Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03463

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03462 and MPMX19_03463 overlap by 8 nucleotidesMPMX19_03463 and MPMX19_03464 are separated by 106 nucleotides MPMX19_03462: MPMX19_03462 - Acetate CoA-transferase subunit alpha, at 872,312 to 872,974 _03462 MPMX19_03463: MPMX19_03463 - Butyrate--acetoacetate CoA-transferase subunit B, at 872,967 to 873,623 _03463 MPMX19_03464: MPMX19_03464 - Putative short-chain fatty acid transporter, at 873,730 to 875,103 _03464 Position (kb) 872 873 874Strain fitness (log2 ratio) -2 -1 0 1 2at 872.103 kb on + strandat 872.104 kb on - strandat 872.114 kb on + strandat 872.114 kb on + strandat 872.115 kb on - strandat 872.116 kb on + strandat 872.317 kb on + strandat 872.318 kb on - strandat 872.318 kb on - strandat 872.729 kb on + strand, within MPMX19_03462at 872.730 kb on + strand, within MPMX19_03462at 872.730 kb on - strand, within MPMX19_03462at 872.730 kb on - strand, within MPMX19_03462at 872.730 kb on - strand, within MPMX19_03462at 872.789 kb on + strand, within MPMX19_03462at 872.789 kb on + strand, within MPMX19_03462at 872.789 kb on + strand, within MPMX19_03462at 872.789 kb on + strand, within MPMX19_03462at 872.789 kb on + strand, within MPMX19_03462at 872.789 kb on + strand, within MPMX19_03462at 872.790 kb on - strand, within MPMX19_03462at 872.790 kb on - strand, within MPMX19_03462at 873.829 kb on + strandat 873.829 kb on + strandat 873.830 kb on - strandat 873.830 kb on - strandat 873.830 kb on - strandat 874.189 kb on + strand, within MPMX19_03464at 874.213 kb on + strand, within MPMX19_03464at 874.213 kb on + strand, within MPMX19_03464at 874.213 kb on + strand, within MPMX19_03464at 874.213 kb on + strand, within MPMX19_03464at 874.213 kb on + strand, within MPMX19_03464at 874.213 kb on + strand, within MPMX19_03464at 874.214 kb on - strand, within MPMX19_03464at 874.214 kb on - strand, within MPMX19_03464at 874.214 kb on - strand, within MPMX19_03464at 874.214 kb on - strand, within MPMX19_03464at 874.214 kb on - strand, within MPMX19_03464at 874.214 kb on - strand, within MPMX19_03464at 874.214 kb on - strand, within MPMX19_03464at 874.214 kb on - strand, within MPMX19_03464at 874.214 kb on - strand, within MPMX19_03464at 874.214 kb on - strand, within MPMX19_03464at 874.215 kb on + strand, within MPMX19_03464at 874.215 kb on + strand, within MPMX19_03464at 874.339 kb on + strand, within MPMX19_03464at 874.339 kb on + strand, within MPMX19_03464at 874.339 kb on + strand, within MPMX19_03464at 874.339 kb on + strand, within MPMX19_03464at 874.339 kb on + strand, within MPMX19_03464at 874.339 kb on + strand, within MPMX19_03464at 874.339 kb on + strand, within MPMX19_03464at 874.339 kb on + strand, within MPMX19_03464at 874.339 kb on + strand, within MPMX19_03464at 874.339 kb on + strand, within MPMX19_03464at 874.339 kb on + strand, within MPMX19_03464at 874.339 kb on + strand, within MPMX19_03464at 874.339 kb on + strand, within MPMX19_03464at 874.340 kb on - strand, within MPMX19_03464at 874.340 kb on - strand, within MPMX19_03464at 874.340 kb on - strand, within MPMX19_03464at 874.340 kb on - strand, within MPMX19_03464at 874.340 kb on - strand, within MPMX19_03464at 874.340 kb on - strand, within MPMX19_03464at 874.340 kb on - strand, within MPMX19_03464at 874.340 kb on - strand, within MPMX19_03464at 874.340 kb on - strand, within MPMX19_03464at 874.340 kb on - strand, within MPMX19_03464at 874.340 kb on - strand, within MPMX19_03464at 874.340 kb on - strand, within MPMX19_03464at 874.340 kb on - strand, within MPMX19_03464at 874.340 kb on - strand, within MPMX19_03464at 874.340 kb on - strand, within MPMX19_03464at 874.340 kb on - strand, within MPMX19_03464at 874.552 kb on + strand, within MPMX19_03464at 874.552 kb on + strand, within MPMX19_03464at 874.552 kb on + strand, within MPMX19_03464

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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872,103 + -0.8
872,104 - -0.1
872,114 + -0.4
872,114 + -0.5
872,115 - -1.1
872,116 + -0.3
872,317 + -0.6
872,318 - -1.9
872,318 - +0.6
872,729 + MPMX19_03462 0.63 -0.9
872,730 + MPMX19_03462 0.63 +1.0
872,730 - MPMX19_03462 0.63 +0.1
872,730 - MPMX19_03462 0.63 +1.1
872,730 - MPMX19_03462 0.63 -0.3
872,789 + MPMX19_03462 0.72 -0.1
872,789 + MPMX19_03462 0.72 +0.7
872,789 + MPMX19_03462 0.72 -0.0
872,789 + MPMX19_03462 0.72 +0.4
872,789 + MPMX19_03462 0.72 -0.6
872,789 + MPMX19_03462 0.72 -0.4
872,790 - MPMX19_03462 0.72 +1.3
872,790 - MPMX19_03462 0.72 -0.1
873,829 + +1.0
873,829 + -0.4
873,830 - -0.0
873,830 - +0.6
873,830 - +0.2
874,189 + MPMX19_03464 0.33 -2.4
874,213 + MPMX19_03464 0.35 -0.1
874,213 + MPMX19_03464 0.35 -0.4
874,213 + MPMX19_03464 0.35 +0.9
874,213 + MPMX19_03464 0.35 +2.0
874,213 + MPMX19_03464 0.35 +0.1
874,213 + MPMX19_03464 0.35 +0.6
874,214 - MPMX19_03464 0.35 -0.6
874,214 - MPMX19_03464 0.35 -0.5
874,214 - MPMX19_03464 0.35 -0.8
874,214 - MPMX19_03464 0.35 +0.2
874,214 - MPMX19_03464 0.35 -2.4
874,214 - MPMX19_03464 0.35 -0.4
874,214 - MPMX19_03464 0.35 -0.9
874,214 - MPMX19_03464 0.35 -0.3
874,214 - MPMX19_03464 0.35 -1.4
874,214 - MPMX19_03464 0.35 +1.3
874,215 + MPMX19_03464 0.35 +0.1
874,215 + MPMX19_03464 0.35 -0.4
874,339 + MPMX19_03464 0.44 +0.2
874,339 + MPMX19_03464 0.44 -0.4
874,339 + MPMX19_03464 0.44 -0.0
874,339 + MPMX19_03464 0.44 -1.3
874,339 + MPMX19_03464 0.44 -0.0
874,339 + MPMX19_03464 0.44 -1.4
874,339 + MPMX19_03464 0.44 -0.8
874,339 + MPMX19_03464 0.44 +0.1
874,339 + MPMX19_03464 0.44 -0.6
874,339 + MPMX19_03464 0.44 -0.0
874,339 + MPMX19_03464 0.44 -1.0
874,339 + MPMX19_03464 0.44 +0.3
874,339 + MPMX19_03464 0.44 -1.3
874,340 - MPMX19_03464 0.44 -0.7
874,340 - MPMX19_03464 0.44 -2.0
874,340 - MPMX19_03464 0.44 -0.5
874,340 - MPMX19_03464 0.44 -1.3
874,340 - MPMX19_03464 0.44 +0.1
874,340 - MPMX19_03464 0.44 -1.3
874,340 - MPMX19_03464 0.44 +0.9
874,340 - MPMX19_03464 0.44 -0.7
874,340 - MPMX19_03464 0.44 -0.6
874,340 - MPMX19_03464 0.44 -2.4
874,340 - MPMX19_03464 0.44 -0.6
874,340 - MPMX19_03464 0.44 +0.3
874,340 - MPMX19_03464 0.44 -0.7
874,340 - MPMX19_03464 0.44 -0.8
874,340 - MPMX19_03464 0.44 +0.1
874,340 - MPMX19_03464 0.44 +0.3
874,552 + MPMX19_03464 0.60 -1.3
874,552 + MPMX19_03464 0.60 -0.3
874,552 + MPMX19_03464 0.60 +0.6

Or see this region's nucleotide sequence