Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03495

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03494 and MPMX19_03495 overlap by 13 nucleotidesMPMX19_03495 and MPMX19_03496 are separated by 9 nucleotides MPMX19_03494: MPMX19_03494 - Regulatory protein AtoC, at 909,455 to 910,861 _03494 MPMX19_03495: MPMX19_03495 - Adaptive-response sensory-kinase SasA, at 910,849 to 912,963 _03495 MPMX19_03496: MPMX19_03496 - Protein FdhE, at 912,973 to 913,887 _03496 Position (kb) 910 911 912 913Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 910.220 kb on + strand, within MPMX19_03494at 910.220 kb on + strand, within MPMX19_03494at 910.220 kb on + strand, within MPMX19_03494at 910.220 kb on + strand, within MPMX19_03494at 910.220 kb on + strand, within MPMX19_03494at 910.221 kb on - strand, within MPMX19_03494at 910.221 kb on - strand, within MPMX19_03494at 910.221 kb on - strand, within MPMX19_03494at 910.221 kb on - strand, within MPMX19_03494at 910.221 kb on - strand, within MPMX19_03494at 910.223 kb on + strand, within MPMX19_03494at 910.224 kb on - strand, within MPMX19_03494at 910.224 kb on - strand, within MPMX19_03494at 910.224 kb on - strand, within MPMX19_03494at 910.224 kb on - strand, within MPMX19_03494at 910.224 kb on - strand, within MPMX19_03494at 910.753 kb on + strandat 910.753 kb on + strandat 910.753 kb on + strandat 910.753 kb on + strandat 910.754 kb on - strandat 910.754 kb on - strandat 910.754 kb on - strandat 910.754 kb on - strandat 910.754 kb on - strandat 910.987 kb on + strandat 910.988 kb on - strandat 910.988 kb on - strandat 911.005 kb on + strandat 911.005 kb on + strandat 911.005 kb on + strandat 911.006 kb on - strandat 911.006 kb on - strandat 911.006 kb on - strandat 911.578 kb on + strand, within MPMX19_03495at 911.578 kb on + strand, within MPMX19_03495at 911.578 kb on + strand, within MPMX19_03495at 911.579 kb on - strand, within MPMX19_03495at 911.710 kb on + strand, within MPMX19_03495at 911.710 kb on + strand, within MPMX19_03495at 911.710 kb on + strand, within MPMX19_03495at 911.711 kb on - strand, within MPMX19_03495at 911.773 kb on + strand, within MPMX19_03495at 911.773 kb on + strand, within MPMX19_03495at 911.773 kb on + strand, within MPMX19_03495at 911.773 kb on + strand, within MPMX19_03495at 911.773 kb on + strand, within MPMX19_03495at 911.773 kb on + strand, within MPMX19_03495at 911.773 kb on + strand, within MPMX19_03495at 911.773 kb on + strand, within MPMX19_03495at 911.773 kb on + strand, within MPMX19_03495at 911.773 kb on + strand, within MPMX19_03495at 911.773 kb on + strand, within MPMX19_03495at 911.773 kb on + strand, within MPMX19_03495at 911.773 kb on + strand, within MPMX19_03495at 911.773 kb on + strand, within MPMX19_03495at 911.773 kb on + strand, within MPMX19_03495at 911.773 kb on + strand, within MPMX19_03495at 911.773 kb on + strand, within MPMX19_03495at 911.773 kb on + strand, within MPMX19_03495at 911.773 kb on + strand, within MPMX19_03495at 911.773 kb on + strand, within MPMX19_03495at 911.773 kb on + strand, within MPMX19_03495at 911.773 kb on + strand, within MPMX19_03495at 911.773 kb on + strand, within MPMX19_03495at 911.773 kb on + strand, within MPMX19_03495at 911.773 kb on + strand, within MPMX19_03495at 911.773 kb on + strand, within MPMX19_03495at 911.773 kb on + strand, within MPMX19_03495at 911.773 kb on + strand, within MPMX19_03495at 911.774 kb on - strand, within MPMX19_03495at 911.774 kb on - strand, within MPMX19_03495at 911.774 kb on - strand, within MPMX19_03495at 911.774 kb on - strand, within MPMX19_03495at 911.774 kb on - strand, within MPMX19_03495at 911.774 kb on - strand, within MPMX19_03495at 911.774 kb on - strand, within MPMX19_03495at 911.774 kb on - strand, within MPMX19_03495at 911.774 kb on - strand, within MPMX19_03495at 911.774 kb on - strand, within MPMX19_03495at 911.774 kb on - strand, within MPMX19_03495at 911.774 kb on - strand, within MPMX19_03495at 911.774 kb on - strand, within MPMX19_03495at 911.774 kb on - strand, within MPMX19_03495at 911.774 kb on - strand, within MPMX19_03495at 911.774 kb on - strand, within MPMX19_03495at 911.774 kb on - strand, within MPMX19_03495at 911.774 kb on - strand, within MPMX19_03495at 911.774 kb on - strand, within MPMX19_03495at 911.774 kb on - strand, within MPMX19_03495at 911.774 kb on - strand, within MPMX19_03495at 911.774 kb on - strand, within MPMX19_03495at 911.830 kb on + strand, within MPMX19_03495at 911.830 kb on + strand, within MPMX19_03495at 911.830 kb on + strand, within MPMX19_03495at 911.830 kb on + strand, within MPMX19_03495at 911.830 kb on + strand, within MPMX19_03495at 911.830 kb on + strand, within MPMX19_03495at 911.830 kb on + strand, within MPMX19_03495at 911.830 kb on + strand, within MPMX19_03495at 911.830 kb on + strand, within MPMX19_03495at 911.830 kb on + strand, within MPMX19_03495at 911.831 kb on - strand, within MPMX19_03495at 911.831 kb on - strand, within MPMX19_03495at 911.831 kb on - strand, within MPMX19_03495at 911.831 kb on - strand, within MPMX19_03495at 911.831 kb on - strand, within MPMX19_03495at 911.831 kb on - strand, within MPMX19_03495at 911.831 kb on - strand, within MPMX19_03495at 911.831 kb on - strand, within MPMX19_03495at 911.867 kb on + strand, within MPMX19_03495at 911.867 kb on + strand, within MPMX19_03495at 911.867 kb on + strand, within MPMX19_03495at 911.867 kb on + strand, within MPMX19_03495at 911.867 kb on + strand, within MPMX19_03495at 911.868 kb on - strand, within MPMX19_03495at 911.869 kb on + strand, within MPMX19_03495at 911.869 kb on + strand, within MPMX19_03495at 911.870 kb on - strand, within MPMX19_03495at 912.433 kb on + strand, within MPMX19_03495at 912.433 kb on + strand, within MPMX19_03495at 912.433 kb on + strand, within MPMX19_03495at 912.434 kb on - strand, within MPMX19_03495at 912.434 kb on - strand, within MPMX19_03495at 912.434 kb on - strand, within MPMX19_03495at 912.434 kb on - strand, within MPMX19_03495at 912.434 kb on - strand, within MPMX19_03495at 912.434 kb on - strand, within MPMX19_03495at 913.260 kb on + strand, within MPMX19_03496at 913.260 kb on + strand, within MPMX19_03496at 913.260 kb on + strand, within MPMX19_03496at 913.260 kb on + strand, within MPMX19_03496at 913.261 kb on - strand, within MPMX19_03496at 913.261 kb on - strand, within MPMX19_03496at 913.261 kb on - strand, within MPMX19_03496at 913.261 kb on - strand, within MPMX19_03496at 913.283 kb on + strand, within MPMX19_03496at 913.284 kb on - strand, within MPMX19_03496at 913.860 kb on + strandat 913.936 kb on + strandat 913.936 kb on + strandat 913.936 kb on + strandat 913.937 kb on - strandat 913.937 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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910,220 + MPMX19_03494 0.54 -0.8
910,220 + MPMX19_03494 0.54 +0.6
910,220 + MPMX19_03494 0.54 +0.2
910,220 + MPMX19_03494 0.54 -1.3
910,220 + MPMX19_03494 0.54 -1.9
910,221 - MPMX19_03494 0.54 +0.6
910,221 - MPMX19_03494 0.54 -0.5
910,221 - MPMX19_03494 0.54 +0.1
910,221 - MPMX19_03494 0.54 -0.4
910,221 - MPMX19_03494 0.54 +1.2
910,223 + MPMX19_03494 0.55 +0.0
910,224 - MPMX19_03494 0.55 -1.7
910,224 - MPMX19_03494 0.55 +1.4
910,224 - MPMX19_03494 0.55 -0.5
910,224 - MPMX19_03494 0.55 -0.5
910,224 - MPMX19_03494 0.55 +0.6
910,753 + +0.9
910,753 + +0.8
910,753 + -0.8
910,753 + +0.3
910,754 - -1.3
910,754 - -0.0
910,754 - +0.4
910,754 - -0.4
910,754 - +1.0
910,987 + +1.0
910,988 - +0.2
910,988 - -0.7
911,005 + -1.0
911,005 + -0.5
911,005 + +0.3
911,006 - -2.4
911,006 - +0.5
911,006 - +0.2
911,578 + MPMX19_03495 0.34 -0.9
911,578 + MPMX19_03495 0.34 +0.9
911,578 + MPMX19_03495 0.34 -1.0
911,579 - MPMX19_03495 0.35 +0.3
911,710 + MPMX19_03495 0.41 +0.2
911,710 + MPMX19_03495 0.41 +0.2
911,710 + MPMX19_03495 0.41 -0.8
911,711 - MPMX19_03495 0.41 -0.8
911,773 + MPMX19_03495 0.44 +0.5
911,773 + MPMX19_03495 0.44 -1.0
911,773 + MPMX19_03495 0.44 -0.0
911,773 + MPMX19_03495 0.44 +0.2
911,773 + MPMX19_03495 0.44 +0.5
911,773 + MPMX19_03495 0.44 -0.6
911,773 + MPMX19_03495 0.44 -0.2
911,773 + MPMX19_03495 0.44 -1.5
911,773 + MPMX19_03495 0.44 -0.1
911,773 + MPMX19_03495 0.44 -0.1
911,773 + MPMX19_03495 0.44 +0.9
911,773 + MPMX19_03495 0.44 -0.3
911,773 + MPMX19_03495 0.44 +0.2
911,773 + MPMX19_03495 0.44 -1.2
911,773 + MPMX19_03495 0.44 -0.9
911,773 + MPMX19_03495 0.44 -0.5
911,773 + MPMX19_03495 0.44 -0.0
911,773 + MPMX19_03495 0.44 -3.6
911,773 + MPMX19_03495 0.44 +0.5
911,773 + MPMX19_03495 0.44 +0.0
911,773 + MPMX19_03495 0.44 +0.5
911,773 + MPMX19_03495 0.44 +0.7
911,773 + MPMX19_03495 0.44 -0.5
911,773 + MPMX19_03495 0.44 -0.5
911,773 + MPMX19_03495 0.44 -1.1
911,773 + MPMX19_03495 0.44 -0.8
911,773 + MPMX19_03495 0.44 -0.7
911,773 + MPMX19_03495 0.44 -1.9
911,774 - MPMX19_03495 0.44 +2.3
911,774 - MPMX19_03495 0.44 +0.5
911,774 - MPMX19_03495 0.44 -0.0
911,774 - MPMX19_03495 0.44 -1.3
911,774 - MPMX19_03495 0.44 -0.3
911,774 - MPMX19_03495 0.44 -0.6
911,774 - MPMX19_03495 0.44 -1.9
911,774 - MPMX19_03495 0.44 -1.5
911,774 - MPMX19_03495 0.44 -1.2
911,774 - MPMX19_03495 0.44 +1.0
911,774 - MPMX19_03495 0.44 -0.6
911,774 - MPMX19_03495 0.44 -2.2
911,774 - MPMX19_03495 0.44 +0.9
911,774 - MPMX19_03495 0.44 -0.3
911,774 - MPMX19_03495 0.44 -1.0
911,774 - MPMX19_03495 0.44 +0.2
911,774 - MPMX19_03495 0.44 -0.2
911,774 - MPMX19_03495 0.44 +0.1
911,774 - MPMX19_03495 0.44 +0.5
911,774 - MPMX19_03495 0.44 -1.3
911,774 - MPMX19_03495 0.44 +0.7
911,774 - MPMX19_03495 0.44 -0.0
911,830 + MPMX19_03495 0.46 -0.0
911,830 + MPMX19_03495 0.46 -0.2
911,830 + MPMX19_03495 0.46 -0.3
911,830 + MPMX19_03495 0.46 -0.1
911,830 + MPMX19_03495 0.46 +0.5
911,830 + MPMX19_03495 0.46 +0.5
911,830 + MPMX19_03495 0.46 -0.1
911,830 + MPMX19_03495 0.46 +0.0
911,830 + MPMX19_03495 0.46 -0.6
911,830 + MPMX19_03495 0.46 -2.3
911,831 - MPMX19_03495 0.46 -0.2
911,831 - MPMX19_03495 0.46 -2.5
911,831 - MPMX19_03495 0.46 -0.5
911,831 - MPMX19_03495 0.46 +0.9
911,831 - MPMX19_03495 0.46 +0.5
911,831 - MPMX19_03495 0.46 -0.2
911,831 - MPMX19_03495 0.46 -1.5
911,831 - MPMX19_03495 0.46 -1.4
911,867 + MPMX19_03495 0.48 +0.1
911,867 + MPMX19_03495 0.48 -0.7
911,867 + MPMX19_03495 0.48 -0.0
911,867 + MPMX19_03495 0.48 +0.2
911,867 + MPMX19_03495 0.48 -1.5
911,868 - MPMX19_03495 0.48 -1.0
911,869 + MPMX19_03495 0.48 -1.5
911,869 + MPMX19_03495 0.48 +0.5
911,870 - MPMX19_03495 0.48 -0.0
912,433 + MPMX19_03495 0.75 -1.5
912,433 + MPMX19_03495 0.75 -2.0
912,433 + MPMX19_03495 0.75 +0.7
912,434 - MPMX19_03495 0.75 -0.8
912,434 - MPMX19_03495 0.75 -1.6
912,434 - MPMX19_03495 0.75 -1.0
912,434 - MPMX19_03495 0.75 +0.2
912,434 - MPMX19_03495 0.75 -1.8
912,434 - MPMX19_03495 0.75 -0.2
913,260 + MPMX19_03496 0.31 -0.0
913,260 + MPMX19_03496 0.31 -0.3
913,260 + MPMX19_03496 0.31 -0.0
913,260 + MPMX19_03496 0.31 -0.0
913,261 - MPMX19_03496 0.31 -0.8
913,261 - MPMX19_03496 0.31 -1.0
913,261 - MPMX19_03496 0.31 -0.2
913,261 - MPMX19_03496 0.31 -0.0
913,283 + MPMX19_03496 0.34 -0.3
913,284 - MPMX19_03496 0.34 +1.8
913,860 + -0.9
913,936 + +0.5
913,936 + +0.4
913,936 + +0.8
913,937 - -0.4
913,937 - +0.4

Or see this region's nucleotide sequence