Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03539

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03537 and MPMX19_03538 are separated by 69 nucleotidesMPMX19_03538 and MPMX19_03539 are separated by 104 nucleotidesMPMX19_03539 and MPMX19_03540 overlap by 4 nucleotides MPMX19_03537: MPMX19_03537 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 956,261 to 956,962 _03537 MPMX19_03538: MPMX19_03538 - HTH-type transcriptional repressor NagR, at 957,032 to 957,781 _03538 MPMX19_03539: MPMX19_03539 - Acetylornithine deacetylase, at 957,886 to 959,259 _03539 MPMX19_03540: MPMX19_03540 - putative deoxycholate-binding periplasmic protein YgiS, at 959,256 to 960,827 _03540 Position (kb) 957 958 959 960Strain fitness (log2 ratio) -2 -1 0 1 2 3at 956.948 kb on + strandat 956.948 kb on + strandat 956.948 kb on + strandat 956.948 kb on + strandat 956.948 kb on + strandat 956.948 kb on + strandat 956.948 kb on + strandat 956.948 kb on + strandat 956.949 kb on - strandat 956.949 kb on - strandat 957.051 kb on + strandat 957.051 kb on + strandat 957.051 kb on + strandat 957.051 kb on + strandat 957.051 kb on + strandat 957.051 kb on + strandat 957.051 kb on + strandat 957.051 kb on + strandat 957.051 kb on + strandat 957.051 kb on + strandat 957.051 kb on + strandat 957.051 kb on + strandat 957.051 kb on + strandat 957.052 kb on - strandat 957.052 kb on - strandat 957.052 kb on - strandat 957.052 kb on - strandat 957.052 kb on - strandat 957.052 kb on - strandat 957.052 kb on - strandat 957.052 kb on - strandat 957.052 kb on - strandat 957.052 kb on - strandat 957.052 kb on - strandat 957.052 kb on - strandat 957.052 kb on - strandat 957.052 kb on - strandat 957.052 kb on - strandat 957.052 kb on - strandat 957.052 kb on - strandat 957.255 kb on + strand, within MPMX19_03538at 957.255 kb on + strand, within MPMX19_03538at 957.256 kb on - strand, within MPMX19_03538at 957.256 kb on - strand, within MPMX19_03538at 957.256 kb on - strand, within MPMX19_03538at 957.498 kb on + strand, within MPMX19_03538at 957.499 kb on - strand, within MPMX19_03538at 957.499 kb on - strand, within MPMX19_03538at 957.501 kb on + strand, within MPMX19_03538at 957.501 kb on + strand, within MPMX19_03538at 957.502 kb on - strand, within MPMX19_03538at 957.860 kb on - strandat 957.936 kb on + strandat 958.033 kb on + strand, within MPMX19_03539at 958.201 kb on + strand, within MPMX19_03539at 958.201 kb on + strand, within MPMX19_03539at 958.202 kb on - strand, within MPMX19_03539at 958.202 kb on - strand, within MPMX19_03539at 958.202 kb on - strand, within MPMX19_03539at 958.202 kb on - strand, within MPMX19_03539at 958.282 kb on + strand, within MPMX19_03539at 958.283 kb on - strand, within MPMX19_03539at 958.283 kb on - strand, within MPMX19_03539at 958.372 kb on + strand, within MPMX19_03539at 958.372 kb on + strand, within MPMX19_03539at 958.432 kb on + strand, within MPMX19_03539at 958.432 kb on + strand, within MPMX19_03539at 958.432 kb on + strand, within MPMX19_03539at 958.433 kb on - strand, within MPMX19_03539at 958.433 kb on - strand, within MPMX19_03539at 958.433 kb on - strand, within MPMX19_03539at 958.433 kb on - strand, within MPMX19_03539at 958.465 kb on - strand, within MPMX19_03539at 958.792 kb on + strand, within MPMX19_03539at 958.793 kb on - strand, within MPMX19_03539at 958.810 kb on + strand, within MPMX19_03539at 958.810 kb on + strand, within MPMX19_03539at 958.810 kb on + strand, within MPMX19_03539at 958.810 kb on + strand, within MPMX19_03539at 958.810 kb on + strand, within MPMX19_03539at 958.810 kb on + strand, within MPMX19_03539at 958.810 kb on + strand, within MPMX19_03539at 958.810 kb on + strand, within MPMX19_03539at 958.810 kb on + strand, within MPMX19_03539at 958.810 kb on + strand, within MPMX19_03539at 958.810 kb on + strand, within MPMX19_03539at 958.810 kb on + strand, within MPMX19_03539at 958.810 kb on + strand, within MPMX19_03539at 958.811 kb on - strand, within MPMX19_03539at 958.811 kb on - strand, within MPMX19_03539at 958.811 kb on - strand, within MPMX19_03539at 958.811 kb on - strand, within MPMX19_03539at 958.811 kb on - strand, within MPMX19_03539at 958.811 kb on - strand, within MPMX19_03539at 958.811 kb on - strand, within MPMX19_03539at 958.811 kb on - strand, within MPMX19_03539at 958.811 kb on - strand, within MPMX19_03539at 958.811 kb on - strand, within MPMX19_03539at 958.811 kb on - strand, within MPMX19_03539at 958.811 kb on - strand, within MPMX19_03539at 959.159 kb on - strandat 959.159 kb on - strandat 959.159 kb on - strandat 959.187 kb on + strandat 959.187 kb on + strandat 959.187 kb on + strandat 959.187 kb on + strandat 959.187 kb on + strandat 959.187 kb on + strandat 959.187 kb on + strandat 959.188 kb on - strandat 959.188 kb on - strandat 959.188 kb on - strandat 959.188 kb on - strandat 959.188 kb on - strandat 959.188 kb on - strandat 959.322 kb on - strandat 959.448 kb on + strand, within MPMX19_03540at 959.448 kb on + strand, within MPMX19_03540at 959.448 kb on + strand, within MPMX19_03540at 959.448 kb on + strand, within MPMX19_03540at 959.449 kb on - strand, within MPMX19_03540at 959.469 kb on + strand, within MPMX19_03540at 959.469 kb on + strand, within MPMX19_03540at 959.469 kb on + strand, within MPMX19_03540at 959.469 kb on + strand, within MPMX19_03540at 959.469 kb on + strand, within MPMX19_03540at 959.469 kb on + strand, within MPMX19_03540at 959.470 kb on - strand, within MPMX19_03540at 959.470 kb on - strand, within MPMX19_03540at 959.470 kb on - strand, within MPMX19_03540at 959.772 kb on + strand, within MPMX19_03540at 959.773 kb on - strand, within MPMX19_03540at 959.773 kb on - strand, within MPMX19_03540at 959.773 kb on - strand, within MPMX19_03540at 959.773 kb on - strand, within MPMX19_03540at 959.913 kb on + strand, within MPMX19_03540at 959.913 kb on + strand, within MPMX19_03540at 959.913 kb on + strand, within MPMX19_03540at 959.913 kb on + strand, within MPMX19_03540at 959.913 kb on + strand, within MPMX19_03540at 959.916 kb on + strand, within MPMX19_03540at 959.916 kb on + strand, within MPMX19_03540at 959.916 kb on + strand, within MPMX19_03540at 959.916 kb on + strand, within MPMX19_03540at 959.916 kb on + strand, within MPMX19_03540at 959.916 kb on + strand, within MPMX19_03540at 959.916 kb on + strand, within MPMX19_03540at 959.916 kb on + strand, within MPMX19_03540at 959.916 kb on + strand, within MPMX19_03540at 959.916 kb on + strand, within MPMX19_03540at 959.916 kb on + strand, within MPMX19_03540at 959.917 kb on - strand, within MPMX19_03540at 959.917 kb on - strand, within MPMX19_03540at 959.917 kb on - strand, within MPMX19_03540at 959.917 kb on - strand, within MPMX19_03540at 959.917 kb on - strand, within MPMX19_03540at 959.917 kb on - strand, within MPMX19_03540at 959.934 kb on + strand, within MPMX19_03540at 959.935 kb on - strand, within MPMX19_03540at 960.039 kb on + strand, within MPMX19_03540at 960.211 kb on - strand, within MPMX19_03540

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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956,948 + +1.7
956,948 + -0.3
956,948 + -1.0
956,948 + -0.2
956,948 + -1.0
956,948 + -0.0
956,948 + -1.0
956,948 + -1.3
956,949 - -0.1
956,949 - -0.0
957,051 + -1.2
957,051 + -1.8
957,051 + +0.1
957,051 + -0.3
957,051 + -0.2
957,051 + +0.2
957,051 + -0.3
957,051 + -0.8
957,051 + -1.9
957,051 + +2.0
957,051 + -1.2
957,051 + -0.0
957,051 + -1.3
957,052 - -1.2
957,052 - -0.9
957,052 - +0.5
957,052 - +0.3
957,052 - +0.6
957,052 - +1.8
957,052 - -1.7
957,052 - -1.1
957,052 - -0.0
957,052 - -1.1
957,052 - -0.7
957,052 - -1.2
957,052 - +0.1
957,052 - +1.3
957,052 - +3.7
957,052 - -1.3
957,052 - +0.3
957,255 + MPMX19_03538 0.30 +0.7
957,255 + MPMX19_03538 0.30 -1.6
957,256 - MPMX19_03538 0.30 -2.2
957,256 - MPMX19_03538 0.30 +0.1
957,256 - MPMX19_03538 0.30 -1.3
957,498 + MPMX19_03538 0.62 -0.2
957,499 - MPMX19_03538 0.62 +0.9
957,499 - MPMX19_03538 0.62 +1.0
957,501 + MPMX19_03538 0.63 -0.9
957,501 + MPMX19_03538 0.63 -1.6
957,502 - MPMX19_03538 0.63 -1.0
957,860 - -1.1
957,936 + -0.4
958,033 + MPMX19_03539 0.11 +0.1
958,201 + MPMX19_03539 0.23 +0.8
958,201 + MPMX19_03539 0.23 -0.1
958,202 - MPMX19_03539 0.23 -0.4
958,202 - MPMX19_03539 0.23 -1.6
958,202 - MPMX19_03539 0.23 -0.3
958,202 - MPMX19_03539 0.23 -1.3
958,282 + MPMX19_03539 0.29 +0.4
958,283 - MPMX19_03539 0.29 -0.6
958,283 - MPMX19_03539 0.29 -0.9
958,372 + MPMX19_03539 0.35 -1.2
958,372 + MPMX19_03539 0.35 -0.0
958,432 + MPMX19_03539 0.40 +0.4
958,432 + MPMX19_03539 0.40 -0.7
958,432 + MPMX19_03539 0.40 +0.2
958,433 - MPMX19_03539 0.40 -0.8
958,433 - MPMX19_03539 0.40 -0.9
958,433 - MPMX19_03539 0.40 -0.5
958,433 - MPMX19_03539 0.40 +0.4
958,465 - MPMX19_03539 0.42 -0.7
958,792 + MPMX19_03539 0.66 -0.2
958,793 - MPMX19_03539 0.66 -1.6
958,810 + MPMX19_03539 0.67 +0.9
958,810 + MPMX19_03539 0.67 +0.6
958,810 + MPMX19_03539 0.67 +0.7
958,810 + MPMX19_03539 0.67 -0.0
958,810 + MPMX19_03539 0.67 +0.1
958,810 + MPMX19_03539 0.67 +0.1
958,810 + MPMX19_03539 0.67 +0.6
958,810 + MPMX19_03539 0.67 +0.3
958,810 + MPMX19_03539 0.67 -0.0
958,810 + MPMX19_03539 0.67 +0.7
958,810 + MPMX19_03539 0.67 -0.1
958,810 + MPMX19_03539 0.67 -0.0
958,810 + MPMX19_03539 0.67 -0.3
958,811 - MPMX19_03539 0.67 +0.2
958,811 - MPMX19_03539 0.67 +1.0
958,811 - MPMX19_03539 0.67 -0.3
958,811 - MPMX19_03539 0.67 +1.0
958,811 - MPMX19_03539 0.67 +0.0
958,811 - MPMX19_03539 0.67 +1.0
958,811 - MPMX19_03539 0.67 +0.1
958,811 - MPMX19_03539 0.67 -1.1
958,811 - MPMX19_03539 0.67 -0.6
958,811 - MPMX19_03539 0.67 +1.3
958,811 - MPMX19_03539 0.67 +0.0
958,811 - MPMX19_03539 0.67 -0.2
959,159 - -0.6
959,159 - -1.6
959,159 - +0.6
959,187 + -0.4
959,187 + -0.7
959,187 + -1.2
959,187 + -1.8
959,187 + -0.8
959,187 + -1.2
959,187 + -1.6
959,188 - -0.8
959,188 - -2.4
959,188 - -0.7
959,188 - +0.3
959,188 - +0.6
959,188 - -1.8
959,322 - -1.8
959,448 + MPMX19_03540 0.12 -0.2
959,448 + MPMX19_03540 0.12 +0.2
959,448 + MPMX19_03540 0.12 -1.3
959,448 + MPMX19_03540 0.12 +1.4
959,449 - MPMX19_03540 0.12 +0.2
959,469 + MPMX19_03540 0.14 -0.9
959,469 + MPMX19_03540 0.14 -0.8
959,469 + MPMX19_03540 0.14 -1.8
959,469 + MPMX19_03540 0.14 -0.8
959,469 + MPMX19_03540 0.14 -0.9
959,469 + MPMX19_03540 0.14 +0.6
959,470 - MPMX19_03540 0.14 -0.4
959,470 - MPMX19_03540 0.14 -0.4
959,470 - MPMX19_03540 0.14 -1.8
959,772 + MPMX19_03540 0.33 -0.5
959,773 - MPMX19_03540 0.33 -1.2
959,773 - MPMX19_03540 0.33 -0.1
959,773 - MPMX19_03540 0.33 -0.9
959,773 - MPMX19_03540 0.33 -0.6
959,913 + MPMX19_03540 0.42 -0.2
959,913 + MPMX19_03540 0.42 +0.1
959,913 + MPMX19_03540 0.42 -0.2
959,913 + MPMX19_03540 0.42 -1.2
959,913 + MPMX19_03540 0.42 -2.1
959,916 + MPMX19_03540 0.42 -0.1
959,916 + MPMX19_03540 0.42 -0.4
959,916 + MPMX19_03540 0.42 +0.2
959,916 + MPMX19_03540 0.42 -0.0
959,916 + MPMX19_03540 0.42 -0.9
959,916 + MPMX19_03540 0.42 +0.6
959,916 + MPMX19_03540 0.42 +0.1
959,916 + MPMX19_03540 0.42 -1.1
959,916 + MPMX19_03540 0.42 -0.6
959,916 + MPMX19_03540 0.42 +0.0
959,916 + MPMX19_03540 0.42 -2.2
959,917 - MPMX19_03540 0.42 -0.5
959,917 - MPMX19_03540 0.42 +0.2
959,917 - MPMX19_03540 0.42 +0.3
959,917 - MPMX19_03540 0.42 -0.0
959,917 - MPMX19_03540 0.42 -0.7
959,917 - MPMX19_03540 0.42 +1.0
959,934 + MPMX19_03540 0.43 +1.2
959,935 - MPMX19_03540 0.43 +0.3
960,039 + MPMX19_03540 0.50 +1.1
960,211 - MPMX19_03540 0.61 -0.2

Or see this region's nucleotide sequence