Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03512

Experiment: NL-CCM, start OD=0.1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_03511 and MPMX19_03512 overlap by 4 nucleotidesMPMX19_03512 and MPMX19_03513 are separated by 14 nucleotides MPMX19_03511: MPMX19_03511 - NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic, at 927,326 to 928,975 _03511 MPMX19_03512: MPMX19_03512 - Hydrogenase-4 component E, at 928,972 to 929,625 _03512 MPMX19_03513: MPMX19_03513 - Na(+)/H(+) antiporter subunit A, at 929,640 to 931,103 _03513 Position (kb) 928 929 930Strain fitness (log2 ratio) -2 -1 0 1 2at 927.990 kb on + strand, within MPMX19_03511at 927.991 kb on - strand, within MPMX19_03511at 928.119 kb on + strand, within MPMX19_03511at 928.119 kb on + strand, within MPMX19_03511at 928.119 kb on + strand, within MPMX19_03511at 928.119 kb on + strand, within MPMX19_03511at 928.120 kb on - strand, within MPMX19_03511at 928.120 kb on - strand, within MPMX19_03511at 928.120 kb on - strand, within MPMX19_03511at 928.120 kb on - strand, within MPMX19_03511at 928.120 kb on - strand, within MPMX19_03511at 928.120 kb on - strand, within MPMX19_03511at 928.120 kb on - strand, within MPMX19_03511at 928.395 kb on + strand, within MPMX19_03511at 928.395 kb on + strand, within MPMX19_03511at 928.395 kb on + strand, within MPMX19_03511at 928.396 kb on - strand, within MPMX19_03511at 928.434 kb on + strand, within MPMX19_03511at 928.434 kb on + strand, within MPMX19_03511at 928.435 kb on - strand, within MPMX19_03511at 928.435 kb on - strand, within MPMX19_03511at 928.470 kb on + strand, within MPMX19_03511at 928.471 kb on - strand, within MPMX19_03511at 928.471 kb on - strand, within MPMX19_03511at 928.591 kb on - strand, within MPMX19_03511at 928.593 kb on + strand, within MPMX19_03511at 928.593 kb on + strand, within MPMX19_03511at 928.593 kb on + strand, within MPMX19_03511at 928.593 kb on + strand, within MPMX19_03511at 928.593 kb on + strand, within MPMX19_03511at 928.593 kb on + strand, within MPMX19_03511at 928.593 kb on + strand, within MPMX19_03511at 928.594 kb on - strand, within MPMX19_03511at 928.594 kb on - strand, within MPMX19_03511at 928.647 kb on + strand, within MPMX19_03511at 928.647 kb on + strand, within MPMX19_03511at 928.647 kb on + strand, within MPMX19_03511at 928.648 kb on - strand, within MPMX19_03511at 928.648 kb on - strand, within MPMX19_03511at 928.648 kb on - strand, within MPMX19_03511at 928.648 kb on - strand, within MPMX19_03511at 928.659 kb on + strand, within MPMX19_03511at 928.659 kb on + strand, within MPMX19_03511at 928.659 kb on + strand, within MPMX19_03511at 928.659 kb on + strand, within MPMX19_03511at 928.660 kb on - strand, within MPMX19_03511at 928.660 kb on - strand, within MPMX19_03511at 928.660 kb on - strand, within MPMX19_03511at 928.660 kb on - strand, within MPMX19_03511at 928.660 kb on - strand, within MPMX19_03511at 928.660 kb on - strand, within MPMX19_03511at 928.803 kb on + strand, within MPMX19_03511at 928.803 kb on + strand, within MPMX19_03511at 928.804 kb on - strand, within MPMX19_03511at 928.804 kb on - strand, within MPMX19_03511at 928.804 kb on - strand, within MPMX19_03511at 928.804 kb on - strand, within MPMX19_03511at 928.961 kb on + strandat 929.396 kb on + strand, within MPMX19_03512at 929.396 kb on + strand, within MPMX19_03512at 929.396 kb on + strand, within MPMX19_03512at 929.396 kb on + strand, within MPMX19_03512at 929.396 kb on + strand, within MPMX19_03512at 929.397 kb on - strand, within MPMX19_03512at 929.397 kb on - strand, within MPMX19_03512at 929.397 kb on - strand, within MPMX19_03512at 929.397 kb on - strand, within MPMX19_03512at 929.397 kb on - strand, within MPMX19_03512at 929.397 kb on - strand, within MPMX19_03512at 929.397 kb on - strand, within MPMX19_03512at 929.397 kb on - strand, within MPMX19_03512at 929.397 kb on - strand, within MPMX19_03512at 929.397 kb on - strand, within MPMX19_03512at 929.397 kb on - strand, within MPMX19_03512at 929.397 kb on - strand, within MPMX19_03512at 929.397 kb on - strand, within MPMX19_03512at 929.453 kb on + strand, within MPMX19_03512at 929.453 kb on + strand, within MPMX19_03512at 929.453 kb on + strand, within MPMX19_03512at 929.453 kb on + strand, within MPMX19_03512at 929.454 kb on - strand, within MPMX19_03512at 929.454 kb on - strand, within MPMX19_03512at 929.454 kb on - strand, within MPMX19_03512at 929.525 kb on + strand, within MPMX19_03512at 929.525 kb on - strand, within MPMX19_03512at 929.526 kb on - strand, within MPMX19_03512at 929.526 kb on - strand, within MPMX19_03512at 929.526 kb on - strand, within MPMX19_03512at 929.526 kb on - strand, within MPMX19_03512at 930.025 kb on + strand, within MPMX19_03513at 930.025 kb on + strand, within MPMX19_03513at 930.026 kb on - strand, within MPMX19_03513at 930.151 kb on + strand, within MPMX19_03513at 930.151 kb on + strand, within MPMX19_03513at 930.151 kb on + strand, within MPMX19_03513at 930.151 kb on + strand, within MPMX19_03513at 930.151 kb on + strand, within MPMX19_03513at 930.151 kb on + strand, within MPMX19_03513at 930.152 kb on - strand, within MPMX19_03513at 930.152 kb on - strand, within MPMX19_03513at 930.152 kb on - strand, within MPMX19_03513at 930.152 kb on - strand, within MPMX19_03513at 930.152 kb on - strand, within MPMX19_03513at 930.152 kb on - strand, within MPMX19_03513at 930.152 kb on - strand, within MPMX19_03513at 930.152 kb on - strand, within MPMX19_03513at 930.176 kb on - strand, within MPMX19_03513at 930.211 kb on + strand, within MPMX19_03513at 930.211 kb on + strand, within MPMX19_03513at 930.211 kb on + strand, within MPMX19_03513at 930.211 kb on + strand, within MPMX19_03513at 930.211 kb on + strand, within MPMX19_03513at 930.212 kb on - strand, within MPMX19_03513at 930.212 kb on - strand, within MPMX19_03513at 930.212 kb on - strand, within MPMX19_03513at 930.212 kb on - strand, within MPMX19_03513at 930.212 kb on - strand, within MPMX19_03513at 930.212 kb on - strand, within MPMX19_03513at 930.212 kb on - strand, within MPMX19_03513at 930.226 kb on + strand, within MPMX19_03513at 930.226 kb on + strand, within MPMX19_03513at 930.227 kb on - strand, within MPMX19_03513at 930.227 kb on - strand, within MPMX19_03513at 930.227 kb on - strand, within MPMX19_03513at 930.227 kb on - strand, within MPMX19_03513at 930.314 kb on + strand, within MPMX19_03513at 930.314 kb on + strand, within MPMX19_03513at 930.315 kb on - strand, within MPMX19_03513at 930.315 kb on - strand, within MPMX19_03513at 930.315 kb on - strand, within MPMX19_03513at 930.315 kb on - strand, within MPMX19_03513at 930.315 kb on - strand, within MPMX19_03513at 930.316 kb on + strand, within MPMX19_03513at 930.316 kb on + strand, within MPMX19_03513at 930.316 kb on + strand, within MPMX19_03513at 930.316 kb on + strand, within MPMX19_03513at 930.316 kb on + strand, within MPMX19_03513at 930.316 kb on + strand, within MPMX19_03513at 930.316 kb on + strand, within MPMX19_03513at 930.316 kb on + strand, within MPMX19_03513at 930.316 kb on + strand, within MPMX19_03513at 930.317 kb on - strand, within MPMX19_03513at 930.317 kb on - strand, within MPMX19_03513at 930.317 kb on - strand, within MPMX19_03513at 930.317 kb on - strand, within MPMX19_03513at 930.317 kb on - strand, within MPMX19_03513at 930.353 kb on - strand, within MPMX19_03513at 930.353 kb on - strand, within MPMX19_03513at 930.353 kb on - strand, within MPMX19_03513at 930.541 kb on + strand, within MPMX19_03513at 930.542 kb on - strand, within MPMX19_03513at 930.542 kb on - strand, within MPMX19_03513at 930.542 kb on - strand, within MPMX19_03513at 930.613 kb on + strand, within MPMX19_03513at 930.613 kb on + strand, within MPMX19_03513at 930.613 kb on + strand, within MPMX19_03513at 930.613 kb on + strand, within MPMX19_03513at 930.614 kb on - strand, within MPMX19_03513at 930.614 kb on - strand, within MPMX19_03513at 930.614 kb on - strand, within MPMX19_03513at 930.614 kb on - strand, within MPMX19_03513at 930.616 kb on + strand, within MPMX19_03513

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
remove
927,990 + MPMX19_03511 0.40 +0.2
927,991 - MPMX19_03511 0.40 -0.2
928,119 + MPMX19_03511 0.48 -0.0
928,119 + MPMX19_03511 0.48 -0.2
928,119 + MPMX19_03511 0.48 +0.9
928,119 + MPMX19_03511 0.48 +0.5
928,120 - MPMX19_03511 0.48 +1.4
928,120 - MPMX19_03511 0.48 -0.5
928,120 - MPMX19_03511 0.48 -0.4
928,120 - MPMX19_03511 0.48 -0.7
928,120 - MPMX19_03511 0.48 -0.1
928,120 - MPMX19_03511 0.48 -1.4
928,120 - MPMX19_03511 0.48 -1.8
928,395 + MPMX19_03511 0.65 +0.8
928,395 + MPMX19_03511 0.65 -0.8
928,395 + MPMX19_03511 0.65 +0.4
928,396 - MPMX19_03511 0.65 -1.0
928,434 + MPMX19_03511 0.67 -0.2
928,434 + MPMX19_03511 0.67 +0.4
928,435 - MPMX19_03511 0.67 -1.2
928,435 - MPMX19_03511 0.67 -0.4
928,470 + MPMX19_03511 0.69 +0.2
928,471 - MPMX19_03511 0.69 -0.3
928,471 - MPMX19_03511 0.69 -1.3
928,591 - MPMX19_03511 0.77 -0.0
928,593 + MPMX19_03511 0.77 +0.3
928,593 + MPMX19_03511 0.77 -0.8
928,593 + MPMX19_03511 0.77 -0.2
928,593 + MPMX19_03511 0.77 -0.8
928,593 + MPMX19_03511 0.77 -0.2
928,593 + MPMX19_03511 0.77 -1.0
928,593 + MPMX19_03511 0.77 +0.8
928,594 - MPMX19_03511 0.77 -0.7
928,594 - MPMX19_03511 0.77 -1.8
928,647 + MPMX19_03511 0.80 +0.1
928,647 + MPMX19_03511 0.80 -1.4
928,647 + MPMX19_03511 0.80 -0.9
928,648 - MPMX19_03511 0.80 -0.0
928,648 - MPMX19_03511 0.80 -0.4
928,648 - MPMX19_03511 0.80 -2.4
928,648 - MPMX19_03511 0.80 -0.4
928,659 + MPMX19_03511 0.81 +2.0
928,659 + MPMX19_03511 0.81 -0.6
928,659 + MPMX19_03511 0.81 -1.2
928,659 + MPMX19_03511 0.81 -1.0
928,660 - MPMX19_03511 0.81 +0.6
928,660 - MPMX19_03511 0.81 +0.8
928,660 - MPMX19_03511 0.81 +0.4
928,660 - MPMX19_03511 0.81 -1.3
928,660 - MPMX19_03511 0.81 -0.0
928,660 - MPMX19_03511 0.81 -1.6
928,803 + MPMX19_03511 0.90 -0.7
928,803 + MPMX19_03511 0.90 -0.6
928,804 - MPMX19_03511 0.90 +0.1
928,804 - MPMX19_03511 0.90 -0.5
928,804 - MPMX19_03511 0.90 +1.5
928,804 - MPMX19_03511 0.90 +0.0
928,961 + -2.0
929,396 + MPMX19_03512 0.65 -0.8
929,396 + MPMX19_03512 0.65 -0.5
929,396 + MPMX19_03512 0.65 -1.1
929,396 + MPMX19_03512 0.65 -0.0
929,396 + MPMX19_03512 0.65 -0.8
929,397 - MPMX19_03512 0.65 -1.5
929,397 - MPMX19_03512 0.65 -0.8
929,397 - MPMX19_03512 0.65 +0.4
929,397 - MPMX19_03512 0.65 -0.0
929,397 - MPMX19_03512 0.65 -0.3
929,397 - MPMX19_03512 0.65 -2.2
929,397 - MPMX19_03512 0.65 -0.7
929,397 - MPMX19_03512 0.65 -0.5
929,397 - MPMX19_03512 0.65 -1.0
929,397 - MPMX19_03512 0.65 -1.0
929,397 - MPMX19_03512 0.65 +0.4
929,397 - MPMX19_03512 0.65 -0.2
929,397 - MPMX19_03512 0.65 -0.5
929,453 + MPMX19_03512 0.74 +0.3
929,453 + MPMX19_03512 0.74 +0.9
929,453 + MPMX19_03512 0.74 +0.0
929,453 + MPMX19_03512 0.74 -1.4
929,454 - MPMX19_03512 0.74 -1.5
929,454 - MPMX19_03512 0.74 -1.1
929,454 - MPMX19_03512 0.74 -1.0
929,525 + MPMX19_03512 0.85 -1.8
929,525 - MPMX19_03512 0.85 -0.9
929,526 - MPMX19_03512 0.85 -0.2
929,526 - MPMX19_03512 0.85 +0.2
929,526 - MPMX19_03512 0.85 -0.6
929,526 - MPMX19_03512 0.85 -1.4
930,025 + MPMX19_03513 0.26 -0.2
930,025 + MPMX19_03513 0.26 +1.2
930,026 - MPMX19_03513 0.26 +0.1
930,151 + MPMX19_03513 0.35 -2.5
930,151 + MPMX19_03513 0.35 +0.5
930,151 + MPMX19_03513 0.35 +0.1
930,151 + MPMX19_03513 0.35 -1.8
930,151 + MPMX19_03513 0.35 +0.9
930,151 + MPMX19_03513 0.35 -0.6
930,152 - MPMX19_03513 0.35 +0.1
930,152 - MPMX19_03513 0.35 -1.3
930,152 - MPMX19_03513 0.35 -1.8
930,152 - MPMX19_03513 0.35 -0.8
930,152 - MPMX19_03513 0.35 -0.5
930,152 - MPMX19_03513 0.35 +0.1
930,152 - MPMX19_03513 0.35 -0.9
930,152 - MPMX19_03513 0.35 +1.1
930,176 - MPMX19_03513 0.37 -1.3
930,211 + MPMX19_03513 0.39 -1.3
930,211 + MPMX19_03513 0.39 +0.7
930,211 + MPMX19_03513 0.39 -0.2
930,211 + MPMX19_03513 0.39 +0.3
930,211 + MPMX19_03513 0.39 -0.7
930,212 - MPMX19_03513 0.39 -0.9
930,212 - MPMX19_03513 0.39 -0.3
930,212 - MPMX19_03513 0.39 +1.8
930,212 - MPMX19_03513 0.39 -2.3
930,212 - MPMX19_03513 0.39 -2.4
930,212 - MPMX19_03513 0.39 -0.7
930,212 - MPMX19_03513 0.39 +0.4
930,226 + MPMX19_03513 0.40 +0.1
930,226 + MPMX19_03513 0.40 -1.4
930,227 - MPMX19_03513 0.40 +0.5
930,227 - MPMX19_03513 0.40 -1.9
930,227 - MPMX19_03513 0.40 -0.3
930,227 - MPMX19_03513 0.40 +0.2
930,314 + MPMX19_03513 0.46 +0.1
930,314 + MPMX19_03513 0.46 +0.2
930,315 - MPMX19_03513 0.46 -0.5
930,315 - MPMX19_03513 0.46 +0.1
930,315 - MPMX19_03513 0.46 -2.4
930,315 - MPMX19_03513 0.46 +0.3
930,315 - MPMX19_03513 0.46 -0.8
930,316 + MPMX19_03513 0.46 -1.0
930,316 + MPMX19_03513 0.46 -0.4
930,316 + MPMX19_03513 0.46 -1.6
930,316 + MPMX19_03513 0.46 +0.1
930,316 + MPMX19_03513 0.46 -0.5
930,316 + MPMX19_03513 0.46 +0.5
930,316 + MPMX19_03513 0.46 -0.6
930,316 + MPMX19_03513 0.46 -1.4
930,316 + MPMX19_03513 0.46 -0.3
930,317 - MPMX19_03513 0.46 -0.2
930,317 - MPMX19_03513 0.46 -2.7
930,317 - MPMX19_03513 0.46 +0.9
930,317 - MPMX19_03513 0.46 +0.5
930,317 - MPMX19_03513 0.46 -0.5
930,353 - MPMX19_03513 0.49 -0.4
930,353 - MPMX19_03513 0.49 -0.9
930,353 - MPMX19_03513 0.49 -1.9
930,541 + MPMX19_03513 0.62 -1.3
930,542 - MPMX19_03513 0.62 +0.2
930,542 - MPMX19_03513 0.62 -0.5
930,542 - MPMX19_03513 0.62 +0.7
930,613 + MPMX19_03513 0.66 -0.0
930,613 + MPMX19_03513 0.66 -1.4
930,613 + MPMX19_03513 0.66 -0.8
930,613 + MPMX19_03513 0.66 +0.5
930,614 - MPMX19_03513 0.67 +1.0
930,614 - MPMX19_03513 0.67 -0.3
930,614 - MPMX19_03513 0.67 -1.1
930,614 - MPMX19_03513 0.67 -0.0
930,616 + MPMX19_03513 0.67 -2.0

Or see this region's nucleotide sequence