MPMX19_03543 at 963.451 kb on + strand, within MPMX19_03543 at 963.452 kb on - strand, within MPMX19_03543 at 963.847 kb on + strand, within MPMX19_03543 at 963.848 kb on - strand, within MPMX19_03543 at 964.030 kb on + strand, within MPMX19_03543 at 964.030 kb on + strand, within MPMX19_03543 at 964.031 kb on - strand, within MPMX19_03543 at 964.031 kb on - strand, within MPMX19_03543 at 964.031 kb on - strand, within MPMX19_03543 at 964.031 kb on - strand, within MPMX19_03543 at 964.156 kb on + strand at 964.157 kb on - strand at 964.301 kb on + strand at 964.301 kb on + strand at 964.301 kb on + strand at 964.301 kb on + strand at 964.302 kb on - strand at 964.302 kb on - strand at 964.302 kb on - strand at 964.302 kb on - strand at 964.302 kb on - strand at 964.302 kb on - strand at 964.302 kb on - strand at 964.302 kb on - strand at 964.538 kb on + strand, within MPMX19_03544 at 964.538 kb on + strand, within MPMX19_03544 at 964.538 kb on + strand, within MPMX19_03544 at 964.538 kb on + strand, within MPMX19_03544 at 964.538 kb on + strand, within MPMX19_03544 at 964.539 kb on - strand, within MPMX19_03544 at 964.539 kb on - strand, within MPMX19_03544 at 964.539 kb on - strand, within MPMX19_03544 at 964.539 kb on - strand, within MPMX19_03544 at 964.539 kb on - strand, within MPMX19_03544 at 964.539 kb on - strand, within MPMX19_03544 at 964.539 kb on - strand, within MPMX19_03544 at 964.539 kb on - strand, within MPMX19_03544 at 964.580 kb on + strand, within MPMX19_03544 at 964.580 kb on + strand, within MPMX19_03544 at 964.646 kb on + strand, within MPMX19_03544 at 964.646 kb on + strand, within MPMX19_03544 at 964.646 kb on + strand, within MPMX19_03544 at 964.646 kb on + strand, within MPMX19_03544 at 964.646 kb on + strand, within MPMX19_03544 at 964.646 kb on + strand, within MPMX19_03544 at 964.646 kb on + strand, within MPMX19_03544 at 964.646 kb on + strand, within MPMX19_03544 at 964.646 kb on + strand, within MPMX19_03544 at 964.646 kb on + strand, within MPMX19_03544 at 964.647 kb on - strand, within MPMX19_03544 at 964.647 kb on - strand, within MPMX19_03544 at 964.647 kb on - strand, within MPMX19_03544 at 964.647 kb on - strand, within MPMX19_03544 at 964.647 kb on - strand, within MPMX19_03544 at 964.647 kb on - strand, within MPMX19_03544 at 964.647 kb on - strand, within MPMX19_03544 at 964.647 kb on - strand, within MPMX19_03544 at 964.647 kb on - strand, within MPMX19_03544 at 964.647 kb on - strand, within MPMX19_03544 at 964.647 kb on - strand, within MPMX19_03544 at 964.647 kb on - strand, within MPMX19_03544 at 965.027 kb on + strand, within MPMX19_03544 at 965.211 kb on - strand, within MPMX19_03544 at 965.267 kb on + strand, within MPMX19_03544 at 965.267 kb on + strand, within MPMX19_03544 at 965.267 kb on + strand, within MPMX19_03544 at 965.267 kb on + strand, within MPMX19_03544 at 965.267 kb on + strand, within MPMX19_03544 at 965.268 kb on - strand, within MPMX19_03544 at 965.268 kb on - strand, within MPMX19_03544 at 965.268 kb on - strand, within MPMX19_03544 at 965.339 kb on + strand at 965.339 kb on + strand at 965.339 kb on + strand at 965.339 kb on + strand at 965.339 kb on + strand at 965.378 kb on + strand at 965.379 kb on - strand at 965.379 kb on - strand at 965.399 kb on + strand at 965.399 kb on + strand at 965.399 kb on + strand at 965.399 kb on + strand at 965.399 kb on + strand at 965.399 kb on + strand at 965.399 kb on + strand at 965.399 kb on + strand at 965.399 kb on + strand at 965.399 kb on + strand at 965.399 kb on + strand at 965.399 kb on + strand at 965.399 kb on + strand at 965.399 kb on + strand at 965.399 kb on + strand at 965.400 kb on - strand at 965.400 kb on - strand at 965.400 kb on - strand at 965.400 kb on - strand at 965.400 kb on - strand at 965.400 kb on - strand at 965.555 kb on - strand, within MPMX19_03545 at 965.555 kb on - strand, within MPMX19_03545 at 965.773 kb on + strand, within MPMX19_03545 at 965.773 kb on + strand, within MPMX19_03545 at 965.773 kb on + strand, within MPMX19_03545 at 965.773 kb on + strand, within MPMX19_03545 at 965.773 kb on + strand, within MPMX19_03545 at 965.774 kb on - strand, within MPMX19_03545 at 966.163 kb on + strand, within MPMX19_03545 at 966.163 kb on + strand, within MPMX19_03545 at 966.164 kb on - strand, within MPMX19_03545 at 966.164 kb on - strand, within MPMX19_03545 at 966.346 kb on + strand, within MPMX19_03545 at 966.364 kb on + strand, within MPMX19_03545 at 966.364 kb on + strand, within MPMX19_03545 at 966.379 kb on + strand, within MPMX19_03545 at 966.380 kb on - strand, within MPMX19_03545
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 963,226 + MPMX19_03543 0.39 -0.4 963,227 - MPMX19_03543 0.39 -1.7 963,227 - MPMX19_03543 0.39 -1.2 963,227 - MPMX19_03543 0.39 -1.4 963,227 - MPMX19_03543 0.39 -0.4 963,227 - MPMX19_03543 0.39 -0.4 963,451 + MPMX19_03543 0.53 -1.3 963,452 - MPMX19_03543 0.53 +1.6 963,847 + MPMX19_03543 0.78 +0.8 963,848 - MPMX19_03543 0.78 -0.8 964,030 + MPMX19_03543 0.89 -0.4 964,030 + MPMX19_03543 0.89 +1.6 964,031 - MPMX19_03543 0.89 -0.3 964,031 - MPMX19_03543 0.89 +0.2 964,031 - MPMX19_03543 0.89 +0.6 964,031 - MPMX19_03543 0.89 -1.2 964,156 + -0.4 964,157 - -0.3 964,301 + -1.0 964,301 + -1.4 964,301 + -1.4 964,301 + +0.8 964,302 - +0.4 964,302 - -0.4 964,302 - +0.7 964,302 - -1.1 964,302 - -0.0 964,302 - +1.6 964,302 - +0.2 964,302 - +0.3 964,538 + MPMX19_03544 0.26 -0.5 964,538 + MPMX19_03544 0.26 -0.0 964,538 + MPMX19_03544 0.26 -0.4 964,538 + MPMX19_03544 0.26 +0.6 964,538 + MPMX19_03544 0.26 -1.0 964,539 - MPMX19_03544 0.26 -0.6 964,539 - MPMX19_03544 0.26 +0.1 964,539 - MPMX19_03544 0.26 +0.8 964,539 - MPMX19_03544 0.26 -0.2 964,539 - MPMX19_03544 0.26 -0.0 964,539 - MPMX19_03544 0.26 -0.6 964,539 - MPMX19_03544 0.26 -1.1 964,539 - MPMX19_03544 0.26 -1.4 964,580 + MPMX19_03544 0.30 -0.2 964,580 + MPMX19_03544 0.30 -1.8 964,646 + MPMX19_03544 0.35 -1.1 964,646 + MPMX19_03544 0.35 -1.4 964,646 + MPMX19_03544 0.35 -0.8 964,646 + MPMX19_03544 0.35 -1.4 964,646 + MPMX19_03544 0.35 -1.2 964,646 + MPMX19_03544 0.35 +0.2 964,646 + MPMX19_03544 0.35 +1.1 964,646 + MPMX19_03544 0.35 -0.0 964,646 + MPMX19_03544 0.35 +0.4 964,646 + MPMX19_03544 0.35 +0.1 964,647 - MPMX19_03544 0.35 -1.0 964,647 - MPMX19_03544 0.35 -0.4 964,647 - MPMX19_03544 0.35 -0.2 964,647 - MPMX19_03544 0.35 -1.2 964,647 - MPMX19_03544 0.35 -0.2 964,647 - MPMX19_03544 0.35 -1.8 964,647 - MPMX19_03544 0.35 -0.4 964,647 - MPMX19_03544 0.35 -1.0 964,647 - MPMX19_03544 0.35 -0.9 964,647 - MPMX19_03544 0.35 -0.4 964,647 - MPMX19_03544 0.35 -1.9 964,647 - MPMX19_03544 0.35 +0.2 965,027 + MPMX19_03544 0.67 +0.4 965,211 - MPMX19_03544 0.82 +0.1 965,267 + MPMX19_03544 0.86 +0.4 965,267 + MPMX19_03544 0.86 -1.6 965,267 + MPMX19_03544 0.86 -1.9 965,267 + MPMX19_03544 0.86 -0.4 965,267 + MPMX19_03544 0.86 -1.7 965,268 - MPMX19_03544 0.86 -0.4 965,268 - MPMX19_03544 0.86 -1.5 965,268 - MPMX19_03544 0.86 -0.5 965,339 + -1.8 965,339 + -0.4 965,339 + +1.1 965,339 + +0.3 965,339 + +1.0 965,378 + -0.8 965,379 - -0.9 965,379 - +0.2 965,399 + -0.4 965,399 + -0.4 965,399 + +0.0 965,399 + -0.0 965,399 + -2.6 965,399 + -0.0 965,399 + -0.5 965,399 + -1.7 965,399 + -1.4 965,399 + +0.8 965,399 + +0.0 965,399 + +0.6 965,399 + -0.9 965,399 + -1.0 965,399 + -0.4 965,400 - -1.1 965,400 - -2.0 965,400 - -1.0 965,400 - -0.2 965,400 - -1.8 965,400 - -0.3 965,555 - MPMX19_03545 0.11 -0.9 965,555 - MPMX19_03545 0.11 +0.1 965,773 + MPMX19_03545 0.30 +0.1 965,773 + MPMX19_03545 0.30 -0.7 965,773 + MPMX19_03545 0.30 -0.3 965,773 + MPMX19_03545 0.30 +0.4 965,773 + MPMX19_03545 0.30 +0.4 965,774 - MPMX19_03545 0.30 +0.6 966,163 + MPMX19_03545 0.64 -0.8 966,163 + MPMX19_03545 0.64 -0.3 966,164 - MPMX19_03545 0.64 -0.2 966,164 - MPMX19_03545 0.64 -1.0 966,346 + MPMX19_03545 0.80 +2.0 966,364 + MPMX19_03545 0.82 -0.2 966,364 + MPMX19_03545 0.82 +1.1 966,379 + MPMX19_03545 0.83 -0.7 966,380 - MPMX19_03545 0.83 -0.0
Or see this region's nucleotide sequence